View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14255_high_6 (Length: 242)
Name: NF14255_high_6
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_high_6 |
 | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 16274624 - 16274845
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16274624 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
16274723 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16274724 |
gagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatctt |
16274823 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16274824 |
aaccatattcaaagtcacaaac |
16274845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 22825695 - 22825916
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22825695 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
22825794 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
22825795 |
gagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacatttgattttatctt |
22825894 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22825895 |
aaccatattcaaagtcacaaac |
22825916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 28320163 - 28319942
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28320163 |
attatattgatccaaacatacgactcaaa-aacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
28320065 |
T |
|
| Q |
108 |
gagtaaaaa-tagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatct |
206 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28320064 |
gagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatct |
28319965 |
T |
|
| Q |
207 |
taaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28319964 |
taaccatattcaaagtcacaaac |
28319942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 16273335 - 16273467
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
16273335 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
16273433 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
16273434 |
tgattttatcttaaccacattcaaagtcacaaac |
16273467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 28321446 - 28321314
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
28321446 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
28321348 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
28321347 |
tgattttatcttaaccacattcaaagtcacaaac |
28321314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 22824643 - 22824776
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaa-ttatattctcattaacaatcacaacttttagatcaatttaaacat |
194 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
22824643 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacat |
22824741 |
T |
|
| Q |
195 |
ttgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
22824742 |
ttgattttatcttaaccacattcaaagtcacaaac |
22824776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 29997285 - 29997506
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29997285 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
29997384 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29997385 |
gagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatctt |
29997484 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29997485 |
aaccatattcaaagtcacaaac |
29997506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 29995996 - 29996128
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
29995996 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
29996094 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
29996095 |
tgattttatcttaaccacattcaaagtcacaaac |
29996128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 42395924 - 42396145
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42395924 |
attatattgatccaaacatacgactcaaataacagatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
42396023 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42396024 |
gagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatctt |
42396123 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42396124 |
aaccatattcaaagtcacaaac |
42396145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 10023379 - 10023158
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
10023379 |
attatattgatccaaacatacgactcaaataaaaaatatttttcaatcaagtaaaaaacaagggcggttttcgatcacgaaaacatgacgtataagctaa |
10023280 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
10023279 |
gagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaagcatttgattttatctt |
10023180 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
10023179 |
aaccatagtcaaagtcacaaac |
10023158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 32969670 - 32969897
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
32969670 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgatgtataagctaa |
32969769 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttat------taattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattt |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32969770 |
gagtaaaaatagagtcctataactattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattt |
32969869 |
T |
|
| Q |
202 |
tatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32969870 |
tatcttaaccatattcaaagtcacaaac |
32969897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 10024493 - 10024361
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
10024493 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
10024395 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |
|
|
| T |
10024394 |
tgatttcatcttaaccacattcaaagtcacaaac |
10024361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 42394619 - 42394750
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
42394619 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
42394717 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaa |
228 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |
|
|
| T |
42394718 |
tgattttatcttaatcacattcaaagtcacaaa |
42394750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 32968067 - 32968199
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||| ||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
32968067 |
cgtataagttaagagtaaaaattgactcctaa-aattctattagatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
32968165 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |
|
|
| T |
32968166 |
tgattttatctcaaccacattcaaagtcacaaac |
32968199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 19045771 - 19045550
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19045771 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
19045672 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19045671 |
gagtaaaaatagagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatctt |
19045572 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19045571 |
aaccatattcaaagtcacaaac |
19045550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 39834632 - 39834853
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
39834632 |
attatattgatccaaacatacgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgatgtataagctaa |
39834731 |
T |
|
| Q |
108 |
gagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatctt |
207 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39834732 |
gagtaaaaatatagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatctt |
39834831 |
T |
|
| Q |
208 |
aaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39834832 |
aaccatattcaaagtcacaaac |
39834853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 19047057 - 19046925
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
19047057 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
19046959 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
19046958 |
tgattttatcttaaccacattcaaagtcacaaac |
19046925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 39833056 - 39833188
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
39833056 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
39833154 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
39833155 |
tgattttatcttaaccacattcaaagtcacaaac |
39833188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 26240015 - 26239883
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||| ||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
26240015 |
cgtataagttaaaagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
26239917 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||| |
|
|
| T |
26239916 |
tgatttaatattaaccacattcaaagtcacaaac |
26239883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 111269 - 111048
Alignment:
| Q |
8 |
attatactgatccaaacatatgactcaaataacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcatgaaaacgtgacgtataagctaa |
107 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
111269 |
attatattgatccaaacatacgactcaaa-aacaaatatttttcaatcaagtaaaaaacaaggggggttttcgatcacgaaaacgtgacgtataagctaa |
111171 |
T |
|
| Q |
108 |
gagtaaaaa-tagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatttgattttatct |
206 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
111170 |
gagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacatttgattttatct |
111071 |
T |
|
| Q |
207 |
taaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
111070 |
taaccatattcaaagtcacaaac |
111048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 112555 - 112423
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
112555 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
112457 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
112456 |
tgattttatcttaaccacattcaaagtcacaaac |
112423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 31973240 - 31973372
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatttaaacatt |
195 |
Q |
| |
|
|||||||| ||||||||||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
31973240 |
cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatt |
31973338 |
T |
|
| Q |
196 |
tgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
31973339 |
tgattttatcttaaccacattcaaagtcacaaac |
31973372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 41007 - 40874
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcat-taacaatcacaacttttagatcaatttaaacat |
194 |
Q |
| |
|
|||||||| ||||||| ||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
41007 |
cgtataagttaagagtcaaaatcgactcctaa-aattctattggatttgaataattatattttcaaataataatcacaacttttagatcaattcaaacat |
40909 |
T |
|
| Q |
195 |
ttgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
40908 |
ttgattttatcttaaccacattcaaagtcacaaac |
40874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 157778 - 157911
Alignment:
| Q |
96 |
cgtataagctaagagtaaaaatagagtcttattaattctattggatttgattaattatattctcat-taacaatcacaacttttagatcaatttaaacat |
194 |
Q |
| |
|
|||||||| ||||||| ||||| || || || ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
157778 |
cgtataagttaagagtcaaaatcgactcctaa-aattctattggatttgaataattatattttcaaataataatcacaacttttagatcaattcaaacat |
157876 |
T |
|
| Q |
195 |
ttgattttatcttaaccatattcaaagtcacaaac |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
157877 |
ttgattttatcttaaccacattcaaagtcacaaac |
157911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 7968145 - 7968206
Alignment:
| Q |
166 |
aatcacaacttttagatcaatttaaacatttga-ttttatcttaaccatattcaaagtcaca |
226 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
7968145 |
aatcacaacttttagatcaatagaagcatttgacttttatcttaaccacatttaaagtcaca |
7968206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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