View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14254_low_22 (Length: 249)

Name: NF14254_low_22
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14254_low_22
NF14254_low_22
[»] chr6 (7 HSPs)
chr6 (136-211)||(2307504-2307579)
chr6 (137-207)||(14711326-14711396)
chr6 (136-203)||(2340185-2340252)
chr6 (136-203)||(2351638-2351705)
chr6 (140-211)||(2369019-2369090)
chr6 (137-204)||(14753400-14753467)
chr6 (140-204)||(2363273-2363337)
[»] scaffold0408 (1 HSPs)
scaffold0408 (137-204)||(596-663)
[»] chr3 (1 HSPs)
chr3 (137-204)||(4305968-4306035)
[»] chr4 (1 HSPs)
chr4 (137-203)||(5804232-5804298)
[»] chr1 (1 HSPs)
chr1 (27-110)||(28667361-28667442)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 2307504 - 2307579
Alignment:
Q  136 cactcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggatgtgccct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  2307504 cactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccct 2307579  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 14711396 - 14711326
Alignment:
Q  137 actcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggatgtg 207  Q
    ||||||||||||||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||||||    
T  14711396 actcataaagatgttgatgttagaggtaatcattttgagcttttaccatttggaagtggaagaaggatgtg 14711326  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 2340185 - 2340252
Alignment:
Q  136 cactcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaagga 203  Q
    ||||||||||| |||||||||||| |||| | ||||||  |||||||||||||||||||| |||||||    
T  2340185 cactcataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaagga 2340252  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 2351638 - 2351705
Alignment:
Q  136 cactcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaagga 203  Q
    ||||||||||| |||||||||||| |||| | ||||||  ||| |||||||||||||||| |||||||    
T  2351638 cactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaagga 2351705  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 2369019 - 2369090
Alignment:
Q  140 cataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggatgtgccct 211  Q
    |||||||| ||||||||||| |||  | |||||| |||||||||||||||| |||| |||||||| ||||||    
T  2369019 cataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccct 2369090  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 14753467 - 14753400
Alignment:
Q  137 actcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggat 204  Q
    |||||||||||||||||||||| ||||  | |||||| | | ||||||||||||||||| ||||||||    
T  14753467 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggat 14753400  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 2363273 - 2363337
Alignment:
Q  140 cataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggat 204  Q
    ||||||||| ||||| |||| |||| | |||||| |||||||||||||||| |||| ||||||||    
T  2363273 cataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggat 2363337  T

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Target: scaffold0408 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 596 - 663
Alignment:
Q  137 actcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggat 204  Q
    |||||||||||||||||||||| ||||  | |||||| | | ||||||||||||||||| ||||||||    
T  596 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggat 663  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 4305968 - 4306035
Alignment:
Q  137 actcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaaggat 204  Q
    |||||||||| ||||||||||| ||||  | |||||| | ||||||||||||||||||| ||||||||    
T  4305968 actcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggat 4306035  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 5804298 - 5804232
Alignment:
Q  137 actcataaagatgttgatgttaggggtagtaattttgtgctattaccatttggaagtggcagaagga 203  Q
    |||||||||||| ||||||||||||||| | ||||||  |||  ||||||||||||||| |||||||    
T  5804298 actcataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaagga 5804232  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 28667361 - 28667442
Alignment:
Q  27 tgtatatattttgtgtttgatcattcctcgaacgaaatatttacctagtaacatagaagaaaaacaaatgacaagtatacttgc 110  Q
    ||||||||||| |||||||||||| |||| ||| ||||     ||||||||||||||||||||  |||| |||||| |||||||    
T  28667361 tgtatatatttagtgtttgatcatgcctcaaacaaaattaccgcctagtaacatagaagaaaa--aaattacaagtgtacttgc 28667442  T

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