View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14254_low_30 (Length: 209)

Name: NF14254_low_30
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14254_low_30
NF14254_low_30
[»] chr4 (2 HSPs)
chr4 (17-183)||(39391560-39391730)
chr4 (94-136)||(39410553-39410595)
[»] chr1 (2 HSPs)
chr1 (94-173)||(5505729-5505808)
chr1 (95-135)||(41060864-41060904)
[»] chr8 (1 HSPs)
chr8 (98-174)||(9488809-9488885)
[»] chr7 (2 HSPs)
chr7 (96-136)||(29898430-29898470)
chr7 (98-162)||(31720954-31721018)
[»] chr2 (1 HSPs)
chr2 (94-134)||(6811451-6811491)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 39391730 - 39391560
Alignment:
Q  17 catgtatacatatgcagatttaacaaacattcataaaccaacataaacatatataattatatcnnnnnnn----tcattatatatgtgtttagtttccta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||  ||    
T  39391730 catgtatacatatgcagatttaacaaacattcataaaccaacataaacatatataattatataaaaaaaaaaaatcattatatatgtgtttagtttttta 39391631  T
Q  113 atgatatacatttcaactaatctttgttgaggcttatgctaccccaatcatcgctttcaagatctatgtta 183  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  39391630 atgatatacatttcaactgatctttgtcgaggtttatgctaccccaatcatcgctttcaagatctatgtta 39391560  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 39410553 - 39410595
Alignment:
Q  94 atatgtgtttagtttcctaatgatatacatttcaactaatctt 136  Q
    |||||| |||||||||||||||||| ||||||||||| |||||    
T  39410553 atatgtatttagtttcctaatgatagacatttcaactcatctt 39410595  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 5505808 - 5505729
Alignment:
Q  94 atatgtgtttagtttcctaatgatatacatttcaactaatctttgttgaggcttatgctaccccaatcatcgctttcaag 173  Q
    |||||||||||||| ||||||||||| || || |||||||||||| |||||  |||||||||||||| ||| ||||||||    
T  5505808 atatgtgtttagttccctaatgatattcagtttaactaatctttggtgaggtctatgctaccccaattatcactttcaag 5505729  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 41060864 - 41060904
Alignment:
Q  95 tatgtgtttagtttcctaatgatatacatttcaactaatct 135  Q
    ||||||||||||| | ||||||||||||||| |||||||||    
T  41060864 tatgtgtttagttccttaatgatatacatttgaactaatct 41060904  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 9488809 - 9488885
Alignment:
Q  98 gtgtttagtttcctaatgatatacatttcaactaatctttgttgaggcttatgctaccccaatcatcgctttcaaga 174  Q
    |||||||||| | ||||||||||||||| |||||||||| |   |||  |||| |||||||| |||| |||||||||    
T  9488809 gtgtttagttccttaatgatatacatttgaactaatcttaggcaaggtctatgttaccccaagcatcactttcaaga 9488885  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 29898430 - 29898470
Alignment:
Q  96 atgtgtttagtttcctaatgatatacatttcaactaatctt 136  Q
    |||||||||||| |||||||||||||||||  |||||||||    
T  29898430 atgtgtttagttccctaatgatatacatttggactaatctt 29898470  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 31720954 - 31721018
Alignment:
Q  98 gtgtttagtttcctaatgatatacatttcaactaatctttgttgaggcttatgctaccccaatca 162  Q
    |||||||||| |||||| |||||||||||||| |||||| |  ||||  |||||||||| |||||    
T  31720954 gtgtttagttccctaataatatacatttcaaccaatcttgggagaggtctatgctacccgaatca 31721018  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 6811451 - 6811491
Alignment:
Q  94 atatgtgtttagtttcctaatgatatacatttcaactaatc 134  Q
    |||||||||||||||| ||||||||||||||| || |||||    
T  6811451 atatgtgtttagtttcttaatgatatacatttgaattaatc 6811491  T

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