View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14255_high_4 (Length: 280)
Name: NF14255_high_4
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 19598172 - 19598315
Alignment:
| Q |
17 |
cttaatttggttatgtagttttatattatttatttattgatgaataaagagtttagctagttatatatttggtactgaattatgcaaaggatggtgtcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19598172 |
cttaatttggttatgtagttttatattatttatttattgatgaataaagagtttagctagttatatatt--gtactgaattatgcaaaggatggtatcaa |
19598269 |
T |
|
| Q |
117 |
caaggag--------atctccatgtttcctcgggcacaaagtgttt |
154 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
19598270 |
caaggagtatttgacatctccatgtttccttgggcacaaagtgttt |
19598315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 19598471 - 19598588
Alignment:
| Q |
153 |
tttgcttggagtctttcacatttccaggtaatttgctcggatacatagcgccgacttggagtgtttgacatctcaatgcccgggcacaaagttctggata |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19598471 |
tttgcttggagtctttcacatttccaggt---ttgctcggatacatagtgccggcttggagtgtttgacatctcaatgcccgggaacaaagttctggata |
19598567 |
T |
|
| Q |
253 |
agagtctttcacatgcctatg |
273 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
19598568 |
agagtctttcacatgtctatg |
19598588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University