View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14255_high_5 (Length: 264)

Name: NF14255_high_5
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14255_high_5
NF14255_high_5
[»] chr7 (19 HSPs)
chr7 (1-253)||(38679896-38680147)
chr7 (50-218)||(33187778-33187944)
chr7 (49-251)||(1277887-1278089)
chr7 (86-218)||(12624340-12624472)
chr7 (115-226)||(42112956-42113065)
chr7 (108-226)||(7391400-7391515)
chr7 (164-223)||(30301968-30302027)
chr7 (86-228)||(42266973-42267115)
chr7 (49-226)||(4787933-4788108)
chr7 (180-251)||(22556761-22556831)
chr7 (91-219)||(13697263-13697390)
chr7 (166-219)||(46611873-46611927)
chr7 (144-228)||(30081350-30081435)
chr7 (164-221)||(31180011-31180067)
chr7 (164-244)||(17884238-17884318)
chr7 (86-135)||(23772505-23772556)
chr7 (164-216)||(31055359-31055411)
chr7 (195-223)||(38987373-38987401)
chr7 (198-226)||(46303244-46303272)
[»] chr8 (17 HSPs)
chr8 (49-221)||(27085328-27085499)
chr8 (86-221)||(1839786-1839922)
chr8 (49-226)||(13406402-13406578)
chr8 (165-227)||(5911471-5911533)
chr8 (164-226)||(28416205-28416267)
chr8 (89-248)||(39193882-39194043)
chr8 (164-226)||(41455231-41455293)
chr8 (115-190)||(31297345-31297418)
chr8 (86-186)||(36906202-36906302)
chr8 (86-189)||(1942019-1942122)
chr8 (164-242)||(5858308-5858387)
chr8 (86-236)||(21173824-21173975)
chr8 (86-137)||(16424200-16424253)
chr8 (86-136)||(32216-32268)
chr8 (86-190)||(34272525-34272630)
chr8 (90-136)||(39778867-39778915)
chr8 (86-135)||(41455323-41455374)
[»] chr3 (17 HSPs)
chr3 (86-226)||(53888461-53888602)
chr3 (86-226)||(35283061-35283202)
chr3 (49-221)||(27681787-27681954)
chr3 (108-221)||(48444486-48444596)
chr3 (164-251)||(50345691-50345777)
chr3 (86-226)||(32858804-32858945)
chr3 (144-251)||(2927802-2927909)
chr3 (49-144)||(19148222-19148318)
chr3 (110-251)||(27921913-27922050)
chr3 (110-190)||(51686517-51686595)
chr3 (110-236)||(33944632-33944757)
chr3 (164-221)||(3458330-3458387)
chr3 (51-183)||(46891404-46891535)
chr3 (195-251)||(54090274-54090330)
chr3 (108-144)||(3333919-3333955)
chr3 (86-190)||(47714639-47714743)
chr3 (86-186)||(47789412-47789512)
[»] chr5 (7 HSPs)
chr5 (51-249)||(6491135-6491333)
chr5 (49-215)||(6373123-6373289)
chr5 (49-155)||(1935037-1935142)
chr5 (164-221)||(29022598-29022655)
chr5 (108-234)||(39428908-39429032)
chr5 (164-221)||(29799626-29799683)
chr5 (164-236)||(43496905-43496977)
[»] chr2 (21 HSPs)
chr2 (86-227)||(11522146-11522288)
chr2 (49-217)||(9087395-9087562)
chr2 (88-227)||(31584734-31584873)
chr2 (86-236)||(43572510-43572661)
chr2 (143-225)||(11949881-11949962)
chr2 (110-218)||(567369-567475)
chr2 (193-253)||(27987613-27987672)
chr2 (193-253)||(28074146-28074205)
chr2 (86-217)||(44656716-44656846)
chr2 (115-216)||(34757589-34757690)
chr2 (86-226)||(11515018-11515159)
chr2 (110-190)||(28539418-28539496)
chr2 (86-190)||(13765905-13766009)
chr2 (49-217)||(9087628-9087795)
chr2 (175-221)||(39181057-39181103)
chr2 (164-236)||(15555390-15555463)
chr2 (86-226)||(37194241-37194382)
chr2 (86-186)||(18826192-18826292)
chr2 (86-151)||(32761252-32761319)
chr2 (86-186)||(36567244-36567344)
chr2 (86-186)||(40357472-40357572)
[»] chr4 (12 HSPs)
chr4 (86-222)||(42650614-42650751)
chr4 (51-221)||(46669877-46670047)
chr4 (89-221)||(9119756-9119887)
chr4 (164-251)||(47063642-47063729)
chr4 (164-226)||(55813670-55813732)
chr4 (86-226)||(12708800-12708941)
chr4 (49-149)||(48620339-48620440)
chr4 (176-223)||(29576191-29576238)
chr4 (86-136)||(3075732-3075782)
chr4 (198-252)||(23902509-23902562)
chr4 (86-186)||(7182157-7182257)
chr4 (86-135)||(40423039-40423090)
[»] chr1 (19 HSPs)
chr1 (167-251)||(34552134-34552218)
chr1 (86-219)||(41432728-41432865)
chr1 (144-226)||(12625848-12625930)
chr1 (144-251)||(17556616-17556724)
chr1 (108-217)||(25561308-25561414)
chr1 (86-221)||(42806151-42806285)
chr1 (164-226)||(50097602-50097664)
chr1 (86-226)||(5584479-5584620)
chr1 (115-226)||(36269717-36269827)
chr1 (86-144)||(43036289-43036349)
chr1 (164-251)||(49102996-49103084)
chr1 (115-190)||(1688214-1688287)
chr1 (201-249)||(5883686-5883734)
chr1 (110-236)||(29092050-29092175)
chr1 (110-185)||(39886916-39886990)
chr1 (110-217)||(2909101-2909207)
chr1 (110-217)||(46001549-46001655)
chr1 (110-189)||(69745-69822)
chr1 (110-189)||(36886881-36886958)
[»] chr6 (8 HSPs)
chr6 (86-226)||(4089363-4089503)
chr6 (164-226)||(4464920-4464982)
chr6 (86-225)||(27793573-27793712)
chr6 (189-223)||(20584807-20584841)
chr6 (198-248)||(25073325-25073375)
chr6 (86-137)||(33212382-33212435)
chr6 (110-226)||(33590321-33590434)
chr6 (144-201)||(6688060-6688117)
[»] scaffold0248 (1 HSPs)
scaffold0248 (86-226)||(162-303)
[»] scaffold0028 (1 HSPs)
scaffold0028 (86-190)||(35421-35525)
[»] scaffold0598 (1 HSPs)
scaffold0598 (108-190)||(9395-9475)
[»] scaffold0053 (1 HSPs)
scaffold0053 (86-184)||(29261-29359)
[»] scaffold0031 (1 HSPs)
scaffold0031 (86-226)||(93472-93613)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 38679896 - 38680147
Alignment:
Q  1 ttttggaagtgtattttttaagagagtgataaattaatgnnnnnnnnnagtgataaattattgcttatgattaatatannnnnnnattttaagaatatta 100  Q
    ||||| |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||       |||||||||||||||    
T  38679896 ttttgaaagtgtattttttaagagagtgataaattaatggttttttttagtgataaattattgcttatgattaatatattttta-attttaagaatatta 38679994  T
Q  101 tgacgacatattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38679995 tgacgacatattatatttgaagaattcatataaacccgcccaaaaatcccccaaaactttctaccaatacaattatttagttccccaaataggaagagtt 38680094  T
Q  201 ttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcctat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38680095 ttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcctat 38680147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 33187778 - 33187944
Alignment:
Q  50 gtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaac 147  Q
    ||||||||||| |||||||||||||||||       |||||||||||||||| || | ||||  |||||||||||||||||||||||||| | ||||       
T  33187778 gtgataaattaatgcttatgattaatatattttta-attttaagaatattataacaatatatattatatttgaagaattcatataaaccctctcaaa--- 33187873  T
Q  148 cccccaaaactttctaccaatacaattatttagttccccaaat-aggaagagttttatattttgaagaaaaa 218  Q
    ||||||||||| ||  ||||||||||| ||||||||| ||||| |||| || ||||||||||||||||||||    
T  33187874 cccccaaaactctcctccaatacaattttttagttcctcaaatgaggatga-ttttatattttgaagaaaaa 33187944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 251
Target Start/End: Complemental strand, 1278089 - 1277887
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||| ||||||| |||||||||||||||||       |||||||||||||||| || ||||||  || ||||||||||||||||||||||| | ||||      
T  1278089 agtggtaaattagtgcttatgattaatatattttta-attttaagaatattataacaacatatattaaatttgaagaattcatataaaccctctcaaa-- 1277993  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaat--aggaagagttttatattttgaagaaaaataa-acccctatagccctctcctccc 243  Q
    ||  || ||||| ||  ||||||||||| ||||||||||||||   |||| | ||||||||||||||||||||||||  |||| | ||||| ||||||||    
T  1277992 ccttccgaaactctcatccaatacaattttttagttccccaaaatgaggatg-gttttatattttgaagaaaaataagccccccaaagccc-ctcctccc 1277895  T
Q  244 aatgtcct 251  Q
    ||||||||    
T  1277894 aatgtcct 1277887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 12624340 - 12624472
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || | ||||  || |||||||||||||||||||| || | ||||  ||  |||||||| |   ||||| ||| | ||||||||    
T  12624340 attttaagaatattataacaatatatattaaatttgaagaattcatataaaacctctcaaa--ccttccaaaactctactccaatgcaaatttttagttc 12624437  T
Q  184 cccaaataggaagagttttatattttgaagaaaaa 218  Q
    |||||||| |||||||||| |||||||||||||||    
T  12624438 cccaaataagaagagttttttattttgaagaaaaa 12624472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 42112956 - 42113065
Alignment:
Q  115 atttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaaga 214  Q
    ||||||| ||||||||||||||| || |||  |||||||||||  | | ||||||||| | |||||||||||||||  | |||||||  |||| ||||||    
T  42112956 atttgaaaaattcatataaaccctcctaaa--ccccccaaaaccctattccaatacaactttttagttccccaaatgaggagagtttagtattatgaaga 42113053  T
Q  215 aaaataaacccc 226  Q
    ||||| ||||||    
T  42113054 aaaattaacccc 42113065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 7391400 - 7391515
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatatt 207  Q
    |||||| |||| || |||||||||||| || |||| |   ||||||||||  ||  |||||||| || |||||||||||||||| | || ||||||||||    
T  7391400 atattaaatttaaaaaattcatataaatcctcccagat--cccccaaaaccctcatccaatacattt-tttagttccccaaataaggagggttttatatt 7391496  T
Q  208 ttgaagaaaaataaacccc 226  Q
    |||||||||||||| ||||    
T  7391497 ttgaagaaaaataagcccc 7391515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 30301968 - 30302027
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaac 223  Q
    ||||||||||| ||||||| | |||||  | |||||||||||||||||||||||||||||    
T  30301968 ccaatacaattttttagtttctcaaatgaggagagttttatattttgaagaaaaataaac 30302027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 42266973 - 42267115
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||| |||||||| ||||||||||||||    |||||||  ||||||| |||  ||||||||||| || | |||    
T  42266973 attttaagaatattataacaacatagattaaatttgaagcattcatataaacccta--aaaaaccttccaaaaccttcctccaatacaatttttgaattc 42267070  T
Q  184 cccaaataggaagagttttatattttgaagaaaaataaaccccta 228  Q
     ||||||   ||||||||| |||| ||||||||||| ||| ||||    
T  42267071 tccaaatgataagagttttgtattatgaagaaaaattaactccta 42267115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 4787933 - 4788108
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| |||||||||||||||||       ||||||| |||||||| || ||||||  || | ||||| ||||||| ||||||| ||||||      
T  4787933 agtgataaattaatgcttatgattaatatattttta-attttaaaaatattataacaacatatattaaaattgaaaaattcat-taaaccctcccaaat- 4788029  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaat-aggaagagttttatattttgaagaaaaataaacccc 226  Q
     ||| ||||||  |   ||||||||||| ||||||||||||||| |||| || ||||||||| ||||||||||||| ||||    
T  4788030 -ccctcaaaaccctactccaatacaattttttagttccccaaataaggatga-ttttatattatgaagaaaaataagcccc 4788108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 22556761 - 22556831
Alignment:
Q  180 gttccccaaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcct 251  Q
    |||||||||||  |||||||||||||||||||||||| |||| |||| | ||| | |||||| |||||||||    
T  22556761 gttccccaaatgagaagagttttatattttgaagaaatataagcccccaaagctc-ctcctcacaatgtcct 22556831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 13697390 - 13697263
Alignment:
Q  91 aagaatattatgacgacatattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagtt-ccccaaa 189  Q
    ||||||||||| || ||| |||| |||||||||||| |||||||||| ||  |||||  |||| |||  ||| ||||||||| | ||||||| |||||||    
T  13697390 aagaatattataacaacacattaaatttgaagaattaatataaaccctcc--aaaacttcccacaaccgtcttccaatacaactttttagttcccccaaa 13697293  T
Q  190 taggaagagttttatattttgaagaaaaat 219  Q
    |  | || ||||| |||| |||||||||||    
T  13697292 tgaggagggttttgtattatgaagaaaaat 13697263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 46611873 - 46611927
Alignment:
Q  166 aatacaattatttagttccc-caaataggaagagttttatattttgaagaaaaat 219  Q
    ||||||||| |||||||||| ||||| || || ||||||||||||||||||||||    
T  46611873 aatacaattttttagttccctcaaatggggagggttttatattttgaagaaaaat 46611927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 30081435 - 30081350
Alignment:
Q  144 aaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattttgaagaaaaataaaccccta 228  Q
    |||||| ||||||| | | ||| |||||||| ||||||||| |||| |  |||| ||||| |||||||||||||||||| ||||||    
T  30081435 aaaccctccaaaacctaccaccgatacaattttttagttcctccaagtgagaagggttttttattttgaagaaaaataagccccta 30081350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 31180011 - 31180067
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||||||||| |||||| || |||||  | |||||||||||||||||||||||||||    
T  31180011 ccaatacaattttttagt-cctcaaatgaggagagttttatattttgaagaaaaataa 31180067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 17884238 - 17884318
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaa--cccctatagccctctcctccca 244  Q
    ||||||||||| ||||||||| |||||| ||  |||||| |||| ||||||||||| ||  |||| | |||||||||||||||    
T  17884238 ccaatacaattttttagttcctcaaataaga--agttttgtattatgaagaaaaattaacccccccaaagccctctcctccca 17884318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 23772505 - 23772556
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaac 135  Q
    ||||||||||||||||||  ||||||  || |||||||||||||||||||||    
T  23772505 attttaagaatattatgaaaacatatattaaatttgaagaattcatataaac 23772556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 31055411 - 31055359
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaa 216  Q
    ||||||||||| |||||||||||||||  | || |||||||||||| ||||||    
T  31055411 ccaatacaattttttagttccccaaatgaggagggttttatattttaaagaaa 31055359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 38987401 - 38987373
Alignment:
Q  195 agagttttatattttgaagaaaaataaac 223  Q
    |||||||||||||||||||||||||||||    
T  38987401 agagttttatattttgaagaaaaataaac 38987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 46303272 - 46303244
Alignment:
Q  198 gttttatattttgaagaaaaataaacccc 226  Q
    |||||||||||||||||||||||||||||    
T  46303272 gttttatattttgaagaaaaataaacccc 46303244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 27085499 - 27085328
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| |||||||||||||||||       |||| || |||||||| || ||||||  || ||||||||||||||||||||||| ||||||      
T  27085499 agtgataaattaatgcttatgattaatatattttta-atttaaaaaatattataacaacatatattaaatttgaagaattcatataaaccctcccaaa-- 27085403  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||  |||||  ||  ||||||||||| |||||||||||||||  ||||||||||||||||| |||||||||||    
T  27085402 ccccttaaaaccatcctccaatacaattttttagttccccaaatgagaagagttttatattttaaagaaaaataa 27085328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 1839786 - 1839922
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagtt- 182  Q
    ||||||| |||||||| || ||||||  || ||||||||||||||||||||||  | |  ||||||||||||||  ||  ||||||||||| || ||||     
T  1839786 attttaaaaatattataacaacatatattaaatttgaagaattcatataaacc--ctcttaaaccccccaaaaccctcctccaatacaatttttaagttc 1839883  T
Q  183 ccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||||||  | || ||||||||||||||||||||||||    
T  1839884 ccccaaatgaggagggttttatattttgaagaaaaataa 1839922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 13406578 - 13406402
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatattat--atttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| |||||||||||||||||       |||||||||||||||| || ||||||  |  ||| ||| || |||  ||||||| ||||||      
T  13406578 agtgataaattaatgcttatgattaatatatttttg-attttaagaatattataacaacatatattgaattcgaaaaaatcacttaaaccctcccaaa-- 13406482  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    || ||||||||| ||| ||||| ||||| |||||||||||||||  | |  ||||||||||||||||||| |||| ||||    
T  13406481 cctcccaaaactctcttccaattcaattttttagttccccaaatgaggattgttttatattttgaagaaatataagcccc 13406402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 5911471 - 5911533
Alignment:
Q  165 caatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccct 227  Q
    |||||||||| |||||||||||||||  | || |||||||||||| |||||||||||||||||    
T  5911471 caatacaattttttagttccccaaatgaggagggttttatattttaaagaaaaataaacccct 5911533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 28416205 - 28416267
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||||| | |||||||||||||| | || |||||||||||||||||||||||| ||||    
T  28416205 ccaatacaattttgtagttccccaaataaggagggttttatattttgaagaaaaataaccccc 28416267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 39194043 - 39193882
Alignment:
Q  89 ttaagaatattatgacgacatattata--tttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcccc 186  Q
    ||||||||||||| || |||||  |||  ||||||||||||||||||||||  |  ||||||||| |||||  ||  ||||||||| | |||||||||||    
T  39194043 ttaagaatattataacaacatagaataaatttgaagaattcatataaacccttc--aaaacccccaaaaaccctcctccaatacaactttttagttcccc 39193946  T
Q  187 aaataggaaga--gttttatattttgaagaaaaa-taaacccctatagccctctcctcccaatgt 248  Q
     || | |||||  |||||||||| |||||||||| ||| |||| | ||||||| |||||||||||    
T  39193945 caa-atgaagagggttttatattatgaagaaaaattaaccccccaaagccctcccctcccaatgt 39193882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 41455293 - 41455231
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||||| ||||||| |||||||  | || |||||||||||||||||||||||| ||||    
T  41455293 ccaatacaattttttagtttcccaaatgaggagggttttatattttgaagaaaaataagcccc 41455231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 31297345 - 31297418
Alignment:
Q  115 atttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat 190  Q
    ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| |||||||||||||||    
T  31297345 atttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcctccaatacaattttttagttccccaaat 31297418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 36906302 - 36906202
Alignment:
Q  86 attttaagaatattatgacgacat--attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||||||||||||||| ||||  |||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  36906302 attttaagaatattatgacaacatagattggatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 36906205  T
Q  184 ccc 186  Q
    |||    
T  36906204 ccc 36906202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 1942019 - 1942122
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  1942019 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 1942116  T
Q  184 cccaaa 189  Q
    ||||||    
T  1942117 cccaaa 1942122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 5858308 - 5858387
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaata-aacccctatagccctctcctcc 242  Q
    ||||||||||| ||||||| |||||||    || ||||||||||||||||||||||| | |||| | |||||||||||||    
T  5858308 ccaatacaattttttagtttcccaaatgatgagggttttatattttgaagaaaaatataccccccaaagccctctcctcc 5858387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 21173824 - 21173975
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  |||||||||||||||  ||  |||||| |||| ||||||||    
T  21173824 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaaccccccaaaaccctcctccaatataattttttagttc 21173921  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccctatagccctc 236  Q
    | ||||||  | || ||||| |||| ||||||||| | |||||| | |||||||    
T  21173922 ctccaaatgaggagggttttgtattatgaagaaaagttaacccccaaagccctc 21173975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 16424253 - 16424200
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaaccc 137  Q
    |||||||||||||||| || ||||||  || |||||||||||||||||||||||    
T  16424253 attttaagaatattataactacatatattaaatttgaagaattcatataaaccc 16424200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 32268 - 32216
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacc 136  Q
    |||||||||||||||| || |||||  ||| ||||||||||||||||||||||    
T  32268 attttaagaatattataacaacataaattacatttgaagaattcatataaacc 32216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 34272630 - 34272525
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttag-tt 182  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | ||||||||||||| |||  ||||||||||| || || ||    
T  34272630 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccttcccccaatacaatttttgagttt 34272533  T
Q  183 ccccaaat 190  Q
    ||||||||    
T  34272532 ccccaaat 34272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 39778915 - 39778867
Alignment:
Q  90 taagaatattatgacga--catattatatttgaagaattcatataaacc 136  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  39778915 taagaatattatgacaatacatattaaatttgaagaattcatataaacc 39778867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 41455374 - 41455323
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaac 135  Q
    |||||||||||||||| || ||||||  || |||||||||||||||||||||    
T  41455374 attttaagaatattataacaacatatattaaatttgaagaattcatataaac 41455323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 53888602 - 53888461
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagtt- 182  Q
    |||||||||||||||| || ||||||  || ||||||||||||||||||||||| |||  ||||||||||||||  ||  ||||||||||| |||||||     
T  53888602 attttaagaatattattacaacatatattaaatttgaagaattcatataaaccctccc--aaaccccccaaaaccctcctccaatacaattttttagttc 53888505  T
Q  183 ccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||| | | || |||||||||||||||||||||||| ||||    
T  53888504 ccccaaacaaggagggttttatattttgaagaaaaataagcccc 53888461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 35283202 - 35283061
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || ||||||  || || |||||||||||||||||||| ||||||  |||| |||||| |||  ||||||||||| ||||||||    
T  35283202 attttaagaatattataacaacatatattaaatatgaagaattcatataaaccctcccaaa--cccctcaaaaccttcctccaatacaattttttagttc 35283105  T
Q  184 ccc-aaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||| ||||  | || |||||||||||||||||||||| ||||||    
T  35283104 ccccaaatgaggagggttttatattttgaagaaaaattaacccc 35283061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 27681954 - 27681787
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatattatatttgaagaattcatataaacccgcccaaaaacc 148  Q
    |||||||||||| |||||||||||||||||       |||||||||||||||| || | |||||| |||||| |||||||||||||  |||||   ||||    
T  27681954 agtgataaattaatgcttatgattaatatattttta-attttaagaatattataac-atatattaaatttgaggaattcatataaa-acgccc---aacc 27681861  T
Q  149 ccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||||||| ||| |||||||||| | ||||||||| ||||||    || |||||||||||| |||||||||||    
T  27681860 ccccaaaaccttccaccaatacaactttttagttcctccaaatgacgagggttttatatttttaagaaaaataa 27681787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 48444596 - 48444486
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat-aggaagagttttatat 206  Q
    |||||| |||||| |||||||||||||||| |||| | ||||   |||||  ||  ||||||||||| ||||| ||||||||| |||||| |||||||||    
T  48444596 atattaaatttgaggaattcatataaaccctcccagacaccc---aaaaccctcatccaatacaattttttagatccccaaatgaggaag-gttttatat 48444501  T
Q  207 tttgaagaaaaataa 221  Q
    |||||||||||||||    
T  48444500 tttgaagaaaaataa 48444486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 50345691 - 50345777
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcct 251  Q
    ||||||||||| ||||||||||||||   | || |||||||||||||||||||||||| | |||| | ||| ||||||||||||||||    
T  50345691 ccaatacaattctttagttccccaaacgaggagtgttttatattttgaagaaaaataagctcctaaaaccc-ctcctcccaatgtcct 50345777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 32858945 - 32858804
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||| |||||| |||||||| ||||||| ||  |||||||||||||||| ||  | ||||||||| || |||||    
T  32858945 attttaagaatattataactacatagattaaatttgatgaattcatgtaaaccctcc--aaaaccccccaaaactctcctcgaatacaatttttgagttc 32858848  T
Q  184 ccc-aaat-aggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||| |||| |||| || ||||||||| ||||||||||| ||||||    
T  32858847 ccccaaatgaggagga-ttttatattatgaagaaaaatgaacccc 32858804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 2927909 - 2927802
Alignment:
Q  144 aaaccccccaaaactttctaccaatacaattatttagttccc-caaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcc 242  Q
    ||||||||||||||  ||| ||||||||||| |||||||||| |||| | |||| |||||||||||||||   |||||| |||| | || ||||||||||    
T  2927909 aaaccccccaaaaccatcttccaatacaattttttagttccctcaaacaagaagggttttatattttgaaattaaataagcccccaaag-cctctcctcc 2927811  T
Q  243 caatgtcct 251  Q
    |||| ||||    
T  2927810 caatttcct 2927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 19148318 - 19148222
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaa 144  Q
    |||||||||||| |||||||||||||||||       |||||||||||||||| || |||||  ||| |||||||| |||||||||||||| ||||||    
T  19148318 agtgataaattaatgcttatgattaatatattttta-attttaagaatattataacaacataaattaaatttgaagcattcatataaaccctcccaaa 19148222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 27922050 - 27921913
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatatttt 209  Q
    |||| ||||||||||||||| ||||||  ||   ||||||||||||||  ||| ||||||||| | || |||| || | |   | || ||||||||||||    
T  27922050 attaaatttgaagaattcatgtaaacctccc---aaaccccccaaaaccctcttccaatacaacttttgagtttccaagacgaggagggttttatatttt 27921954  T
Q  210 gaagaaaaataaacccctatagccctctcctcccaatgtcct 251  Q
    ||| ||||||||||||| | || |||||||||||||||||||    
T  27921953 gaa-aaaaataaacccccaaagtcctctcctcccaatgtcct 27921913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 51686595 - 51686517
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat 190  Q
    |||| ||||||| ||||||||||||||| ||  ||||||||| |||||  ||  ||||||||||| |||||||||||||||    
T  51686595 attaaatttgaaaaattcatataaaccctcc--aaaacccccaaaaaccctcctccaatacaattttttagttccccaaat 51686517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 33944632 - 33944757
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattt 208  Q
    |||| ||||||||||||| ||| ||||| ||  |||||||||||||||  ||  ||||||||||| ||||||||| ||||||  | || ||||| ||||     
T  33944632 attaaatttgaagaattcttattaaccctcc--aaaaccccccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtatta 33944729  T
Q  209 tgaagaaaaataaacccctatagccctc 236  Q
    ||||||||| | |||||| | |||||||    
T  33944730 tgaagaaaagttaacccccaaagccctc 33944757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3458330 - 3458387
Alignment:
Q  164 ccaatacaattatttagttccccaaat-aggaagagttttatattttgaagaaaaataa 221  Q
    ||||||||||| ||||||||||||||  |||| | ||||||||||||||||||||||||    
T  3458330 ccaatacaattttttagttccccaaacgaggacg-gttttatattttgaagaaaaataa 3458387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 46891535 - 46891404
Alignment:
Q  51 tgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaacc 148  Q
    |||||||||| | |||||||||||||||       |||||||||||||||| || ||||||  || |||||||||||| ||||||| || | ||||  ||    
T  46891535 tgataaattaatacttatgattaatatattttta-attttaagaatattataacaacatatattaaatttgaagaatttatataaatcctcacaaa--cc 46891439  T
Q  149 ccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||| ||  | ||||||||| ||||||||    
T  46891438 ccccaaaactctcctctaatacaattttttagttc 46891404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 54090274 - 54090330
Alignment:
Q  195 agagttttatattttgaagaaaaataaac-ccctatagccctctcctcccaatgtcct 251  Q
    ||||||||||||||||||||||||||||| ||||| || || |||||| |||||||||    
T  54090274 agagttttatattttgaagaaaaataaacaccctaaagtcc-ctcctctcaatgtcct 54090330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 3333955 - 3333919
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaa 144  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  3333955 atattaaatttgaagaattcatataaaccctcccaaa 3333919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 47714639 - 47714743
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | ||||| |||||||  ||  ||||||||||| || |||||    
T  47714639 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccctccaaaaccctcccccaatacaatttttgagttc 47714736  T
Q  184 cccaaat 190  Q
    |||||||    
T  47714737 cccaaat 47714743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 47789412 - 47789512
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  47789412 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 47789509  T
Q  184 ccc 186  Q
    |||    
T  47789510 ccc 47789512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 6491333 - 6491135
Alignment:
Q  51 tgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaacc 148  Q
    |||||||||| |||||||||||||||||       |||||||||||||||| || |||||  ||| ||||||||||||||||||||||| || ||| |||    
T  6491333 tgataaattaatgcttatgattaatatattttta-attttaagaatattataacaacataagttaaatttgaagaattcatataaaccctccgaaacacc 6491235  T
Q  149 ccccaaaactttctaccaatacaattatttagttcccc-aaat-aggaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaat 246  Q
    ||  ||||  |||  ||||||||||| || |||||||| |||| ||||||| |||| |||| ||||||||||| |||||| | ||||||||||| |||||    
T  6491234 cc--aaaatcttcctccaatacaatttttgagttcccccaaatgaggaaga-ttttgtattatgaagaaaaatgaacccccaaagccctctcctaccaat 6491138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 6373289 - 6373123
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| | ||||||||||||| |       ||||||||||||| || || ||||||  || |||| || ||||||||||||||| ||||||      
T  6373289 agtgataaattaatacttatgattaatacattttttaattttaagaatatcataacaacatatattaaatttaaaaaattcatataaaccctcccaaa-- 6373192  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaa 215  Q
    |||||||||||||||  | ||||||||| |||||||||||||||  | || ||||||||||||||||||    
T  6373191 ccccccaaaactttcctcgaatacaattttttagttccccaaatgaggagggttttatattttgaagaa 6373123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 1935037 - 1935142
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| |||||||||||||||||       |||||||||||||||| || ||||||  || |||||||||||||| |||||||| ||  ||||    
T  1935037 agtgataaattaatgcttatgattaatatattttta-attttaagaatattataacaacatatattaaatttgaagaattcacataaaccctcc--aaaa 1935133  T
Q  147 ccccccaaa 155  Q
    |||||||||    
T  1935134 ccccccaaa 1935142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 29022655 - 29022598
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||||||||| |||||||||  ||||  | |||||||||||||||||||||||||||    
T  29022655 ccaatacaattttttagttccttaaatgaggagagttttatattttgaagaaaaataa 29022598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 39429032 - 39428908
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat-aggaagagttttatat 206  Q
    |||||| |||||||||||||||||||||   | ||||  || ||||||||  ||  | ||||||||| ||||||||| ||||| ||||||| ||||||||    
T  39429032 atattaaatttgaagaattcatataaactttctcaaa--ccacccaaaaccctcctctaatacaattttttagttcctcaaatgaggaaga-ttttatat 39428936  T
Q  207 tttgaagaaaaataaacccctatagccc 234  Q
    |||||||| |||||| || ||| |||||    
T  39428935 tttgaagataaataagccgctaaagccc 39428908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 29799683 - 29799626
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    |||||||| || |||||||||||| |||   || ||||||||||||||||||||||||    
T  29799683 ccaatacagttttttagttccccacataaagagggttttatattttgaagaaaaataa 29799626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 43496905 - 43496977
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccctatagccctc 236  Q
    ||||||||||| || ||||||||||||  | |||||||| |||| | ||||||||| |||||| | |||||||    
T  43496905 ccaatacaatttttaagttccccaaatgagcagagttttgtattattaagaaaaattaacccccaaagccctc 43496977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 11522146 - 11522288
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || ||||||  || ||||||||||||||||||||||| |||  ||||||||||||||  ||  ||||||||| | ||||||||    
T  11522146 attttaagaatattataacaacatatattaaatttgaagaattcatataaaccctccc--aaaccccccaaaaccctcctccaatacaactttttagttc 11522243  T
Q  184 cccaaataggaagagttttata-ttttgaagaaaaataaacccct 227  Q
    |||||||  | || |||||||| |||||||||||||||| |||||    
T  11522244 cccaaatgaggagggttttatatttttgaagaaaaataagcccct 11522288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 9087395 - 9087562
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| |||||||||||||||||       ||||||| ||||||||||| ||||||  || ||||||||||||||||||||| | ||||||      
T  9087395 agtgataaattaatgcttatgattaatatattttta-attttaataatattatgacaacatatattaaatttgaagaattcatataaactctcccaaa-- 9087491  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaa 217  Q
    ||||||||||   ||  || |||||||| || ||||||||||||  | || ||||||||||||||||||||    
T  9087492 ccccccaaaatcctcctccgatacaatttttcagttccccaaatgaggagggttttatattttgaagaaaa 9087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 31584734 - 31584873
Alignment:
Q  88 tttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccc 185  Q
    |||||||||||||| || ||||||  || ||||||||| ||||||||||||| | ||||  ||||||||||   ||   ||||| |||| ||||||||||    
T  31584734 tttaagaatattataacaacatatattaaatttgaagacttcatataaaccctctcaaa--ccccccaaaatcctccttcaatataattttttagttccc 31584831  T
Q  186 caaataggaagagttttatattttgaagaaaaataaacccct 227  Q
    |||||  | || |||||||||||||||||||||||| |||||    
T  31584832 caaatgaggagggttttatattttgaagaaaaataagcccct 31584873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 43572510 - 43572661
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  |||||||||||||||| ||  ||||||||||| ||||||||    
T  43572510 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaaccccccaaaactctcctccaatacaattttttagttc 43572607  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccctatagccctc 236  Q
    | ||||||  | || ||||| |||| ||||||||| | |||||| | |||||||    
T  43572608 ctccaaatgaggagggttttgtattatgaagaaaagttaacccccaaagccctc 43572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 11949962 - 11949881
Alignment:
Q  143 aaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaaccc 225  Q
    |||| |||| |||||||||  ||||| ||||| |||||||||||||||  |||||||||| |||| |||||||||||||||||    
T  11949962 aaaatccccaaaaactttcatccaatgcaatt-tttagttccccaaatgagaagagttttgtattatgaagaaaaataaaccc 11949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 567475 - 567369
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatatttt 209  Q
    |||| ||||||||||||||| ||||||| ||  |||||| || |||||||||  | ||||||||| || ||||||| ||||  | ||||||||||| |||    
T  567475 attaaatttgaagaattcatgtaaaccctcc--aaaacctccaaaaactttcctctaatacaatttttgagttccctaaatgaggagagttttataattt 567378  T
Q  210 gaagaaaaa 218  Q
    |||||||||    
T  567377 gaagaaaaa 567369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 27987672 - 27987613
Alignment:
Q  193 gaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcctat 253  Q
    ||||||||||||||||||||||||||||| |||| | ||||| ||||| ||||||||||||    
T  27987672 gaagagttttatattttgaagaaaaataagcccccaaagccc-ctccttccaatgtcctat 27987613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 28074205 - 28074146
Alignment:
Q  193 gaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcctat 253  Q
    ||||||||||||||||||||||||||||| |||| | ||||| ||||| ||||||||||||    
T  28074205 gaagagttttatattttgaagaaaaataagcccccaaagccc-ctccttccaatgtcctat 28074146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 44656716 - 44656846
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || ||||||  || ||||||| |||||| |||||||| | ||||  ||| |||||||  || ||||||||| || ||||||||    
T  44656716 attttaagaatattataacaacatatattaaatttgaacaattcacataaaccctctcaaa--ccctccaaaaccctccaccaatacagtt-tttagttc 44656812  T
Q  184 cccaaat-aggaagagttttatattttgaagaaaa 217  Q
    ||||||| |||| || |||||||||||||||||||    
T  44656813 cccaaatgaggatga-ttttatattttgaagaaaa 44656846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 34757690 - 34757589
Alignment:
Q  115 atttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattttgaag 213  Q
    ||||||||||||||||||| ||| || ||||||||||||||||  ||  ||||||||||| ||||||||| ||||||  | || ||||| |||| |||||    
T  34757690 atttgaagaattcatataagccctcc-aaaaaccccccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaag 34757592  T
Q  214 aaa 216  Q
    |||    
T  34757591 aaa 34757589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 11515159 - 11515018
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  |||||||||||||||  ||  ||||||||||| ||||||||    
T  11515159 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaaccccccaaaaccctcctccaatacaattttttagttc 11515062  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||  | || ||||| |||| ||||||||| | ||||||    
T  11515061 ctccaaatgaggagggttttgtattatgaagaaaagttaacccc 11515018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 28539418 - 28539496
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat 190  Q
    |||| ||||||||||||||||||||||| ||  |||| |||||||| || ||  ||||||||||| |||||| ||||||||    
T  28539418 attaaatttgaagaattcatataaaccctcc--aaaatcccccaaagctctcatccaatacaattttttagtcccccaaat 28539496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 13765905 - 13766009
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  13765905 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--acaaccccccaaaaccctcccccaatacaatttttgagttc 13766002  T
Q  184 cccaaat 190  Q
    |||||||    
T  13766003 cccaaat 13766009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 9087628 - 9087795
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||| || ||||||||||||||       ||||||| ||||||||||| | ||||  || ||||||| ||||||||||||| | |||  |||    
T  9087628 agtgataaattaatgtttatgattaatatattttta-attttaataatattatgacaatatatattaaatttgaataattcatataaactctccc--aaa 9087724  T
Q  147 ccccccaaaactttctaccaatacaattatttagttccc-caaataggaagagttttatattttgaagaaaa 217  Q
    |||||||||||  ||  || |||||||| |||||||||| |||||  | || ||||||||||||||| ||||    
T  9087725 ccccccaaaaccatcctccgatacaatt-tttagttccctcaaatgaggagggttttatattttgaaaaaaa 9087795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 39181103 - 39181057
Alignment:
Q  175 atttagttccccaaataggaagagttttatattttgaagaaaaataa 221  Q
    |||||||||| |||||  | |||||||||||||||||||||||||||    
T  39181103 atttagttcctcaaatgaggagagttttatattttgaagaaaaataa 39181057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 15555390 - 15555463
Alignment:
Q  164 ccaatacaattatttagttcc-ccaaataggaagagttttatattttgaagaaaaataaacccctatagccctc 236  Q
    ||||||||||| ||||||||| ||||||  |||| ||||| |||| ||||||||||| |||||| | |||||||    
T  15555390 ccaatacaattttttagttcctccaaatgagaagggttttgtattatgaagaaaaattaacccccaaagccctc 15555463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 37194382 - 37194241
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  ||||||||| |||||  ||  ||||||||||| ||||||||    
T  37194382 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaacccccaaaaaccctcctccaatacaattttttagttc 37194285  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||  | || ||||| |||| ||||||||| | ||||||    
T  37194284 ctccaaatgaggagggttttgtattatgaagaaaagttaacccc 37194241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 18826192 - 18826292
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  18826192 attttaagaatattataacaacataaattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 18826289  T
Q  184 ccc 186  Q
    |||    
T  18826290 ccc 18826292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 32761252 - 32761319
Alignment:
Q  86 attttaagaatattatgacgacat--attatatttgaagaattcatataaacccgcccaaaaaccccc 151  Q
    |||||||||||||||| | | |||  |||| |||||| |||||||||||||||| || ||||||||||    
T  32761252 attttaagaatattataatgtcatggattaaatttgacgaattcatataaaccccccaaaaaaccccc 32761319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 36567244 - 36567344
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | ||||||| |||||| ||  ||||||||||| || |||||    
T  36567244 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccctaaaactctcccccaatacaatttttgagttc 36567341  T
Q  184 ccc 186  Q
    |||    
T  36567342 ccc 36567344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 40357572 - 40357472
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||  ||  | |||||||||||||  ||| ||||||||||| || |||||    
T  40357572 attttaagaatattataacaacatagattggatttgaaaaattcatataaaccttcc--ataaccccccaaaaccctctcccaatacaatttttgagttc 40357475  T
Q  184 ccc 186  Q
    |||    
T  40357474 ccc 40357472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 42650751 - 42650614
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||||||||  ||||||  || ||||||||  ||  ||||||||||| ||||||||    
T  42650751 attttaagaatattataacgacataaattaaatttgaagaattcatataaaccatcccaaa--cctcccaaaaccctcctccaatacaattttttagttc 42650654  T
Q  184 ccc-aaataggaagagttttatattttgaagaaaaataaa 222  Q
    ||| ||||  | || |||||||||||||||||||||||||    
T  42650653 ccccaaatgaggagggttttatattttgaagaaaaataaa 42650614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 46669877 - 46670047
Alignment:
Q  51 tgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaacc 148  Q
    |||||||||  |||||||||||||||||       |||||||||||||||| || ||||||  || |||| |||||||||||||||||| | || |  |     
T  46669877 tgataaatttatgcttatgattaatatattttta-attttaagaatattataacaacatatattaaatttaaagaattcatataaaccctctcaca--ct 46669973  T
Q  149 ccccaaaactttctaccaatacaattatttagttccc-caaataggaagagttttatattttgaagaaaaataa 221  Q
     ||||||||||||| | ||||||||| |||||||||| |||||  | || ||||||||||||||||||||||||    
T  46669974 tcccaaaactttcttctaatacaattttttagttccctcaaatgaggagggttttatattttgaagaaaaataa 46670047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 9119756 - 9119887
Alignment:
Q  89 ttaagaatattatgacgac--atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcccc 186  Q
    ||||||||||||| || ||  |||||| |||||||||||||||||||| |  |||||| || |   |||||  ||  ||||||||||  ||||||| |||    
T  9119756 ttaagaatattataacaacgtatattaaatttgaagaattcatataaatcttcccaaatactc---aaaaccctcctccaatacaatattttagtttccc 9119852  T
Q  187 aaataggaagagttttatattttgaagaaaaataa 221  Q
    ||||  | |||||||||||||||||||||||||||    
T  9119853 aaatgaggagagttttatattttgaagaaaaataa 9119887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 47063729 - 47063642
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcct 251  Q
    ||||||||||| |||||||||||||||  | || |||||||||||| ||||||||||| ||||   |  |||||||||| ||||||||    
T  47063729 ccaatacaattttttagttccccaaatgaggagggttttatattttaaagaaaaataagccccccaaaacctctcctccgaatgtcct 47063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 55813670 - 55813732
Alignment:
Q  164 ccaatacaattatttagttccccaaat-aggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  55813670 ccaatacaattttttagtttcccaaatgaggaaga-ttttatattttgaagaaaaataagcccc 55813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 12708800 - 12708941
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  |||||||||||||||  ||  ||||||||||| ||||||||    
T  12708800 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaaccccccaaaaccctcctccaatacaattttttagttc 12708897  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||  | || ||||| |||| ||||||||| | ||||||    
T  12708898 ctccaaatgaggagggttttgtattatgaagaaaagttaacccc 12708941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 48620440 - 48620339
Alignment:
Q  49 agtgataaattattgcttatgattaatatannnnnnnattttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaa 146  Q
    |||||||||||  |||||||||||||||||       |||||||||||||||| || ||||||  || ||||||||||||||||||| ||| ||| ||||    
T  48620440 agtgataaattcatgcttatgattaatatattttta-attttaagaatattataacaacatatattaaatttgaagaattcatataacccccccccaaaa 48620342  T
Q  147 ccc 149  Q
    |||    
T  48620341 ccc 48620339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 29576191 - 29576238
Alignment:
Q  176 tttagttccccaaataggaagagttttatattttgaagaaaaataaac 223  Q
    |||||||||||||||  | || ||||||||||||||||||||||||||    
T  29576191 tttagttccccaaatgaggagcgttttatattttgaagaaaaataaac 29576238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 3075732 - 3075782
Alignment:
Q  86 attttaagaatattatgacgacatattatatttgaagaattcatataaacc 136  Q
    ||||||| ||||| || || |||||||| ||||||||||||||||||||||    
T  3075732 attttaaaaatatgataacaacatattaaatttgaagaattcatataaacc 3075782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 23902509 - 23902562
Alignment:
Q  198 gttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtccta 252  Q
    |||| ||||||||||||||||||||| |||| ||||| ||||||| |||||||||    
T  23902509 gtttcatattttgaagaaaaataaactcctaaagccc-ctcctcctaatgtccta 23902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 7182157 - 7182257
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  7182157 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 7182254  T
Q  184 ccc 186  Q
    |||    
T  7182255 ccc 7182257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 40423039 - 40423090
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaac 135  Q
    |||||||||||||||| || |||||  ||| |||||||||||||||||||||    
T  40423039 attttaagaatattataacaacatagattaaatttgaagaattcatataaac 40423090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 34552134 - 34552218
Alignment:
Q  167 atacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcccaatgtcct 251  Q
    |||||||| ||||||||| |||||  | || |||||||||||| |||||||||||||||| | ||| ||||||||| ||||||||    
T  34552134 atacaattttttagttcctcaaatgaggagggttttatattttaaagaaaaataaacccccaaagctctctcctcctaatgtcct 34552218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 41432728 - 41432865
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgccca--aaaaccccccaaaactttctaccaatacaattatttagt 181  Q
    |||||||||||||||| || |||||  ||| ||||||||||||||| ||||||| || |  |||||||||||||||  ||  ||||||||| | || |||    
T  41432728 attttaagaatattataactacatagattaaatttgaagaattcatgtaaaccctccaaccaaaaccccccaaaaccctcctccaatacaaattttgagt 41432827  T
Q  182 tccccaaataggaagagttttatattttgaagaaaaat 219  Q
     ||||||||  | || |||||||||| |||||||||||    
T  41432828 cccccaaatgaggagggttttatattatgaagaaaaat 41432865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 12625848 - 12625930
Alignment:
Q  144 aaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||||||||| ||  ||||||||| | |||||||| ||||||  | ||| ||||||||||||||||||||||| ||||    
T  12625848 aaaccccccaaaactctcctccaatacaagtttttagttctccaaatgaggagatttttatattttgaagaaaaataagcccc 12625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 17556724 - 17556616
Alignment:
Q  144 aaaccccccaaaactttctaccaatacaattatttagttcccc-aaataggaagagttttatattttgaagaaaaataaacccctatagccctctcctcc 242  Q
    ||||||||||||||  ||  |||||| |||| ||||||||||| ||||  | || |||||||||||||||||||||||| ||||   |  ||||||||||    
T  17556724 aaaccccccaaaaccctcctccaatagaattttttagttcccccaaatgaggagggttttatattttgaagaaaaataagccccccaaagcctctcctcc 17556625  T
Q  243 caatgtcct 251  Q
    |||||||||    
T  17556624 caatgtcct 17556616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 25561308 - 25561414
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat-aggaagagttttatat 206  Q
    |||||| ||||||||||||||||||||| | ||||||   ||||||||||  ||  |||||| |||| ||||||||||||||| | || | |||||||||    
T  25561308 atattaaatttgaagaattcatataaactctcccaaa---cccccaaaaccctcctccaatataattttttagttccccaaatgacgatg-gttttatat 25561403  T
Q  207 tttgaagaaaa 217  Q
    |||||||||||    
T  25561404 tttgaagaaaa 25561414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 42806285 - 42806151
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| |||||||||||||||| | |||  | ||||  ||| ||||||| | || ||||||||||| |||||| |    
T  42806285 attttaaaaatattataacaacatagattaaatttgaagaattcatacataccgtcacaaa--ccctccaaaacct-cttccaatacaattttttagtcc 42806189  T
Q  184 cccaaataggaagagttttatattttgaagaaaaataa 221  Q
    || ||||  |||| ||||||||||||||||||||||||    
T  42806188 ccaaaatgagaagggttttatattttgaagaaaaataa 42806151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 50097664 - 50097602
Alignment:
Q  164 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||| | ||||||||| |||||| | |  |||||||||||||||||||||||||||||    
T  50097664 ccaatacaactttttagttcctcaaataaggatggttttatattttgaagaaaaataaacccc 50097602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 5584620 - 5584479
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||||||||  |||||||||  ||  ||||||||||| ||||||||    
T  5584620 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcccaaaaa--ccccaaaaccctcctccaatacaattttttagttc 5584523  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||  | || ||||| |||| ||||||||| | ||||||    
T  5584522 ctccaaatgaggagggttttgtattatgaagaaaagttaacccc 5584479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 36269827 - 36269717
Alignment:
Q  115 atttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagtt-ccccaaataggaagagttttatattttgaag 213  Q
    |||||||||||||||||||| || ||  |||||||||| ||||| ||  ||||||||||| ||||||| ||||||||  | || ||||| |||| |||||    
T  36269827 atttgaagaattcatataaatcctcc--aaaaccccccgaaactctcctccaatacaattttttagttcccccaaatgaggagggttttgtattatgaag 36269730  T
Q  214 aaaaataaacccc 226  Q
    |||| | ||||||    
T  36269729 aaaagttaacccc 36269717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 43036289 - 43036349
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaa 144  Q
    |||||||||||||||| || |||||  ||| ||||||||||||||||||||||| ||||||    
T  43036289 attttaagaatattataacaacatagattaaatttgaagaattcatataaaccctcccaaa 43036349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 49102996 - 49103084
Alignment:
Q  164 ccaatacaattatttagttcccc-aaataggaagagttttatattttgaagaaaaataaaccc-ctatagccctctcctcccaatgtcct 251  Q
    ||||||||||| ||||||||||| ||||  | || ||||||| |||||||||||||||||||| | | ||||| ||||||||||||||||    
T  49102996 ccaatacaattttttagttcccccaaatgaggagggttttatgttttgaagaaaaataaaccctccaaagccc-ctcctcccaatgtcct 49103084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 1688214 - 1688287
Alignment:
Q  115 atttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat 190  Q
    ||||||| ||||||||||||||| ||  | |||||||||||||| ||  ||||||||||| || ||||||||||||    
T  1688214 atttgaaaaattcatataaaccctcc--ataaccccccaaaactctcccccaatacaatttttgagttccccaaat 1688287  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 5883686 - 5883734
Alignment:
Q  201 ttatattttgaagaaaaataaacccctatagccctctcctcccaatgtc 249  Q
    |||||||||||||||||||||||||| | ||| ||||||||| ||||||    
T  5883686 ttatattttgaagaaaaataaacccccaaagctctctcctcctaatgtc 5883734  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 29092175 - 29092050
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattt 208  Q
    |||| |||| |||||||| ||| ||||| ||  |||||||||||||||| ||  ||||||||||| ||||||||| ||||||  | || ||||| ||||     
T  29092175 attaaatttaaagaattcttattaaccctcc--aaaaccccccaaaactctcctccaatacaattttttagttcctccaaatgaggagggttttgtatta 29092078  T
Q  209 tgaagaaaaataaacccctatagccctc 236  Q
    ||||||||| | |||||| | |||||||    
T  29092077 tgaagaaaagttaacccccaaagccctc 29092050  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 39886916 - 39886990
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccc 185  Q
    |||| ||||||||||||||||||||| |  |||||||||||| |||  ||| | ||||||||||| ||||||||||    
T  39886916 attaaatttgaagaattcatataaactc-tccaaaaacccccaaaactttttttccaatacaattttttagttccc 39886990  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 2909207 - 2909101
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattt 208  Q
    |||| ||||||||||||| ||| ||||| ||  |||||||||||||||  ||  ||||||||||| ||||||||| ||||||  | || ||||| ||||     
T  2909207 attaaatttgaagaattcttattaaccctcc--aaaaccccccaaaaccctcctccaatacaattttttagttcctccaaatgagtagggttttctatta 2909110  T
Q  209 tgaagaaaa 217  Q
    |||||||||    
T  2909109 tgaagaaaa 2909101  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 46001655 - 46001549
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttcc-ccaaataggaagagttttatattt 208  Q
    |||| ||||||||||||| ||| |||||  |  |||||||||||||||| ||  | ||||||||| ||||||||| ||||||  | || ||||||||||     
T  46001655 attaaatttgaagaattcttattaaccctac--aaaaccccccaaaactctcctcaaatacaattttttagttcctccaaatgaggagggttttatatta 46001558  T
Q  209 tgaagaaaa 217  Q
    |||||||||    
T  46001557 tgaagaaaa 46001549  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 69822 - 69745
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaa 189  Q
    |||| ||||| |||||||||||||||||  |  |||| || ||||||||||| | |||||||||| ||||||||| ||||    
T  69822 attaaatttggagaattcatataaacccttc--aaaatcctccaaaactttccatcaatacaattttttagttcctcaaa 69745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 36886958 - 36886881
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaa 189  Q
    |||| ||||||| ||||||||||||||| ||  ||||||||| |||||  ||  ||||| ||||| ||||||||||||||    
T  36886958 attaaatttgaaaaattcatataaaccctcc--aaaacccccaaaaaccctcctccaatgcaattttttagttccccaaa 36886881  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 4089363 - 4089503
Alignment:
Q  86 attttaagaatattatgacgacatat--tatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| ||||||||||| ||||||  || |||||||||| || ||||||| |  |||||  ||||| ||| | |||| |||||||||||  |||||||    
T  4089363 attttaaaaatattatgacaacatatattaaatttgaagaaatcgtataaactcttccaaag-cccccaaaatccttct-ccaatacaatttcttagttc 4089460  T
Q  184 cccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | |||||  | ||||||||||||||||||||||||||| ||||    
T  4089461 ctcaaatgaggagagttttatattttgaagaaaaataagcccc 4089503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 4464982 - 4464920
Alignment:
Q  164 ccaatacaattatttagttccccaaat-aggaagagttttatattttgaagaaaaataaacccc 226  Q
    ||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  4464982 ccaatacaattttttagttccccaaatgaggaag-gttgtatattttgaagaaaaataagcccc 4464920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 27793573 - 27793712
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||| | || |||||  ||||||||||| |||||||| |||||  ||||||  | |||||||||| ||   |||| ||||  |||||||     
T  27793573 attttaagaatattttaacaacataggttatatttgaaaaattcatacaaaccttcccaaa--ctccccaaaactctccttcaatccaatattttagttt 27793670  T
Q  184 cccaaataggaagagttttatattttgaagaaaaataaaccc 225  Q
    || |||  || || ||||||||||||||||||||||||||||    
T  27793671 cctaaacggggagggttttatattttgaagaaaaataaaccc 27793712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 20584841 - 20584807
Alignment:
Q  189 ataggaagagttttatattttgaagaaaaataaac 223  Q
    |||||||| ||||||||||||||||||||||||||    
T  20584841 ataggaagggttttatattttgaagaaaaataaac 20584807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 25073325 - 25073375
Alignment:
Q  198 gttttatattttgaagaaaaataaacccctatagccctctcctcccaatgt 248  Q
    ||||||||||||||||||||||||||||| | | ||| ||||| |||||||    
T  25073325 gttttatattttgaagaaaaataaacccccaaaaccccctccttccaatgt 25073375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 33212435 - 33212382
Alignment:
Q  86 attttaagaatattatgacgacat--attatatttgaagaattcatataaaccc 137  Q
    |||||||||||||||| || ||||  |||| |||||||||||||||||||||||    
T  33212435 attttaagaatattataacaacatgtattaaatttgaagaattcatataaaccc 33212382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 33590321 - 33590434
Alignment:
Q  110 attatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttttatatttt 209  Q
    |||| ||||||||||||||||| ||||| || |||   ||||||||||  ||  ||||||||||| ||||| |||||||||  | || ||||| |||| |    
T  33590321 attaaatttgaagaattcatattaaccctccaaaa---cccccaaaaccctcatccaatacaattttttagctccccaaatgaggagggttttgtattat 33590417  T
Q  210 gaagaaaaataaacccc 226  Q
    |||||||| | ||||||    
T  33590418 gaagaaaagttaacccc 33590434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 6688060 - 6688117
Alignment:
Q  144 aaaccccccaaaactttctaccaatacaattatttagttccccaaataggaagagttt 201  Q
    ||||||||||||||| ||  ||||||||||| |||||||||| ||||| | |||||||    
T  6688060 aaaccccccaaaactctcctccaatacaattttttagttccctaaataaggagagttt 6688117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 162 - 303
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  |||||||| ||||||  ||  ||||||||||| ||||||||    
T  162 attttaaaaatattataacaacatagattaaatttgaagaattcttattaaccctcc--aaaaccccgcaaaaccctcctccaatacaattttttagttc 259  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||| | || ||||| |||| ||||||||| | ||||||    
T  260 ctccaaataaggagggttttgtattatgaagaaaagttaacccc 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 35421 - 35525
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    |||||||||||||||| || |||||  ||  ||||||| ||||||||||||||| ||  | |||||||||||||  ||  ||||||||||| || |||||    
T  35421 attttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcc--ataaccccccaaaaccctcccccaatacaatttttgagttc 35518  T
Q  184 cccaaat 190  Q
    |||||||    
T  35519 cccaaat 35525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 9395 - 9475
Alignment:
Q  108 atattatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttccccaaat 190  Q
    |||||| ||||||||||||||||||||||| | |  ||| ||||||||||  ||  ||| ||||||| |||||||||||||||    
T  9395 atattaaatttgaagaattcatataaaccctctc--aaagcccccaaaaccctcctccagtacaattttttagttccccaaat 9475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 29359 - 29261
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| ||||||||||||| ||| ||||| ||  ||||||||||||| | |||  ||||||||||| ||||||||    
T  29359 attttaaaaatattataacaacataaattaaatttgaagaattcttattaaccctcc--aaaaccccccaaatccttcctccaatacaattttttagttc 29262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 93472 - 93613
Alignment:
Q  86 attttaagaatattatgacgacata--ttatatttgaagaattcatataaacccgcccaaaaaccccccaaaactttctaccaatacaattatttagttc 183  Q
    ||||||| |||||||| || |||||  ||| |||||||| |||| ||| ||||| |   |||||||||||||||  ||  ||||||||||| ||||||||    
T  93472 attttaaaaatattataacaacataaattaaatttgaagcattcttattaaccctcg--aaaaccccccaaaaccctcctccaatacaattttttagttc 93569  T
Q  184 c-ccaaataggaagagttttatattttgaagaaaaataaacccc 226  Q
    | ||||||  | |||||||| |||| ||||||||| | ||||||    
T  93570 ctccaaatgaggagagttttgtattatgaagaaaagttaacccc 93613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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