View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_high_25 (Length: 210)
Name: NF14254_high_25
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_high_25 |
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| [»] scaffold0366 (4 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 44403316 - 44403512
Alignment:
| Q |
1 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaactagtaaataaaat |
100 |
Q |
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| T |
44403316 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaactagtaaataaaat |
44403415 |
T |
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| Q |
101 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgattttctt |
197 |
Q |
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| T |
44403416 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgattttctt |
44403512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 44403191 - 44403285
Alignment:
| Q |
104 |
atgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaagg-caattattctctaacctgccactaagtcagcttgattttctt |
197 |
Q |
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| T |
44403191 |
atgcaaccatgttaattgtgtcctaattttgccatgttatttgttcaaaaacacaattattctctaacctgctactaagtcagcttgattttctt |
44403285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11668 - 11475
Alignment:
| Q |
1 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaactagtaaataaaat |
100 |
Q |
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| T |
11668 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaactagtaaataaaat |
11569 |
T |
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| Q |
101 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgatttt |
194 |
Q |
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| T |
11568 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgatttt |
11475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15322 - 15166
Alignment:
| Q |
1 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaactagtaaataaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15322 |
tattattgcttctccttttgattaatgatatgaattaaattattagttttttaaaaagaaaattcatggtcataggatgttctaaaccagtaaataaaat |
15223 |
T |
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| Q |
101 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggca |
157 |
Q |
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| T |
15222 |
cacatgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaaggca |
15166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 15447 - 15353
Alignment:
| Q |
104 |
atgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaagg-caattattctctaacctgccactaagtcagcttgattttctt |
197 |
Q |
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| T |
15447 |
atgcaaccatgttaattgtgtcctaattttgccatgttatttgttcaaaaacacaattattctctaacctgctactaagtcagcttgattttctt |
15353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 11791 - 11699
Alignment:
| Q |
104 |
atgcaaccatgttaactgttgcctaattttgtcatgttaatagtacaaaagg-caattattctctaacctgccactaagtcagcttgattttctt |
197 |
Q |
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| T |
11791 |
atgcaatcatgttaattgtgtcctaattttgccatgttatttgttcaaaaacacaattattctctaac--gctactaagtcagcttgattttctt |
11699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 13889 - 13834
Alignment:
| Q |
139 |
gttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgatttt |
194 |
Q |
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| T |
13889 |
gttaatagtacaaaaggcaattattctctaacctgccactaagtcagcttgatttt |
13834 |
T |
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