View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_13 (Length: 348)
Name: NF14254_low_13
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 580986 - 580639
Alignment:
| Q |
1 |
ttgtgctacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgattcgaatttg |
100 |
Q |
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| T |
580986 |
ttgtgatacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgactcgaatttg |
580887 |
T |
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| Q |
101 |
atagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagccg |
200 |
Q |
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| T |
580886 |
atagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagctg |
580787 |
T |
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| Q |
201 |
aagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatga |
300 |
Q |
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| T |
580786 |
aagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatga |
580687 |
T |
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| Q |
301 |
tttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgct |
348 |
Q |
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| T |
580686 |
tttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgct |
580639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 1214381 - 1214316
Alignment:
| Q |
176 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatata |
241 |
Q |
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| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtggtata |
1214316 |
T |
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