View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14254_high_4 (Length: 518)

Name: NF14254_high_4
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14254_high_4
NF14254_high_4
[»] chr1 (36 HSPs)
chr1 (1-499)||(48823891-48824384)
chr1 (1-54)||(46333952-46334005)
chr1 (1-54)||(49444990-49445043)
chr1 (3-54)||(34062217-34062268)
chr1 (1-54)||(4609075-4609128)
chr1 (1-54)||(28928785-28928838)
chr1 (1-54)||(38674511-38674564)
chr1 (1-54)||(46334025-46334078)
chr1 (3-51)||(29371376-29371424)
chr1 (3-54)||(38674582-38674633)
chr1 (1-51)||(8337933-8337983)
chr1 (1-50)||(37155129-37155179)
chr1 (1-54)||(9157389-9157442)
chr1 (1-54)||(15220817-15220870)
chr1 (3-51)||(34062291-34062339)
chr1 (8-54)||(1819502-1819548)
chr1 (8-42)||(36290428-36290462)
chr1 (1-54)||(2573161-2573214)
chr1 (7-52)||(19711192-19711237)
chr1 (1-54)||(32157604-32157657)
chr1 (7-51)||(47303477-47303521)
chr1 (1-44)||(5694896-5694939)
chr1 (1-31)||(29179708-29179738)
chr1 (1-31)||(36290518-36290548)
chr1 (1-31)||(46931994-46932024)
chr1 (1-31)||(48993914-48993944)
chr1 (1-31)||(48994028-48994058)
chr1 (1-31)||(49444910-49444940)
chr1 (1-54)||(741508-741561)
chr1 (1-42)||(4579263-4579303)
chr1 (21-54)||(37155072-37155105)
chr1 (1-42)||(48498506-48498546)
chr1 (1-49)||(4579175-4579222)
chr1 (3-31)||(15220922-15220950)
chr1 (3-31)||(44706895-44706923)
chr1 (1-29)||(48498412-48498440)
[»] chr4 (26 HSPs)
chr4 (1-54)||(50384111-50384164)
chr4 (1-54)||(31430467-31430520)
chr4 (1-54)||(47404591-47404644)
chr4 (1-54)||(24006076-24006129)
chr4 (1-54)||(40789258-40789311)
chr4 (1-54)||(42375016-42375069)
chr4 (1-54)||(47404664-47404717)
chr4 (1-54)||(55090002-55090055)
chr4 (1-54)||(55090075-55090128)
chr4 (1-53)||(53954616-53954668)
chr4 (1-51)||(28693929-28693979)
chr4 (1-51)||(52028555-52028605)
chr4 (1-42)||(24006153-24006194)
chr4 (1-42)||(31430549-31430590)
chr4 (9-54)||(52028628-52028673)
chr4 (8-51)||(40789192-40789235)
chr4 (6-53)||(55089888-55089935)
chr4 (3-42)||(38714831-38714870)
chr4 (1-31)||(42375121-42375151)
chr4 (1-31)||(51265442-51265472)
chr4 (21-54)||(6271781-6271814)
chr4 (1-49)||(9712852-9712900)
chr4 (1-41)||(19184551-19184591)
chr4 (3-31)||(23444380-23444408)
chr4 (18-54)||(26186039-26186075)
chr4 (3-31)||(47661953-47661981)
[»] chr2 (19 HSPs)
chr2 (1-54)||(2893969-2894022)
chr2 (1-54)||(15011359-15011412)
chr2 (1-51)||(6217306-6217356)
chr2 (7-54)||(2828596-2828643)
chr2 (1-51)||(29925652-29925702)
chr2 (1-54)||(14229432-14229484)
chr2 (1-54)||(38933593-38933646)
chr2 (14-54)||(2828663-2828703)
chr2 (3-54)||(2894042-2894093)
chr2 (1-50)||(14464561-14464610)
chr2 (7-54)||(2143951-2143998)
chr2 (3-54)||(37762009-37762060)
chr2 (1-31)||(9172987-9173017)
chr2 (1-31)||(16514421-16514451)
chr2 (1-31)||(38933698-38933728)
chr2 (2-31)||(6217222-6217251)
chr2 (21-54)||(6721977-6722010)
chr2 (1-42)||(37961712-37961753)
chr2 (1-49)||(42971576-42971623)
[»] chr8 (13 HSPs)
chr8 (1-54)||(34541809-34541862)
chr8 (1-54)||(34229720-34229773)
chr8 (1-54)||(6296611-6296664)
chr8 (1-54)||(8243394-8243447)
chr8 (2-50)||(37618735-37618782)
chr8 (12-51)||(39850972-39851011)
chr8 (1-31)||(5033158-5033188)
chr8 (1-31)||(5033272-5033302)
chr8 (1-31)||(8243499-8243529)
chr8 (1-31)||(33841588-33841618)
chr8 (1-31)||(33841702-33841732)
chr8 (1-31)||(35441080-35441110)
chr8 (6-54)||(36766175-36766223)
[»] chr6 (9 HSPs)
chr6 (1-54)||(10521855-10521908)
chr6 (1-54)||(31654311-31654364)
chr6 (1-54)||(24618680-24618733)
chr6 (1-54)||(12343106-12343159)
chr6 (1-51)||(551171-551221)
chr6 (6-54)||(10521928-10521976)
chr6 (3-38)||(13766746-13766781)
chr6 (21-54)||(12343179-12343212)
chr6 (21-54)||(13043536-13043569)
[»] chr5 (16 HSPs)
chr5 (1-54)||(3899845-3899898)
chr5 (1-54)||(16971150-16971203)
chr5 (1-50)||(28818923-28818972)
chr5 (1-42)||(2953204-2953245)
chr5 (1-54)||(38134452-38134505)
chr5 (7-54)||(16439217-16439264)
chr5 (1-42)||(26662405-26662446)
chr5 (1-42)||(26934000-26934041)
chr5 (1-31)||(2953301-2953331)
chr5 (1-51)||(3180066-3180116)
chr5 (1-31)||(16971255-16971285)
chr5 (1-31)||(19655155-19655185)
chr5 (21-54)||(2953269-2953302)
chr5 (1-38)||(19598426-19598463)
chr5 (21-54)||(29699446-29699479)
chr5 (3-31)||(39777050-39777078)
[»] chr3 (21 HSPs)
chr3 (1-54)||(33689255-33689308)
chr3 (1-51)||(1801577-1801627)
chr3 (1-51)||(49414505-49414555)
chr3 (1-52)||(18321732-18321783)
chr3 (8-42)||(39385779-39385813)
chr3 (1-51)||(47677337-47677387)
chr3 (1-54)||(1272499-1272552)
chr3 (1-54)||(30476480-30476533)
chr3 (1-54)||(43139715-43139768)
chr3 (1-54)||(47677261-47677314)
chr3 (1-42)||(49418697-49418738)
chr3 (1-31)||(1272560-1272590)
chr3 (1-31)||(1801443-1801473)
chr3 (13-51)||(1801528-1801566)
chr3 (8-54)||(29031727-29031773)
chr3 (1-31)||(41752961-41752991)
chr3 (1-31)||(45103106-45103136)
chr3 (21-54)||(47492073-47492106)
chr3 (1-54)||(55223311-55223364)
chr3 (3-31)||(43139820-43139848)
chr3 (3-31)||(47492158-47492186)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-51)||(63763-63813)
scaffold0047 (5-54)||(63836-63885)
[»] chr7 (19 HSPs)
chr7 (1-51)||(29053396-29053446)
chr7 (1-54)||(27028799-27028852)
chr7 (1-54)||(34854701-34854754)
chr7 (1-54)||(41018234-41018287)
chr7 (3-54)||(42628303-42628354)
chr7 (1-42)||(45231860-45231901)
chr7 (3-42)||(4649328-4649367)
chr7 (3-42)||(29053322-29053361)
chr7 (7-54)||(4649401-4649448)
chr7 (1-31)||(11016866-11016896)
chr7 (1-31)||(11016980-11017010)
chr7 (1-51)||(30165329-30165379)
chr7 (1-31)||(34854806-34854836)
chr7 (1-31)||(38975802-38975832)
chr7 (1-31)||(41018339-41018369)
chr7 (1-31)||(42628406-42628436)
chr7 (1-31)||(45231961-45231991)
chr7 (1-49)||(10419542-10419590)
chr7 (3-47)||(25001355-25001399)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-54)||(49782-49835)
scaffold0016 (1-30)||(49700-49729)
[»] scaffold0481 (1 HSPs)
scaffold0481 (5-51)||(2897-2943)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-54)||(2292-2345)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-54)||(2292-2345)
[»] scaffold0586 (1 HSPs)
scaffold0586 (21-54)||(7126-7159)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-29)||(27217-27245)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 48823891 - 48824384
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctttggcgacatagagttggggaaacactatgttactaagaaaactaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||        |||||||||||||||||||    
T  48823891 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgggtgacatagagttgggg--------tgttactaagaaaactaat 48823982  T
Q  101 actaaaaaagtccaaactgaaccaattaaagacatacacgagtaacatcaattttataaggtattaattacttgttttatcaattatcacttcaaaatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48823983 actaaaaaagtccaaactgaaccaattaaagacatacacgagtaacatcaattttataaggtattaattacttgttttatcaattatcacttcaaaatga 48824082  T
Q  201 ggatatcatacagtgccatgtagcataaggaaaataagatctcttttctaatgctgcataattcatagtgaagttgtcttgattttgctagtttttgagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48824083 ggatatcatacagtgccatgtagcataaggaaaataagatctcttttctaatgctgcataattcatagtgaagttgtcttgattttgctagtttttgagc 48824182  T
Q  301 aagcaagaagttgtgaattttctcctcgaccttttgtggtttgcactgaatgaaaggaacaaacaaatatgtacttg---nnnnnnnnttcaatgcagac 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||    
T  48824183 aagcaagaagttgtgaattttctcctcgaccttttgtggtttgcactgaatgaaaggaacaaacaaatatgtacttgaaaaaaaaaaaatcaatgcagac 48824282  T
Q  398 tctgagtaagaatatatgatgcaaagagaacgattgtatcatgtctttttactttctcatacatttactctatgaatggaaaacaacttaacaagtgcgt 497  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48824283 tctgagtgagaatatatgatgcaaagagaacgattgtatcatgtctttttactttctcatacatttactctatgaatggaaaacaacttaacaagtgcgt 48824382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46333952 - 46334005
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  46333952 acttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgctt 46334005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49445043 - 49444990
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  49445043 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 49444990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34062217 - 34062268
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34062217 ttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 34062268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4609128 - 4609075
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  4609128 acttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgctt 4609075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28928785 - 28928838
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  28928785 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgctt 28928838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38674511 - 38674564
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  38674511 acttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgctt 38674564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46334078 - 46334025
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  46334078 acttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgctt 46334025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 29371376 - 29371424
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29371376 ttgggtgacatagagttaggtgacattggccaatcacaatgtcacaatg 29371424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 38674633 - 38674582
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  38674633 ttgggtgacatagagttgggtgatattggccaatcataatgtcacaatgctt 38674582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8337983 - 8337933
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  8337983 acttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatg 8337933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37155179 - 37155129
Alignment:
Q  1 acttgggtgaca-tagagttgggtgacattggccaatcacaatatcacaat 50  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37155179 acttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaat 37155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9157442 - 9157389
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  9157442 acttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgctt 9157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15220817 - 15220870
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||| ||||||||||||||||| ||||||| || |||||||||||    
T  15220817 acttgggtgacatggagttgggtgacattggtcaatcacgatctcacaatgctt 15220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34062339 - 34062291
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  34062339 ttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatg 34062291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 1819502 - 1819548
Alignment:
Q  8 tgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||    
T  1819502 tgacatagagttgggtgacattgatcaatcacaatgtcacaatgctt 1819548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 36290428 - 36290462
Alignment:
Q  8 tgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||||||||||||||||||||||    
T  36290428 tgacatagagttgggtgacattggccaatcacaat 36290462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2573161 - 2573214
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||| |||||||||||| |||| |||| | |||||||||||||||||||||    
T  2573161 acttgggggacatagagttgagtgatattgactaatcacaatatcacaatgctt 2573214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 19711192 - 19711237
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatgc 52  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||    
T  19711192 gtgacatagagttgggtgacattgaccaatcacaatgttacaatgc 19711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32157657 - 32157604
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||| |||||||||||| ||||||||||| |||||||| | |||||||||||    
T  32157657 acttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgctt 32157604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 47303521 - 47303477
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatg 47303477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5694896 - 5694939
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatat 44  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  5694896 acttgagtgacatagagtttggtgacattggtcaatcacaatat 5694939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 29179738 - 29179708
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  29179738 acttgggtgacatagagttgggtgacattgg 29179708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 36290548 - 36290518
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  36290548 acttgggtgacatagagttgggtgacattgg 36290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 46931994 - 46932024
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  46931994 acttgggtgacatagagttgggtgacattgg 46932024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 48993914 - 48993944
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  48993914 acttgggtgacatagagttgggtgacattgg 48993944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 48994058 - 48994028
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  48994058 acttgggtgacatagagttgggtgacattgg 48994028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 49444910 - 49444940
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  49444910 acttgggtgacatagagttgggtgacattgg 49444940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 741508 - 741561
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| |||| ||||| || |||||||||| ||||||||||| |||||||||||    
T  741508 acttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgctt 741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4579303 - 4579263
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  4579303 acttgggtgacatagaattgg-tgacattggccaatcacaat 4579263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 37155072 - 37155105
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  37155072 ggtgacattggccaatcacaatgtcacaatgctt 37155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48498546 - 48498506
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  48498546 acttgggtgacatagagtt-ggtgacattgaccaatcacaat 48498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4579175 - 4579222
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 49  Q
    |||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  4579175 acttgggtgacatagaattgg-tgacattggccaaccacaatgtcacaa 4579222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 15220950 - 15220922
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  15220950 ttgggtgacatagagttgggtgacattgg 15220922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 44706923 - 44706895
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  44706923 ttgggtgacatagagttgggtgacattgg 44706895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 48498412 - 48498440
Alignment:
Q  1 acttgggtgacatagagttgggtgacatt 29  Q
    |||||||||||||||||||||||||||||    
T  48498412 acttgggtgacatagagttgggtgacatt 48498440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 50384111 - 50384164
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50384111 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgctt 50384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31430467 - 31430520
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  31430467 acttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgctt 31430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47404591 - 47404644
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  47404591 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgctt 47404644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24006076 - 24006129
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  24006076 acttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgctt 24006129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40789311 - 40789258
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgctt 40789258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42375016 - 42375069
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgctt 42375069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47404717 - 47404664
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  47404717 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgctt 47404664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 55090002 - 55090055
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  55090002 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgctt 55090055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 55090128 - 55090075
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  55090128 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgctt 55090075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53954616 - 53954668
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgct 53  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  53954616 acttgggtgatataaagttgggtgacattggccaatcacaatgtcacaatgct 53954668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28693929 - 28693979
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  28693929 acttgggtgacataaagttggatgacattgaccaatcacaatatcacaatg 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52028555 - 52028605
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  52028555 acttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatg 52028605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24006194 - 24006153
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  24006194 acttgggtgacatagagttgggtgacattgaccaatcacaat 24006153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31430590 - 31430549
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  31430590 acttgggtgacatagagttgggtgacattggccaattacaat 31430549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 52028673 - 52028628
Alignment:
Q  9 gacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  52028673 gacatagaattgggtgacattggccaatcacaatgtcacaatgctt 52028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 40789192 - 40789235
Alignment:
Q  8 tgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  40789192 tgacatagagtttggtgacattggccaatcacaatgtcacaatg 40789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 55089888 - 55089935
Alignment:
Q  6 ggtgacatagagttgggtgacattggccaatcacaatatcacaatgct 53  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  55089888 ggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 38714831 - 38714870
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  38714831 ttgggtgacatagagttaggtgatattggccaatcacaat 38714870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42375151 - 42375121
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  42375151 acttgggtgacatagagttgggtgacattgg 42375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 51265442 - 51265472
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  51265442 acttgggtgacatagagttgggtgacattgg 51265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 6271814 - 6271781
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  6271814 ggtgacattggccaatcacaatgtcacaatgctt 6271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9712852 - 9712900
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 49  Q
    |||||||||||||||  || |||||||||||||||||| ||| ||||||    
T  9712852 acttgggtgacatagcatttggtgacattggccaatcagaatgtcacaa 9712900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19184591 - 19184551
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaa 41  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  19184591 acttgggtgacgtaaagttgggtgacattggtcaatcacaa 19184551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 23444408 - 23444380
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  23444408 ttgggtgacatagagttgggtgacattgg 23444380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 26186039 - 26186075
Alignment:
Q  18 ttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||| |||||||||| |||||||||||    
T  26186039 ttgggtgacattggtcaatcacaatgtcacaatgctt 26186075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 47661981 - 47661953
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  47661981 ttgggtgacatagagttgggtgacattgg 47661953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2893969 - 2894022
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2893969 acttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgctt 2894022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15011412 - 15011359
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgctt 15011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6217356 - 6217306
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6217356 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 6217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 2828596 - 2828643
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  2828596 gtgacatagagttgggtgacattggccaatcacaatgtcaaaatgctt 2828643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29925702 - 29925652
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  29925702 acttgggtaacatagagttgggtgacattggccaatcacaatgccacaatg 29925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14229484 - 14229432
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  14229484 acttgggtgacatagagttggatgacattgg-caatcacaatgtcacaatgctt 14229432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38933593 - 38933646
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  38933593 acttaggtgacatagagttgggtgacattgaccaatcacaatgccacaatgctt 38933646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2828703 - 2828663
Alignment:
Q  14 agagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 2894093 - 2894042
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  2894093 ttgggtgacatagagttggatgacattggtcaatcacagtgtcacaatgctt 2894042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14464561 - 14464610
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 50  Q
    ||||| |||||||||||||| |||||||||| |||||||||| |||||||    
T  14464561 acttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaat 14464610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 2143998 - 2143951
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2143998 gtgacatagagttgagtgacgttggccaatcacaatgtcataatgctt 2143951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 37762009 - 37762060
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||| |||||||| ||||||||| ||||||||||| || ||||||||    
T  37762009 ttgggtgacgtagagttgagtgacattgaccaatcacaatgtcgcaatgctt 37762060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9172987 - 9173017
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  9172987 acttgggtgacatagagttgggtgacattgg 9173017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16514421 - 16514451
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  16514421 acttgggtgacatagagttgggtgacattgg 16514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38933728 - 38933698
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  38933728 acttgggtgacatagagttgggtgacattgg 38933698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 6217222 - 6217251
Alignment:
Q  2 cttgggtgacatagagttgggtgacattgg 31  Q
    ||||||||||||||||||||||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattgg 6217251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6721977 - 6722010
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||| |||||||||||||||||||||||    
T  6721977 ggtgacattgaccaatcacaatatcacaatgctt 6722010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37961712 - 37961753
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  37961712 acttgggtggcatagagttgggtgacattgaccgatcacaat 37961753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42971623 - 42971576
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 49  Q
    |||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  42971623 acttgggtgacataaaattgg-tgacattgaccaatcacaatatcacaa 42971576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34541809 - 34541862
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  34541809 acttgggtgacataaagttgggtgacattggccaatcataatatcacaatgctt 34541862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34229773 - 34229720
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  34229773 acttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgctt 34229720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6296611 - 6296664
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  6296611 acttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgctt 6296664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8243394 - 8243447
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||| |||||||||  ||||||||||  ||||||||||    
T  8243394 acttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgctt 8243447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 37618735 - 37618782
Alignment:
Q  2 cttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 50  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  37618735 cttgggtgacatagaattgg-tgacattggccaatcacaatgtcacaat 37618782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 39850972 - 39851011
Alignment:
Q  12 atagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  39850972 atagagttgggtgacattggccaatcacaatgccacaatg 39851011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5033158 - 5033188
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  5033158 acttgggtgacatagagttgggtgacattgg 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5033302 - 5033272
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  5033302 acttgggtgacatagagttgggtgacattgg 5033272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8243529 - 8243499
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  8243529 acttgggtgacatagagttgggtgacattgg 8243499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33841588 - 33841618
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  33841588 acttgggtgacatagagttgggtgacattgg 33841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 33841732 - 33841702
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  33841732 acttgggtgacatagagttgggtgacattgg 33841702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35441110 - 35441080
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  35441110 acttgggtgacatagagttgggtgacattgg 35441080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 36766175 - 36766223
Alignment:
Q  6 ggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||| | |||||||  ||| |||||||    
T  36766175 ggtgacatagagttgggtgacattggtcgatcacaacgtcataatgctt 36766223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10521855 - 10521908
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  10521855 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgctt 10521908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31654311 - 31654364
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  31654311 acttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgctt 31654364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24618733 - 24618680
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  24618733 acttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgctt 24618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12343106 - 12343159
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||| | ||||||||||  ||||||||||    
T  12343106 acttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgctt 12343159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 551171 - 551221
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  551171 acttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatg 551221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 10521976 - 10521928
Alignment:
Q  6 ggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||| |||||||||| |||||||||| ||| |||||||    
T  10521976 ggtgacatagagttgagtgacattggtcaatcacaatgtcataatgctt 10521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 13766746 - 13766781
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatca 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  13766746 ttgggtgacatagagttgggtgacattgaccaatca 13766781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 12343212 - 12343179
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  12343212 ggtgacattggccaatcacaatgtcacaatgctt 12343179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 13043569 - 13043536
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  13043569 ggtgacattggctaatcacaatatcacaatgctt 13043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3899845 - 3899898
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3899845 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 3899898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16971150 - 16971203
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  16971150 acttgggtgacatagacttgggtgacattggccaatcacaatgccacaatgctt 16971203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28818923 - 28818972
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 50  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  28818923 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaat 28818972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2953204 - 2953245
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  2953204 acttgggtgacatagagttgggtgacattggtcaatcacaat 2953245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38134505 - 38134452
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  38134505 acttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgctt 38134452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 16439264 - 16439217
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgctt 16439217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26662405 - 26662446
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  26662405 acttgtgtgacatagagttgggtgacattgaccaatcacaat 26662446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26934000 - 26934041
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  26934000 acttgtgtgacatagagttgggtgacattgaccaatcacaat 26934041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2953331 - 2953301
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  2953331 acttgggtgacatagagttgggtgacattgg 2953301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3180066 - 3180116
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  3180066 acttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatg 3180116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16971285 - 16971255
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  16971285 acttgggtgacatagagttgggtgacattgg 16971255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 19655155 - 19655185
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  19655155 acttgggtgacatagagttgggtgacattgg 19655185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 2953302 - 2953269
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  2953302 ggtgacattggccaatcacaatgtcacaatgctt 2953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19598463 - 19598426
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatca 38  Q
    |||||||||||||||||||||||||||||  |||||||    
T  19598463 acttgggtgacatagagttgggtgacattaaccaatca 19598426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 29699479 - 29699446
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  29699479 ggtgacattggccaatcacaatgtcacaatgctt 29699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 39777050 - 39777078
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattgg 39777078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33689308 - 33689255
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  33689308 acttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgctt 33689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1801627 - 1801577
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1801627 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 1801577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49414555 - 49414505
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  49414555 acttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18321783 - 18321732
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgc 52  Q
    |||||| |||||||||||||| ||||||||| |||||||||| |||||||||    
T  18321783 acttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgc 18321732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 39385813 - 39385779
Alignment:
Q  8 tgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||||||||||||||||||||||    
T  39385813 tgacatagagttgggtgacattggccaatcacaat 39385779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47677387 - 47677337
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||| ||||||||||||||||||||||||  |||||||||| ||||||||    
T  47677387 acttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatg 47677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1272499 - 1272552
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||| |||||||||||||| |||||||||||||||||| | | |||||||||||    
T  1272499 acttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgctt 1272552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30476480 - 30476533
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| |||||| |||| | |||||||||||||||||||||| |||||||||||    
T  30476480 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgctt 30476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43139715 - 43139768
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| |||||||||||||||||||||| || |||||||||| ||| |||||||    
T  43139715 acttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgctt 43139768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47677261 - 47677314
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| ||||||||||||| |||||||||| || |||||||| |||||||||||    
T  47677261 acttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgctt 47677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49418697 - 49418738
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  49418697 acttgggtgacatagagttgggtgatattggtcaatcacaat 49418738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1272590 - 1272560
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  1272590 acttgggtgacatagagttgggtgacattgg 1272560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1801443 - 1801473
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  1801443 acttgggtgacatagagttgggtgacattgg 1801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 1801566 - 1801528
Alignment:
Q  13 tagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  1801566 tagagttgggtgacattggccaatcacaatgccacaatg 1801528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 29031727 - 29031773
Alignment:
Q  8 tgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  29031727 tgacatagagttaggtgatattggtcaatcacaatgtcacaatgctt 29031773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41752961 - 41752991
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  41752961 acttgggtgacatagagttgggtgacattgg 41752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 45103106 - 45103136
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  45103106 acttgggtgacatagagttgggtgacattgg 45103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 47492073 - 47492106
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  47492073 ggtgacattggccaatcacaatgtcacaatgctt 47492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 55223364 - 55223311
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||  |||| ||||| |||||| ||| |||||||||||    
T  55223364 acttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgctt 55223311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 43139848 - 43139820
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  43139848 ttgggtgacatagagttgggtgacattgg 43139820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 47492186 - 47492158
Alignment:
Q  3 ttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||    
T  47492186 ttgggtgacatagagttgggtgacattgg 47492158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 63763 - 63813
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  63763 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 63813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 63885 - 63836
Alignment:
Q  5 gggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  63885 gggtgatatagagttgggtgacattggccaatcacaatgtcacaatgctt 63836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29053446 - 29053396
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  29053446 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 29053396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27028799 - 27028852
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  27028799 acttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgctt 27028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34854701 - 34854754
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  34854701 acttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgctt 34854754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41018234 - 41018287
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  41018234 acttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgctt 41018287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 42628303 - 42628354
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  42628303 ttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgctt 42628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45231860 - 45231901
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  45231860 acttgggtgacatagagttgggtgacattgaccaatcacaat 45231901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 4649328 - 4649367
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4649328 ttgggtgacatagagttgggtgacattggtcaatcacaat 4649367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 29053322 - 29053361
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaat 42  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29053322 ttgggtgacatagagtttggtgacattggccaatcacaat 29053361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 4649448 - 4649401
Alignment:
Q  7 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||||||||||| ||||||||||| |||||||||| |||| ||||||    
T  4649448 gtgacatagagtttggtgacattggtcaatcacaatgtcacgatgctt 4649401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11016866 - 11016896
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  11016866 acttgggtgacatagagttgggtgacattgg 11016896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11017010 - 11016980
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattgg 11016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30165379 - 30165329
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||| |||| |||||||||||||||||||| |||||||||| ||| ||||    
T  30165379 acttgtgtgatatagagttgggtgacattggtcaatcacaatgtcataatg 30165329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34854836 - 34854806
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  34854836 acttgggtgacatagagttgggtgacattgg 34854806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 38975802 - 38975832
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  38975802 acttgggtgacatagagttgggtgacattgg 38975832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41018369 - 41018339
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  41018369 acttgggtgacatagagttgggtgacattgg 41018339  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42628436 - 42628406
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  42628436 acttgggtgacatagagttgggtgacattgg 42628406  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 45231991 - 45231961
Alignment:
Q  1 acttgggtgacatagagttgggtgacattgg 31  Q
    |||||||||||||||||||||||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattgg 45231961  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10419590 - 10419542
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 49  Q
    |||||||| |||||||||| ||||||||||||  |||||||| ||||||    
T  10419590 acttgggtaacatagagtttggtgacattggctgatcacaatgtcacaa 10419542  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 25001355 - 25001399
Alignment:
Q  3 ttgggtgacatagagttgggtgacattggccaatcacaatatcac 47  Q
    |||||||| |||||||| ||||||||||| |||||||||| ||||    
T  25001355 ttgggtgaaatagagtttggtgacattggacaatcacaatgtcac 25001399  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49835 - 49782
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  49835 acttcggtgacatagagttaggtgacattggccaatcacaatgccacaatgctt 49782  T

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Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 49700 - 49729
Alignment:
Q  1 acttgggtgacatagagttgggtgacattg 30  Q
    ||||||||||||||||||||||||||||||    
T  49700 acttgggtgacatagagttgggtgacattg 49729  T

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Target: scaffold0481 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 2897 - 2943
Alignment:
Q  5 gggtgacatagagttgggtgacattggccaatcacaatatcacaatg 51  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  2897 gggtgacatagagttgggtgatattgaccaatcacaatgtcacaatg 2943  T

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Target: scaffold1033 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2345 - 2292
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| |||||||||| ||||| |||||||  |||||||||| |||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgctt 2292  T

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Target: scaffold1029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2345 - 2292
Alignment:
Q  1 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 54  Q
    ||||| |||||||||| ||||| |||||||  |||||||||| |||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgctt 2292  T

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Target: scaffold0586 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 7159 - 7126
Alignment:
Q  21 ggtgacattggccaatcacaatatcacaatgctt 54  Q
    |||||||||||||||||||||| |||||||||||    
T  7159 ggtgacattggccaatcacaatgtcacaatgctt 7126  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27217 - 27245
Alignment:
Q  1 acttgggtgacatagagttgggtgacatt 29  Q
    |||||||||||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacatt 27245  T

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