View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14254_low_25 (Length: 232)

Name: NF14254_low_25
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14254_low_25
NF14254_low_25
[»] chr4 (14 HSPs)
chr4 (10-213)||(4907205-4907408)
chr4 (16-213)||(29756384-29756581)
chr4 (10-213)||(4933074-4933277)
chr4 (16-212)||(35785276-35785480)
chr4 (16-213)||(7108194-7108401)
chr4 (63-213)||(55019158-55019304)
chr4 (80-213)||(4906241-4906382)
chr4 (80-213)||(4932110-4932251)
chr4 (80-213)||(29757413-29757554)
chr4 (63-156)||(38158419-38158512)
chr4 (10-213)||(23703616-23703809)
chr4 (80-213)||(22674264-22674405)
chr4 (80-213)||(35786483-35786624)
chr4 (80-156)||(23702579-23702653)
[»] chr1 (12 HSPs)
chr1 (16-213)||(26734540-26734737)
chr1 (16-213)||(42300565-42300770)
chr1 (16-213)||(52793816-52794021)
chr1 (80-206)||(42301423-42301557)
chr1 (63-213)||(8322632-8322791)
chr1 (63-147)||(28253423-28253507)
chr1 (88-212)||(9626583-9626715)
chr1 (63-209)||(8323227-8323382)
chr1 (63-145)||(27524457-27524539)
chr1 (155-213)||(31810102-31810160)
chr1 (155-213)||(31815659-31815717)
chr1 (63-111)||(31815559-31815607)
[»] chr8 (7 HSPs)
chr8 (16-213)||(359062-359260)
chr8 (63-213)||(21143817-21143975)
chr8 (80-213)||(358090-358231)
chr8 (80-203)||(21142598-21142729)
chr8 (65-141)||(37964438-37964514)
chr8 (65-141)||(27409956-27410032)
chr8 (63-145)||(27411028-27411110)
[»] chr6 (10 HSPs)
chr6 (16-213)||(843269-843467)
chr6 (10-213)||(12600009-12600219)
chr6 (63-213)||(19401910-19402068)
chr6 (80-213)||(842298-842439)
chr6 (63-213)||(7800027-7800185)
chr6 (63-213)||(19597766-19597924)
chr6 (63-213)||(11065441-11065600)
chr6 (127-213)||(20773294-20773388)
chr6 (155-213)||(7796863-7796921)
chr6 (155-213)||(30321053-30321111)
[»] chr3 (7 HSPs)
chr3 (16-213)||(24612389-24612587)
chr3 (63-213)||(31199360-31199518)
chr3 (80-213)||(24613418-24613559)
chr3 (80-213)||(33781299-33781440)
chr3 (65-141)||(27320486-27320562)
chr3 (63-142)||(27329015-27329094)
chr3 (168-213)||(31200848-31200893)
[»] chr5 (4 HSPs)
chr5 (10-213)||(13373879-13374090)
chr5 (16-208)||(9671077-9671277)
chr5 (82-208)||(13375144-13375261)
chr5 (88-213)||(9672162-9672295)
[»] scaffold0060 (2 HSPs)
scaffold0060 (16-213)||(12990-13195)
scaffold0060 (80-156)||(11956-12032)
[»] chr2 (15 HSPs)
chr2 (16-213)||(44819881-44820086)
chr2 (16-213)||(10344890-10345094)
chr2 (63-213)||(40128716-40128874)
chr2 (63-209)||(43516514-43516668)
chr2 (16-156)||(42930175-42930313)
chr2 (80-213)||(42929045-42929186)
chr2 (63-206)||(42827436-42827587)
chr2 (80-209)||(10344102-10344241)
chr2 (80-156)||(44820734-44820810)
chr2 (158-213)||(22054446-22054501)
chr2 (159-213)||(42931668-42931722)
chr2 (155-213)||(22060049-22060107)
chr2 (63-111)||(22059952-22060000)
chr2 (16-48)||(40128637-40128669)
chr2 (16-48)||(43516715-43516747)
[»] chr7 (5 HSPs)
chr7 (63-204)||(41591636-41591785)
chr7 (63-213)||(41385596-41385754)
chr7 (63-105)||(41593012-41593054)
chr7 (168-213)||(41593105-41593150)
chr7 (16-48)||(41591832-41591864)
[»] scaffold0129 (1 HSPs)
scaffold0129 (86-213)||(4069-4205)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 4907205 - 4907408
Alignment:
Q  10 tgagatgaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtat 109  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||       |||||||||||| ||||||||||||||||||||||||||||||||||    
T  4907205 tgagaggaagaagactgaaatttgagaggaagaagaagattaaccgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtat 4907304  T
Q  110 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4907305 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 4907404  T
Q  210 caag 213  Q
    ||||    
T  4907405 caag 4907408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 29756581 - 29756384
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||||||||||||||||||||||||| |||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29756581 gaagaagactgaaatttgagaggaagaagaagattaaccgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaac 29756482  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29756481 aacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 29756384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 4933074 - 4933277
Alignment:
Q  10 tgagatgaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtat 109  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||       |||||||||||| |||||||||||| |||||||||||||||||||||    
T  4933074 tgagaggaagaagactgaaatttgagaggaagaagaagattaaccgtttttttaatttcatccctgtgtcaatttacgattttgattttagtccctgtat 4933173  T
Q  110 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4933174 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 4933273  T
Q  210 caag 213  Q
    ||||    
T  4933274 caag 4933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 35785480 - 35785276
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||||||||||||||||||||||||   ||       |||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  35785480 gaagaagactgaaatttgagaggaagaagaagattgaacgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaaa 35785381  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    |||||||||||||||||||||||||||||||||||||        |||| ||||||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  35785380 aacttatcatctctcatgccatctcatcaaatgtgccaactcatgaactaccacgtgtgctccgttagccaccatgatgtttttgttgacagaagttgac 35785281  T
Q  208 ggcaa 212  Q
    |||||    
T  35785280 ggcaa 35785276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 7108194 - 7108401
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnn--aatttcatccctctgtcaatttacgtttttgattttagtccctgtatttta 113  Q
    |||||||| ||||||||||||||||||||||||||   ||         |||||||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  7108194 gaagaagactgaaatttgagaggaagaagaagattgaacgtttttttttaatttcatccctgtgtcaacgtacgttttttattttagtccctgtatttta 7108293  T
Q  114 acaacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctg 205  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  7108294 acaacttatcatctctcatgccatctcatcaaatgtgccaactcatgaactgccacgtgtgctccgttagccaccatgacatttttgttgacagaagctg 7108393  T
Q  206 acggcaag 213  Q
    ||||||||    
T  7108394 acggcaag 7108401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 55019158 - 55019304
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacg 162  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||    ||||    
T  55019158 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcattccatctcatcaactttgccaa----cacg 55019253  T
Q  163 tgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||| ||||| ||||||||||| |||||||||||| |||| ||||||||||    
T  55019254 tgtgctccgtaagccaccatggtgtttttgttgacggaagttgacggcaag 55019304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 4906382 - 4906241
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  4906382 aatttacgtttttgattttagtccctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcataacttgccacctgtgctccg 4906283  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  4906282 ttagccacagtggcgtttttgttgacagaagctaacggcaag 4906241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 4932251 - 4932110
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  4932251 aatttacgtttttgattttagtccctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcataacttgccacctgtgctccg 4932152  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  4932151 ttagccacagtggcgtttttgttgacagaagctaacggcaag 4932110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 29757413 - 29757554
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  29757413 aatttacgtttttgattttagtccctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcataacttgccacctgtgctccg 29757512  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  29757513 ttagccacagtggcgtttttgttgacagaagctaacggcaag 29757554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 38158419 - 38158512
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaact 156  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||    
T  38158419 aatttcatccttgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcattccatcgcatcaactttgccaact 38158512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 23703616 - 23703809
Alignment:
Q  10 tgagatgaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtat 109  Q
    ||||| |||||||| ||||||||||||||||||||||||||   ||       |||||||||||| ||||||||||||||||||||||||||            
T  23703616 tgagaggaagaagactgaaatttgagaggaagaagaagattgaacgtttttttaatttcatccctgtgtcaatttacgtttttgattttagt-------- 23703707  T
Q  110 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaact--------gccacgtgtgttccgttagccaccatggcgtttttgttgacagaa 201  Q
              |||||||||||||||||||||||||||||||||||||        |||||||||| ||||||| |||| |||||||||||||||||||||    
T  23703708 ----------tatcatctctcatgccatctcatcaaatgtgccaactcatgaactgccacgtgtgctccgttaaccactatggcgtttttgttgacagaa 23703797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 22674405 - 22674264
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||| |||| |||||||||||||| |||  |||||| ||||||||||||||||| |||||||||||||||||        |||||| |||| ||||    
T  22674405 aatttacgctttttattttagtccctgtctttacacaactaatcatctctcatgccatttcatcaaatgtgccaactcatgacttgccacctgtgctccg 22674306  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| || |||||    
T  22674305 ttagccacagtggcgtttttgttgacagaagctaacagcaag 22674264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 35786483 - 35786624
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    ||||||||||||| ||||||||| |||| |||  | || | |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  35786483 aatttacgttttttattttagtctctgtctttacataattaatcatctctcatgccatctcatcaaatgtgccaactcatgacttgccacctgtgctccg 35786582  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||| |||  ||||||||||||||||||||||  ||||||||    
T  35786583 ttaggcacagtggcgtttttgttgacagaagccaacggcaag 35786624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 23702653 - 23702579
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaact 156  Q
    |||||||||||||||||||||||||||| |||  |||||| ||||  |||||||||||||||||||||||| |||||    
T  23702653 aatttacgtttttgattttagtccctgtctttacacaactaatca--tctcatgccatctcatcaaatgtgtcaact 23702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 26734737 - 26734540
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||||||||||||||||||||||||| |||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26734737 gaagaagactgaaatttgagaggaagaagaagattaaccgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaac 26734638  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734637 aacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 26734540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 42300770 - 42300565
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| |||||||||||||||| ||||||||||  ||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42300770 gaagaagactgaaatttgagaggaaaaagaagattaaacgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaac 42300671  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    ||||||||||||||||| |||||||||||| | ||||        |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  42300670 aacttatcatctctcattccatctcatcaactttgccaactcatgaactgccacgtgtgctccgttagccaccatggcgtttttgttgacggaagctgac 42300571  T
Q  208 ggcaag 213  Q
    ||||||    
T  42300570 ggcaag 42300565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 52794021 - 52793816
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||||||||||||||||||||||||||||||   ||       |||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  52794021 gaagaagattgaaatttgagaggaagaagaagattgaacgtttttttaatttcatccttgtgtcaatttacgtttttgattttagtccctgtaatttaac 52793922  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    ||||||||||||||||| |||||||||||| | ||||        |||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||     
T  52793921 aacttatcatctctcattccatctcatcaactttgccaactcaggaactgccacgtgtgcttcgttaaccaccatgacgtttttgttgacggaagctgaa 52793822  T
Q  208 ggcaag 213  Q
    ||||||    
T  52793821 ggcaag 52793816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 42301423 - 42301557
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa--------ctgccacgtgtgttccg 171  Q
    |||||||| ||||||||||||||||||  |||  |||||| ||||||||||||||||||||||||||||||||||        ||||||| |||| ||||    
T  42301423 aatttacgcttttgattttagtccctgactttacacaactaatcatctctcatgccatctcatcaaatgtgccaagtcatgacctgccacctgtgctccg 42301522  T
Q  172 ttagccaccatggcgtttttgttgacagaagctga 206  Q
    |||||||| ||||||||||||||||||||||||||    
T  42301523 ttagccacaatggcgtttttgttgacagaagctga 42301557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 8322791 - 8322632
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaa-tgtgccaact----- 156  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||||||||    |||| |||||||| |||||||  |||||||| | ||||||||         
T  8322791 aatttcatccctgtggtaattttcgtttttgattttagtccctgtatttaccaaactaatcatctcgcatgccagatcatcaaaatatgccaactcattg 8322692  T
Q  157 ---gccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
       ||||| |||  |||||||||||| |||||||||||||| ||||||||||||||||||    
T  8322691 cccgccacctgtcctccgttagccacaatggcgtttttgttaacagaagctgacggcaag 8322632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 28253423 - 28253507
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaat 147  Q
    |||||||||||| ||| |||||||||||||||||||||||||| || |   || ||||||||||||||||||||||||| |||||    
T  28253423 aatttcatccctatgtaaatttacgtttttgattttagtccctctactaacactacttatcatctctcatgccatctcagcaaat 28253507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 9626715 - 9626583
Alignment:
Q  88 tttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa--------ctgccacgtgtgttccgttagccac 179  Q
    ||||| |||||| ||||| | |||  |||||| |||||||||||||||||||||||||||| |||||        || |||| |||| ||| ||||||||    
T  9626715 ttttttattttaatccctatctttacacaactaatcatctctcatgccatctcatcaaatgagccaactcacgacctaccacctgtgctccattagccac 9626616  T
Q  180 catggcgtttttgttgacagaagctgacggcaa 212  Q
     || |||||||||||||||||||||||||||||    
T  9626615 aatagcgtttttgttgacagaagctgacggcaa 9626583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 8323227 - 8323382
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaa-tgtgccaact----- 156  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||||||||    |||| ||||||||  ||||||  |||||||| | ||||||||         
T  8323227 aatttcatccctgtggtaattttcgtttttgattttagtccctgtatttaccaaactaatcatctcaaatgccagatcatcaaaatatgccaactcattg 8323326  T
Q  157 ---gccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 209  Q
       ||||| |||  |||||||||||| |||||||||||||| ||||||||||||||    
T  8323327 cctgccacttgtcctccgttagccacaatggcgtttttgttaacagaagctgacgg 8323382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 27524539 - 27524457
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaa 145  Q
    |||||||||||| ||| |||||  ||||||| |||||||||||||| |   || |||||||||||||||||||||||||||||    
T  27524539 aatttcatccctatgtaaatttgtgtttttggttttagtccctgtactaacactacttatcatctctcatgccatctcatcaa 27524457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 31810160 - 31810102
Alignment:
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||  |||||||||||| |||||||||||||| ||||||||||||||||||    
T  31810160 ctgccacctgtcctccgttagccacaatggcgtttttgttaacagaagctgacggcaag 31810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 31815659 - 31815717
Alignment:
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||  ||||||||||||  ||||||||||||| ||||||||||||||||||    
T  31815659 ctgccacctgtcctccgttagccacagtggcgtttttgttaacagaagctgacggcaag 31815717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 31815559 - 31815607
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattt 111  Q
    |||||||||||| ||  ||||  ||||||||||||||||||||||||||    
T  31815559 aatttcatccctgtggtaattgtcgtttttgattttagtccctgtattt 31815607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 359062 - 359260
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnn-aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaa 114  Q
    |||||||| | ||||||||||||||||||||||||| |||        |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  359062 gaagaagactaaaatttgagaggaagaagaagattaaccgttttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaa 359161  T
Q  115 caacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  359162 caacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 21143817 - 21143975
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgcc--------aa 154  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||    
T  21143817 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcattaaatgtgccaactcataaa 21143916  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  21143917 ctgccacgtgtgctccgttagccaccatgacgtttttgttgacagaagctgacgacaag 21143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 358231 - 358090
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    ||||||||||||||||||||||| |||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  358231 aatttacgtttttgattttagtctctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcataacttgccacctgtgctccg 358132  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  358131 ttagccacagtggcgtttttgttgacagaagctgacggcaag 358090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 21142729 - 21142598
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    ||||||||||||| |||| ||||| ||| |||  |||||| |||||||||||||||||||||||||||||| ||||        |||||| |||| ||||    
T  21142729 aatttacgttttttatttaagtccatgtctttacacaactaatcatctctcatgccatctcatcaaatgtgtcaactcatgacttgccacctgtgctccg 21142630  T
Q  172 ttagccaccatggcgtttttgttgacagaagc 203  Q
    |||||||| ||| |||||||||||||||||||    
T  21142629 ttagccacaatgacgtttttgttgacagaagc 21142598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 37964438 - 37964514
Alignment:
Q  65 tttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctca 141  Q
    |||||||||| ||| ||||| |||||||| ||||||||||||||||   || |||||| ||||||||||||| ||||    
T  37964438 tttcatccctatgtaaattttcgtttttggttttagtccctgtattaacactacttatgatctctcatgccacctca 37964514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 27410032 - 27409956
Alignment:
Q  65 tttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctca 141  Q
    |||||||||| ||| ||||| |||||||| ||| ||||||||||||   || |||||| ||||||||||||| ||||    
T  27410032 tttcatccctatgtaaattttcgtttttggtttaagtccctgtattaacactacttatgatctctcatgccacctca 27409956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 27411028 - 27411110
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaa 145  Q
    |||||||||||| ||| |||||  ||||||  ||||||||| ||||||   || ||||||||||||||||||||  |||||||    
T  27411028 aatttcatccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctctcatgccacttcatcaa 27411110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 843269 - 843467
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnn-aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaa 114  Q
    |||||||| |||||||||||||||||||||||| || |||        |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  843269 gaagaagactgaaatttgagaggaagaagaagactaaccgttttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaa 843368  T
Q  115 caacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  843369 caacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtatgatccgttagccaccatggcgtttttgttgacagaagctgacggcaag 843467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 12600219 - 12600009
Alignment:
Q  10 tgagatgaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtat 109  Q
    ||||| |||||||| |||||||| ||||||||||||||||||  ||       |||||||||| | |||||||||||||||||||||||||||| ||||     
T  12600219 tgagaggaagaagaatgaaatttaagaggaagaagaagattaaacgtttttttaatttcatccatgtgtcaatttacgtttttgattttagtccatgta- 12600121  T
Q  110 tttaacaacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaa 201  Q
    ||||||||||||||||||||||| |||||||||||| | ||||        |||||||| ||||| |||||||| |||| ||| ||||||||||||  ||    
T  12600120 tttaacaacttatcatctctcattccatctcatcaactttgccaactcatgaactgccatgtgtgctccgttagtcaccgtggtgtttttgttgacgaaa 12600021  T
Q  202 gctgacggcaag 213  Q
    | ||||||||||    
T  12600020 gttgacggcaag 12600009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 19401910 - 19402068
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||| ||||||            
T  19401910 aatttcatccctgtgataatttacgtttttgattttagtccctgtatttacacaactaatcatctcacatgccatctcatcaaatatgccaactcattgc 19402009  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||| |||||||||||| ||||| |||||||||||| ||||||||||||||    
T  19402010 ctgccacctgtgctccgttagccacaatggcatttttgttgacataagctgacggcaag 19402068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 842439 - 842298
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||||||| |||  |||||| ||||||||| |||||||||||||||||||||||||        |||||| |||| ||||    
T  842439 aatttacgtttttgattttagtccctgtctttacacaactaatcatctcttatgccatctcatcaaatgtgccaactcataacttgccacctgtgctccg 842340  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  842339 ttagccacagtggcgtttttgttgacagaagctaacggcaag 842298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 7800027 - 7800185
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    ||||| |||||| ||  ||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||| |||||||||| ||||||            
T  7800027 aattttatccctgtggtaatttacgtttttgattttagtccctgtatttatacaactaatcatctcgcatgccacctcatcaaatatgccaactcattgt 7800126  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||| |||||||||||| |||||||||||||| ||| ||||||| ||||||    
T  7800127 ctgccacctgtgctccgttagccacaatggcgtttttgttaacataagctgatggcaag 7800185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 19597766 - 19597924
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaact------ 156  Q
    |||||||||||| |||| || || |||||| ||| ||||||||||| | |  ||||||||||||||||||| ||||||||||| | | ||||||          
T  19597766 aatttcatccctgtgtcgatatatgttttttattctagtccctgtactctcccaacttatcatctctcatgtcatctcatcaatttttccaactcatgat 19597865  T
Q  157 --gccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
      |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  19597866 ctgccacgtgtgctccgttagccaccatggcgtttttgttgacggaagctgacggcaag 19597924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 11065441 - 11065600
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaa-tgtgccaact----- 156  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||||||||    |||| |||||||| |||||||  |||||||| | ||||||||         
T  11065441 aatttcatccctgtggtaattttcgtttttgattttagtccctgtatttaccaaactaatcatctcacatgccagatcatcaaaatatgccaactcattg 11065540  T
Q  157 ---gccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
       ||||| |||  |||||||||||| |||||||||||||| ||||||||||||||||||    
T  11065541 cctgccacctgtcctccgttagccacaatggcgtttttgttaacagaagctgacggcaag 11065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 20773294 - 20773388
Alignment:
Q  127 tctcatgccatctcatcaaatgtgccaact--------gccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||||||||||||||||||        ||||| |||| ||| |||||||| ||||| |||||||||||||||| ||||||||||    
T  20773294 tctcatgccatctcatcaaatgtgccaactcatgacctgccacctgtgctccattagccacaatggcatttttgttgacagaaggtgacggcaag 20773388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 7796921 - 7796863
Alignment:
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||| || ||||||||| |||||||||||||| |||||||||||| |||||    
T  7796921 ctgccacctgtgctctgttagccacaatggcgtttttgttaacagaagctgacagcaag 7796863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 30321053 - 30321111
Alignment:
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||  |||||||||||| |||| ||||||||| ||||||||||||||||||    
T  30321053 ctgccacctgtcctccgttagccacaatggtgtttttgttaacagaagctgacggcaag 30321111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 24612587 - 24612389
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnn-aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaa 114  Q
    |||||||| ||||||||||||||||| ||||||||| |||        |||||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  24612587 gaagaagactgaaatttgagaggaaggagaagattaaccgttttttttaatttcgtccctgtgtcaatttacgtttttgattttagtccctatattttaa 24612488  T
Q  115 caacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24612487 caacttatcatctctcatgccatctcatcaaatgtgccaactgccatgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 24612389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 31199518 - 31199360
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| | ||||||            
T  31199518 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtattctaacaacttatcatctcttattccatctcatcaactttgccaactcatgat 31199419  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||    
T  31199418 ctgccacgtgtgctccgttagccagcatggcgtttttgttgacggaatctgacggcaag 31199360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 24613418 - 24613559
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||| ||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  24613418 aatttacgtttttgattttagtccttgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcataacttgccacttgtgctccg 24613517  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  24613518 ttagccacagtggcgtttttgttgacagaagctaacggcaag 24613559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 33781299 - 33781440
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    ||||||||||||| ||||||||| |||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| |||| ||||    
T  33781299 aatttacgttttttattttagtctctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcatgacttgccacatgtgctccg 33781398  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  33781399 ttagccacaatggcgtttttgttgacagaagctaacggcaag 33781440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 27320486 - 27320562
Alignment:
Q  65 tttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctca 141  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||   || |||||| ||||||||||||| ||||    
T  27320486 tttcatccctatgtaaattttcgtttttgattttagtccctgtattaacactacttatgatctctcatgccacctca 27320562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 27329094 - 27329015
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcat 142  Q
    |||||||||||| ||| |||||  ||||||| ||||||||| ||||||   || |||||||||||||||||||| |||||    
T  27329094 aatttcatccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctctcatgccacctcat 27329015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 31200848 - 31200893
Alignment:
Q  168 tccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||  | |||||||||||| |||||||||||||||    
T  31200848 tccgttagccaccagagtgtttttgttgacggaagctgacggcaag 31200893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 13374090 - 13373879
Alignment:
Q  10 tgagatgaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtat 109  Q
    ||||| |||||||| ||||||||||||||||||||||||||   ||       |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13374090 tgagaggaagaagactgaaatttgagaggaagaagaagattgaacgtttttttaatttcatccctgtgtcaatttacgttttttattttagtccctgtat 13373991  T
Q  110 tttaacaacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||  || |||||||||||||||||||||||||||||||    
T  13373990 tttaacaacttatcatctctcatgccatctcatcaaatgtgccaactcatgaactgccacgtgtactcggttagccaccatggcgtttttgttgacagaa 13373891  T
Q  202 gctgacggcaag 213  Q
    ||||||||||||    
T  13373890 gctgacggcaag 13373879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 9671277 - 9671077
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||| ||||||||||||||||||||   ||       |||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9671277 gaagaagactgaaacttgagaggaagaagaagattgaacgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccttgtattttaac 9671178  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||  |||||||||| ||||    
T  9671177 aacttatcatctctcatgccatctcatcaaatgtgccaactcatgaactgccacgtgtgctccgttagccaccatggcgttttacttgacagaagttgac 9671078  T
Q  208 g 208  Q
    |    
T  9671077 g 9671077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 13375144 - 13375261
Alignment:
Q  82 tttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaactgccacgtgtgttccgttagccacca 181  Q
    ||||||||||| |||||||||||||| |||  |||||| |||||||||||||||| ||||| |          ||||||| |||| |||||||||||| |    
T  13375144 tttacgttttttattttagtccctgtctttacacaactaatcatctctcatgccaactcatgac---------ctgccacatgtgctccgttagccacaa 13375234  T
Q  182 tggcgtttttgttgacagaagctgacg 208  Q
    |||||||||||||||||||||||||||    
T  13375235 tggcgtttttgttgacagaagctgacg 13375261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 9672162 - 9672295
Alignment:
Q  88 tttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccgttagccac 179  Q
    |||||||||||||||| ||| |||  |||||| |||||||||||||||||||| ||||||||||||||        |||||| |||| |||||||||||     
T  9672162 tttttgattttagtccatgtctttacacaactaatcatctctcatgccatctcgtcaaatgtgccaactcatgacttgccacctgtgctccgttagccaa 9672261  T
Q  180 catggcgtttttgttgacagaagctgacggcaag 213  Q
      ||||||||||||||||| ||||| || |||||    
T  9672262 agtggcgtttttgttgacataagctaactgcaag 9672295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 12990 - 13195
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||||||||||||||||||||||||   ||       |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  12990 gaagaagactgaaatttgagaggaagaagaagattgaacgtttttttaatttcatccctgtgtcaatttacgtttttgattttagtccctatattttaac 13089  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgcc--------aactgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    |||||||||||||||||||||||||| ||||||||||        ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  13090 aacttatcatctctcatgccatctcaccaaatgtgccaactcatgaactgccacctgtgctccgttagccaccatggcgtttttgttgacagaagctgac 13189  T
Q  208 ggcaag 213  Q
    ||||||    
T  13190 ggcaag 13195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 12032 - 11956
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaact 156  Q
    |||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||    
T  12032 aatttacgtttttgattttagtccctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaact 11956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 44820086 - 44819881
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| |||||||||||||||||||||||||||  ||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44820086 gaagaagactgaaatttgagaggaagaagaagattaaacgttttcttaatttcatccctgtgtcaatttacgtttttgattttagtccctgtattttaac 44819987  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    ||||||||||||||||| |||||||||||| | || ||||        ||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  44819986 aacttatcatctctcattccatctcatcaactttgtcaactcatgaaatgccatgtgtgctccgttagccaccatggcgtttttgttgactgaagctgac 44819887  T
Q  208 ggcaag 213  Q
    ||||||    
T  44819886 ggcaag 44819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 10344890 - 10345094
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| |||||||||||||||||| ||||||||  ||       |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  10344890 gaagaagactgaaatttgagaggaagaggaagattaaacgtttttttaatttcatccctgtgtcaatttacgttttttattttagtcc-tgtattttaac 10344988  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgccaa--------ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgac 207  Q
    ||||||||||||||||| |||||||||||| | ||||||        |||||||||||| |||||||||||||||| | ||||||||||| |||||||||    
T  10344989 aacttatcatctctcattccatctcatcaactttgccaactcatgagctgccacgtgtgctccgttagccaccatgacatttttgttgacggaagctgac 10345088  T
Q  208 ggcaag 213  Q
    ||||||    
T  10345089 ggcaag 10345094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 40128716 - 40128874
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| | ||||||            
T  40128716 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtgttttaacaacttatcatctcttattccatctcatcaactttgccaactcatgac 40128815  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||||| ||||||||||| ||| ||||||| |||||| |||||| ||||||||    
T  40128816 ctgccacgtgtgctccgttagccagcattgcgttttcgttgacggaagctaacggcaag 40128874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 43516668 - 43516514
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||| | ||||||            
T  43516668 aatttcatccctgtgtcaatttacgttttttattttagtccctgtattctaacaacttatcatctcttattccatctcatcaactttgccaactcatgac 43516569  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacgg 209  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||    
T  43516568 ctgccacgtgtgctccgttagccagcattgcgtttttgttgacggaagctgacgg 43516514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 42930175 - 42930313
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaagattagccgnnnnnnnaatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaac 115  Q
    |||||||| ||||||||||||||||||||||||||   ||       |||||||||||| ||||||||||||||||| |||||||||||   ||||||||    
T  42930175 gaagaagactgaaatttgagaggaagaagaagattgaacgtttttctaatttcatccctgtgtcaatttacgttttttattttagtccca--attttaac 42930272  T
Q  116 aacttatcatctctcatgccatctcatcaaatgtgccaact 156  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  42930273 aagttatcatctctcatgccatctcatcaaatgtgccaact 42930313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 42929186 - 42929045
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaac--------tgccacgtgtgttccg 171  Q
    |||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||        |||||| | || ||||    
T  42929186 aatttacgtttttgattttagtccctgtctttacacaactaatcatctctcatgccatctcatcaaatgtgccaactcatgacttgccacctttgctccg 42929087  T
Q  172 ttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||||||||||| ||||||||||||||| |||||    
T  42929086 ttagccatcatggcgttttttttgacagaagctgacagcaag 42929045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 42827587 - 42827436
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||| ||||| |||||||||| |||||| ||||||||||||||| | |  |||||||||||||||||| |||||||||||| | | ||||            
T  42827587 aatttcttccctgtgtcaatttatgttttttattttagtccctgtactcttgcaacttatcatctctcataccatctcatcaatttttccaactcatgac 42827488  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctga 206  Q
    |||||||||||| || |||||||||||| |||||||||||||| ||||||||    
T  42827487 ctgccacgtgtgctctgttagccaccatagcgtttttgttgacggaagctga 42827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 10344241 - 10344102
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa--------ctgccacgtgtgttccg 171  Q
    ||||||||||||||||||||||| |||| |||  |||||| || |||||||||| ||||||||||||||||||||        ||||||| |||| ||||    
T  10344241 aatttacgtttttgattttagtctctgtctttacacaactaataatctctcatgtcatctcatcaaatgtgccaactcatgacctgccacctgtgctccg 10344142  T
Q  172 ttagccaccatgg--cgtttttgttgacagaagctgacgg 209  Q
    |||||||| ||||  | |||||||||||| ||||||||||    
T  10344141 ttagccacaatggatcatttttgttgacaaaagctgacgg 10344102  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 44820734 - 44820810
Alignment:
Q  80 aatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaact 156  Q
    |||||| |||||| ||||||||||| || |||  |||||| ||||||||||||||||||||||||||||||||||||    
T  44820734 aatttatgttttttattttagtccccgtctttgcacaactaatcatctctcatgccatctcatcaaatgtgccaact 44820810  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 22054501 - 22054446
Alignment:
Q  158 ccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||    
T  22054501 ccacctgtgctccgttagccacaatggcgtttttgttaacagaagctgacggcaag 22054446  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 42931668 - 42931722
Alignment:
Q  159 cacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||    
T  42931668 cacgtgtgctctcttagccaccatggcgtttttgttgacagaagctgacgacaag 42931722  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 22060049 - 22060107
Alignment:
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||| |||| | |||||||||| || ||||||||||| ||||||||||||||||||    
T  22060049 ctgccacctgtgcttcgttagccacaattgcgtttttgttaacagaagctgacggcaag 22060107  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 22059952 - 22060000
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattt 111  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  22059952 aatttcatccctgtggtaatttacatttttgattttagtccctgtattt 22060000  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 40128637 - 40128669
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaaga 48  Q
    |||||||| ||||||||||||||||||||||||    
T  40128637 gaagaagactgaaatttgagaggaagaagaaga 40128669  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 43516747 - 43516715
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaaga 48  Q
    |||||||| ||||||||||||||||||||||||    
T  43516747 gaagaagactgaaatttgagaggaagaagaaga 43516715  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 41591785 - 41591636
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||||||| | ||||||            
T  41591785 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtgttctaacaacttatcatctcttattccatctcatcaactttgccaactcatgat 41591686  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagct 204  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| ||||||    
T  41591685 ctgccacgtgtgctccgttagccagcattgcgtttttgttgacggaagct 41591636  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 41385596 - 41385754
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaatgtgccaa-------- 154  Q
    |||||||||||| |||||||||| |||||| ||||||||||  ||| | | ||||||||||||||||||||  |||||||||| | | ||||            
T  41385596 aatttcatccctgtgtcaatttatgttttttattttagtcctagtactctcacaacttatcatctctcatgttatctcatcaatttttccaactcatgac 41385695  T
Q  155 ctgccacgtgtgttccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    |||||||||| | |||||||||||||||| | ||||||||||| |||||||||||||||    
T  41385696 ctgccacgtgggctccgttagccaccatgacatttttgttgacggaagctgacggcaag 41385754  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 41593012 - 41593054
Alignment:
Q  63 aatttcatccctctgtcaatttacgtttttgattttagtccct 105  Q
    |||||||||||| ||||||||| |||||||| |||||||||||    
T  41593012 aatttcatccctatgtcaattttcgtttttggttttagtccct 41593054  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 41593105 - 41593150
Alignment:
Q  168 tccgttagccaccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||||||||||||||  |||||||| ||||| |||||||||||||||    
T  41593105 tccgttagccaccaaagcgtttttattgacggaagctgacggcaag 41593150  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 41591864 - 41591832
Alignment:
Q  16 gaagaagattgaaatttgagaggaagaagaaga 48  Q
    |||||||| ||||||||||||||||||||||||    
T  41591864 gaagaagactgaaatttgagaggaagaagaaga 41591832  T

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Target: scaffold0129 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 4069 - 4205
Alignment:
Q  86 cgtttttgattttagtccctgtattttaacaacttatcatctctcatgccatctcatcaaa-tgtgccaact--------gccacgtgtgttccgttagc 176  Q
    ||||||||||||||||||||||||||    |||| |||||||| |||||||  |||||||| | || |||||        ||||| |||  |||||||||    
T  4069 cgtttttgattttagtccctgtatttaccaaactaatcatctcgcatgccagatcatcaaaatatgacaactcattgcctgccacctgtcctccgttagc 4168  T
Q  177 caccatggcgtttttgttgacagaagctgacggcaag 213  Q
    ||| |||||||||||||| ||||||||||||||||||    
T  4169 cacaatggcgtttttgttaacagaagctgacggcaag 4205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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