View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_15 (Length: 327)
Name: NF14254_low_15
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 4159885 - 4159597
Alignment:
| Q |
1 |
aggatgaaacaaaagaagaatgagcgtggatgaatagaacctaaaagagaaggcattttcatttttgtgctatggaaatggaagnnnnnnngaatgagag |
100 |
Q |
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| T |
4159885 |
aggatgaaacaaaagaagaatgagcgtggatgaatagaacctaaaagagaaggcattttcatttttgtgctatggaaatggaagaaaaaaagaatgagag |
4159786 |
T |
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| Q |
101 |
tttaattggttatactactatttatatgtgtgattcatatgttgcaggaattaatattttctgagtacatataattatatttctctgatcatggataatg |
200 |
Q |
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| T |
4159785 |
tttaattggttatactactatttatatgtgtgattcatatgttgcaggaat--------------------taattatatttctctgatcatggataatg |
4159706 |
T |
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| Q |
201 |
acccataactattacaagtttattttaacatcagaatatctcatgcaatc----ttctgaactagaaaattctcacgaaaatagtagtacaagtactagg |
296 |
Q |
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| T |
4159705 |
acccataactattacaagtttattttaacatcagaatatctcatgcaatcctggttctgaactagaaaattctcacgaaattagtagtacaagtacaagg |
4159606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4152679 - 4152602
Alignment:
| Q |
1 |
aggatgaaacaaaagaagaatgagcgtggatgaatagaacctaaaagagaaggcattttcatttttgtgctatggaaa |
78 |
Q |
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|||| |||||||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||| ||| |||| |
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| T |
4152679 |
aggaggaaacaaaagaagaatgatcgtggaggtaaagaacctagaaaagaaggcattttcatttttgtgatatagaaa |
4152602 |
T |
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