View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14254_low_17 (Length: 293)
Name: NF14254_low_17
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 39001322 - 39001074
Alignment:
| Q |
18 |
atgaagtacttaataatctaaaaggccataagcatggtttagaaagaataagaaaagggaataaaattgaataaataacatatgtttaatatacgaactt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
39001322 |
atgaagtacttt-taatctaaaaggccataagcatggtttagaaagaataagaaaagggcataaa----------taacatatgtttaatatatgaactt |
39001234 |
T |
|
| Q |
118 |
tatgactgcattttgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39001233 |
tatgactgcattttgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaac |
39001134 |
T |
|
| Q |
218 |
agtggaaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaag |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39001133 |
agtggaaccagaaccaatgttaataatagctccttttttgttcttaatcatactaggaag |
39001074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 38996596 - 38996443
Alignment:
| Q |
124 |
tgcattttgataaataaaaaca-cacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtgg |
222 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||| | ||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| ||| |
|
|
| T |
38996596 |
tgcattttgataaataaaaagaacaaatttatagagata-cttacgcttttgatgctgcataaattgtgacaagaggaaaagaaggaagtacaacactgg |
38996498 |
T |
|
| Q |
223 |
aaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaag |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
38996497 |
aaccagaaccaatgttaataatagctccttttctcttcttaatcatactaggaag |
38996443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University