View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_28 (Length: 219)
Name: NF14254_low_28
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5687218 - 5687035
Alignment:
| Q |
20 |
atctggtcctaccatttctaagaata--tttatcttatctatttattgtgatcctgtctctcactctctctaatagtttgtccttttgaacaaacactaa |
117 |
Q |
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| T |
5687218 |
atctggtcctaccatttccaagaatacatttatcttatctatttattgtgatcctgtctctcactctctctaatagtttgtccttttgaaaaaacactaa |
5687119 |
T |
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| Q |
118 |
aataaactaatcaatataagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttcttac |
201 |
Q |
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| T |
5687118 |
aataaactaatcaatataagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttcttac |
5687035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 5699441 - 5699240
Alignment:
| Q |
19 |
tatctggtcctaccat---ttctaagaatatttatcttatctat----ttattgtgatcctgtctctcactctctctaata----------gtttgtcct |
101 |
Q |
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|||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
5699441 |
tatctggtcctaccatgatttctaataatatttatcctatctatctatttattgtgatcctatctctcactctctcaaataatctccaatagtttgtcct |
5699342 |
T |
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| Q |
102 |
tttg----aacaaacactaaaataaactaatcaatataagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttc |
197 |
Q |
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| T |
5699341 |
ttaggacaaacaaacactag--taaattaattaacgtaagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttc |
5699244 |
T |
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| Q |
198 |
ttac |
201 |
Q |
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|||| |
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| T |
5699243 |
ttac |
5699240 |
T |
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