View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_19 (Length: 286)
Name: NF14254_low_19
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4647024 - 4646757
Alignment:
| Q |
1 |
aaacatggttggtcttgtttgagatagnnnnnnnggatatgtgccatgaattcaaatttaaatgagtgatcgaccaatcatgagaaaaataaggaaatca |
100 |
Q |
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| T |
4647024 |
aaacatggttggtcttgtttgagatagaaaaaa-ggatatgtgccatgaattcaaatttaaatgagtgatcgaccaatcatgagaaaaataaggaaatca |
4646926 |
T |
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| Q |
101 |
tatattaatatagtagatgagaaaggattaaattggaggaagaagccttacatgggaaagagaaatagaaagagcaacaaaatacataagaatattttgg |
200 |
Q |
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| T |
4646925 |
tatattaatatagtagatgagaaaggattaaattggaggaagaagccttgcatgggaaagagaaatagaaagagcaacaaaatacataagaatattttgg |
4646826 |
T |
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| Q |
201 |
agattttgggattacttggagttggagaaaagtgtctcaattttaaagtaaaaatgcatccccttatat |
269 |
Q |
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| T |
4646825 |
agattttgggattacttggagttggagaaaagtgtctcaattttaaagtaaaaatgcatccccttatat |
4646757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 4655436 - 4655373
Alignment:
| Q |
35 |
ggatatgtgccatgaattcaaatttaaatgagtgatcgaccaatcatgagaaaaataaggaaat |
98 |
Q |
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| T |
4655436 |
ggatatgtgccatgaatttaaatttaaatgagtgatcgcccaatcatgagactaataaggaaat |
4655373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 4655276 - 4655207
Alignment:
| Q |
194 |
attttggagattttgggattacttggagttggagaaaagtgtctc-aattttaaagtaaaaatgcatccc |
262 |
Q |
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| T |
4655276 |
attttggagactttaaaattacatggagttggagaaaagtgtctcaaatttgaaagtaaaaatgcttccc |
4655207 |
T |
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