View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14254_high_2 (Length: 555)
Name: NF14254_high_2
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 35094129 - 35094667
Alignment:
| Q |
1 |
tatattctatgatgtttattagttgaagtgaaaatgaaaataccgtgaaggcgaacggccaagcttccattgggaacaaagtcggtgatgaaaagtttct |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094129 |
tatattctctgatgtttattagttgaagtgaaaatgaaaataccgtgaaggcgaacggccaagcttccattgggaacaaagtcggtgatgaaaagtttct |
35094228 |
T |
|
| Q |
101 |
cgtctcttttgtagtagtaagctacgagaggaaggagattcggatgattcaaccttcccagtcttctcatgtgctcttgaaactctggcctattaacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094229 |
cgtctcttttgtagtagtaagctacgagaggaaggagattcggatgattcaaccttcctagtcttctcatgtgctcttgaaactctggcctattaacatt |
35094328 |
T |
|
| Q |
201 |
gttcatttgtttgtatcttttgacgacaacagtagggccagtcaacaaagcagccttataggatgaactgtgacaaccacttcctaatatctcagcagcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094329 |
gttcatttgtttgtatcttttgacgacaacagtagggccagtcaacaaagcagccttataggatgaactgtgacaaccacttcctaatatctcagcagcg |
35094428 |
T |
|
| Q |
301 |
gctctcaaaagatcttgcaaatcaaattgtgctgatacttcttccctcacaaaggacaacttgctatctccttttctgctactggtattactgcttgcgc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35094429 |
gctctcaaaagatcttgcaaatcaaattgtgctgatacttcttccctcacaaaggacaacttgctatctccttttctgctactggtattactgcttgtgc |
35094528 |
T |
|
| Q |
401 |
gtgatcttaccgaaccctcgtctgtattattatttgatgatgatcctttcttttgattattattatccctgttgctggtgtttgcagctactccagctcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094529 |
gtgatcttaccgaaccctcgtctgtattattatttgatgatgatcctttcttttgattattattatccctgttgctggtgtttgcagctactccagctcc |
35094628 |
T |
|
| Q |
501 |
ttctcctaattcttcttgttgtttagtttttcttctttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094629 |
ttctcctaattcttcttgttgtttagtttttcttctttt |
35094667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32863466 - 32863427
Alignment:
| Q |
1 |
tatattctatgatgtttattagttgaagtgaaaatgaaaa |
40 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32863466 |
tatattctatcatgtttattagttgaagtaaaaatgaaaa |
32863427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10195391 - 10195349
Alignment:
| Q |
1 |
tatattctatgatgtttattagttgaagtgaaaatgaaaatac |
43 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
10195391 |
tatattttatcatgtctattagttgaagtgaaaatgaaaatac |
10195349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 13806144 - 13806182
Alignment:
| Q |
2 |
atattctatgatgtttattagttgaagtgaaaatgaaaa |
40 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13806144 |
atattctcttatgtttattagttgaagtgaaaatgaaaa |
13806182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 47364851 - 47364879
Alignment:
| Q |
12 |
atgtttattagttgaagtgaaaatgaaaa |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47364851 |
atgtttattagttgaagtgaaaatgaaaa |
47364879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 42509430 - 42509285
Alignment:
| Q |
41 |
taccgtgaaggcgaacggccaagcttccattgggaacaaagtcggtgatgaaaagtttctcgtctcttttgtagtagtaagctacgagaggaaggagatt |
140 |
Q |
| |
|
|||| ||||||||||| || | ||| || || ||||||||||||| | || || ||||| ||| || | || |||||||| || ||||||| | ||| |
|
|
| T |
42509430 |
taccatgaaggcgaacagctaggctaccgttctgaacaaagtcggtaaccaagagcttctcttcttttctataatagtaagcaacaagaggaatcaaatt |
42509331 |
T |
|
| Q |
141 |
cggatgattcaaccttcccagtcttctcatgtgctcttgaaactct |
186 |
Q |
| |
|
||||| ||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
42509330 |
aggatggttcaaccttccaatccttctcatatgctcttgaaactct |
42509285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 43537597 - 43537569
Alignment:
| Q |
12 |
atgtttattagttgaagtgaaaatgaaaa |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43537597 |
atgtttattagttgaagtgaaaatgaaaa |
43537569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University