View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_3 (Length: 520)
Name: NF14254_low_3
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_3 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 12098 - 11614
Alignment:
| Q |
15 |
cacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
12098 |
cacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaa |
11999 |
T |
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| Q |
115 |
acacaaaacctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaat |
214 |
Q |
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| T |
11998 |
acacaaaccccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaat |
11899 |
T |
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| Q |
215 |
taagaagaagaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtat |
314 |
Q |
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| T |
11898 |
taagaagaagaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtat |
11799 |
T |
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| Q |
315 |
gtgtaactgttatgggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaa |
414 |
Q |
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| T |
11798 |
gtgtaagtgttatgggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaa |
11699 |
T |
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| Q |
415 |
aactaaaattagaaataaattgt-aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacctct |
498 |
Q |
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| T |
11698 |
aactaaaattagaaataaattttaaaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatgtgtgtacctct |
11614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 19835 - 19351
Alignment:
| Q |
15 |
cacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
19835 |
cacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaa |
19736 |
T |
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| Q |
115 |
acacaaaacctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaat |
214 |
Q |
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| T |
19735 |
acacaaaccccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaat |
19636 |
T |
|
| Q |
215 |
taagaagaagaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtat |
314 |
Q |
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| T |
19635 |
taagaagaagaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtat |
19536 |
T |
|
| Q |
315 |
gtgtaactgttatgggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaa |
414 |
Q |
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| T |
19535 |
gtgtaagtgttatgggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaa |
19436 |
T |
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| Q |
415 |
aactaaaattagaaataaattgt-aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacctct |
498 |
Q |
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| T |
19435 |
aactaaaattagaaataaattttaaaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatgtgtgtacctct |
19351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 27534 - 27269
Alignment:
| Q |
15 |
cacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaa |
114 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27534 |
cacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctctacttgataagcagaagttgcaactccaa |
27435 |
T |
|
| Q |
115 |
acacaaaacctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaat |
214 |
Q |
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| T |
27434 |
acacaaaccccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaactccattaactgaactaacaagaacaac |
27335 |
T |
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| Q |
215 |
taagaagaagaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaa |
280 |
Q |
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| T |
27334 |
taagaagaagaaaaacatggaatagaaacattgatgctgttgtgaatccaacatcatcatcttcaa |
27269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 331 - 496
Target Start/End: Complemental strand, 27233 - 27069
Alignment:
| Q |
331 |
agataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattagaaat |
430 |
Q |
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||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||| |
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| T |
27233 |
agataatgtttcattgattaccacatgagtgagtttggttttataggacatgtttgaagaaaatttctattttgcccatc-aaaagctaaaattagaaat |
27135 |
T |
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| Q |
431 |
aaattgtaaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacct |
496 |
Q |
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| T |
27134 |
aaattgtaaatgtacatttggcaatgtgtcataatcatgggacccttacatggcatgcgtgtacct |
27069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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