View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14254_low_6 (Length: 471)
Name: NF14254_low_6
Description: NF14254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14254_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 55103684 - 55103226
Alignment:
| Q |
1 |
ctttttccaatagtatctctgttgtcacagaaccaactcgttccttatcagaatgcaataattcattgttgtagtaatctatcccccagaaaagagctac |
100 |
Q |
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| T |
55103684 |
ctttttccaatagtatctctgttgtcacagaaccaactcggtccttatcagaatgcaataattcattgttgtagtaatctatcccccagaaaagagctac |
55103585 |
T |
|
| Q |
101 |
tccatctgcctcaaattaaatattctcttaatcactatatataaaatactaccagtactatttgatcaattaatttattcaatagtttaaacagactaca |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||| |
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| T |
55103584 |
tccatctgcctcaaattaaataatctcttaatcactatatataaaatactaccagtactattttatcaatcaatttattcaatattttaaacagactaca |
55103485 |
T |
|
| Q |
201 |
tacatcaaaaatatcattgaatggaatgtaagaaattaccttggatcccaagagtcgaaagtttagtgctattgaagctgtaagttgttgccttttggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55103484 |
tacatcaaaaatatcattgaatggaatgtaagaaattaccttggatcccaagagtcgaaagtttagtgctattgaagctgtaagttgttgccttttggtt |
55103385 |
T |
|
| Q |
301 |
aaaaccaggatgttgaacgagcacgttccagttagagtagtttctattgaagttgtagttagaaattgtaagcttgaccctccattgattcatataattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55103384 |
aaaaccaggatgttgaacgagcacgttccagttagagtagtttctattgaagttgtagttagaaattgtaagcttgatcctccattgattcatataattg |
55103285 |
T |
|
| Q |
401 |
ttcttgaaatgccaatggactcgaattggacacatgtggtcggtacattcaattatatt |
459 |
Q |
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| T |
55103284 |
ttcttgaaatgccaatggactcgaattggacacatgtggtcagtacattcaattatatt |
55103226 |
T |
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