View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_high_6 (Length: 438)
Name: NF14254_high_6
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 166 - 425
Target Start/End: Complemental strand, 19460280 - 19460021
Alignment:
| Q |
166 |
aaagcagtggaagactttgaattttgaagtcagtaatttgaatggcttggaatgtgaagtcagtgacatgacataactgagtgagtgagtttggtaggaa |
265 |
Q |
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| T |
19460280 |
aaagtagtggaagactttgaattttgaaatcagtaatttgaatggcttggtatgtgaagtcagtgacatgacataactgagtgagtgagtttggtaggaa |
19460181 |
T |
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| Q |
266 |
aataaaagaatgttagcttttggaaaagtagtggtagactttgaattttgaagtcagtggtattatgaatgtttgaatcttatgttttaatatttgctga |
365 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
19460180 |
aataaaagaatgttagcttttggaaaagtagtggaagactttgaattttgatgtcagtgatattatgaatgtttgaatcttatgttttaatatttgctaa |
19460081 |
T |
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| Q |
366 |
agtcgctttttgataggacattgcccgttgctgagaatgttcgccttaaagcctctacct |
425 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19460080 |
agtccctttttgataggacatagcccgttgctgagaatgttcgccttaaagcctctacct |
19460021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 96 - 323
Target Start/End: Complemental strand, 19460474 - 19460247
Alignment:
| Q |
96 |
tgtaattgatttcatttactatttctagttcaaattggtatgtcattgttagaaagacgatggcttgcataaagcagtggaagactttgaattttgaagt |
195 |
Q |
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| T |
19460474 |
tgtaattgatttcatttactatttcaagttcaaattggtatgtcattgttagaaagaagatggcttgcataaagcagtggaagactttgaattttgaaat |
19460375 |
T |
|
| Q |
196 |
cagtaatttgaatggcttggaatgtgaagtcagtgacatgacataactgagtgagtgagtttggtaggaaaataaaagaatgttagcttttggaaaagta |
295 |
Q |
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| T |
19460374 |
cagtaatttgaatggcttggtatgtgaagtcagtgacatgacataactgagtgagtgagtttggtaggaaaataaaagaatgttagcttttggaaaagta |
19460275 |
T |
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| Q |
296 |
gtggtagactttgaattttgaagtcagt |
323 |
Q |
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|||| ||||||||||||||||| ||||| |
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| T |
19460274 |
gtggaagactttgaattttgaaatcagt |
19460247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 138 - 363
Target Start/End: Complemental strand, 18114894 - 18114668
Alignment:
| Q |
138 |
tcattgttagaaagacgatggcttgcataaagcagtggaagactttgaattttgaagtcagtaatttgaatggcttggaatgtgaagtcagtgacatgac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
18114894 |
tcattgttagaaagacgatggcttgcataaagcagtggaagactttgaattttgaaatcattaatttgaatggcttggtatgtgaagtcagtgacatgac |
18114795 |
T |
|
| Q |
238 |
ataactgagtgagtgagtttggtaggaaaataaaagaatgttagcttttgg-aaaagtagtggtagactttgaattttgaagtcagtggtattatgaatg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
18114794 |
ataactgagtgagtgagtttggtaggaaaataaaagaatgttagctattggaaaaaacagtggaagactttgaattttgaagtcagtgatattatgaatg |
18114695 |
T |
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| Q |
337 |
tttgaatcttatgttttaatatttgct |
363 |
Q |
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||||||||||||||||||||||||||| |
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| T |
18114694 |
tttgaatcttatgttttaatatttgct |
18114668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 17722188 - 17722305
Alignment:
| Q |
301 |
agactttgaattttgaagtcagtggtattatgaatgtttgaatcttatgttttaatatttgctgaagtcgctttttgataggacattgcccgttgctgag |
400 |
Q |
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||||||||||||||||| |||||| ||| ||||||||||| |||||||||| ||||||| | ||||| ||||||||||||| || ||| |||||| || |
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| T |
17722188 |
agactttgaattttgaaatcagtgatat---gaatgtttgaaccttatgttttcatatttgttaaagtccctttttgataggagatagcctgttgctaag |
17722284 |
T |
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| Q |
401 |
aatgttcgccttaaagcctct |
421 |
Q |
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|||||||| |||||||||||| |
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| T |
17722285 |
aatgttcgacttaaagcctct |
17722305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 19023417 - 19023534
Alignment:
| Q |
301 |
agactttgaattttgaagtcagtggtattatgaatgtttgaatcttatgttttaatatttgctgaagtcgctttttgataggacattgcccgttgctgag |
400 |
Q |
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||||||||||||||||| |||||| ||| ||||||||||| |||||||||| ||||||| | ||||| ||||||||||||| || ||| |||||| || |
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| T |
19023417 |
agactttgaattttgaaatcagtgatat---gaatgtttgaaccttatgttttcatatttgttaaagtccctttttgataggagatagcctgttgctaag |
19023513 |
T |
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| Q |
401 |
aatgttcgccttaaagcctct |
421 |
Q |
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|||||||| |||||||||||| |
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| T |
19023514 |
aatgttcgacttaaagcctct |
19023534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 17722159 - 17722220
Alignment:
| Q |
148 |
aaagacgatggcttgcataaagcagtggaagactttgaattttgaagtcagtaatttgaatg |
209 |
Q |
| |
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||||||| ||||||| | |||||| ||||||||||||||||||||| ||||| || |||||| |
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| T |
17722159 |
aaagacgttggcttggaaaaagcaatggaagactttgaattttgaaatcagtgatatgaatg |
17722220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 19023388 - 19023449
Alignment:
| Q |
148 |
aaagacgatggcttgcataaagcagtggaagactttgaattttgaagtcagtaatttgaatg |
209 |
Q |
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||||||| ||||||| | |||||| ||||||||||||||||||||| ||||| || |||||| |
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| T |
19023388 |
aaagacgttggcttggaaaaagcaatggaagactttgaattttgaaatcagtgatatgaatg |
19023449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 16675677 - 16675606
Alignment:
| Q |
350 |
ttttaatatttgctgaagtcgctttttgataggacattgcccgttgctgagaatgttcgccttaaagcctct |
421 |
Q |
| |
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||||||||||| || ||||| ||| ||||||||||| |||||||||| ||||||| ||||||||| |||| |
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| T |
16675677 |
ttttaatatttactaaagtccgtttgtgataggacatagcccgttgctcagaatgtatgccttaaagactct |
16675606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 17728670 - 17728706
Alignment:
| Q |
247 |
tgagtgagtttggtaggaaaataaaagaatgttagct |
283 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||| |
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| T |
17728670 |
tgagtgagtttggtaggaaaataaaataatattagct |
17728706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 19029899 - 19029935
Alignment:
| Q |
247 |
tgagtgagtttggtaggaaaataaaagaatgttagct |
283 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |
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| T |
19029899 |
tgagtgagtttggtaggaaaataaaataatattagct |
19029935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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