View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14255_low_1 (Length: 506)
Name: NF14255_low_1
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 5173250 - 5173440
Alignment:
| Q |
12 |
cataggaacataggtgtctaccatgtgaggtggggatgatttcattagagaatctagtaaaagctacagagaatgctttttattttgtcgtcatttaatt |
111 |
Q |
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| T |
5173250 |
cataggaacataggtgtctaccatgtgaggtggggatgatttcatttgagaatctagtaaaagcaacagagaatgctttttattttgtcgtcatttaatt |
5173349 |
T |
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| Q |
112 |
ttgtgaagtccccctcgtcgtacatatatagatccgcgccgattcatatataattttatagggtttctgtcctaatgatatataccctccg |
202 |
Q |
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| T |
5173350 |
ttgtgaagtccccctcgtcgtacatatatagatccgcgccgattcatatataattttatagggtttctgtcgtaatgatatatacgctccg |
5173440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 351 - 506
Target Start/End: Original strand, 5173619 - 5173773
Alignment:
| Q |
351 |
taactctatttcaaaaataaacattactcacttggatccctccgtcaagacttgtttaatgacacggttaacaacaatgacatttagttaagtgattaag |
450 |
Q |
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| T |
5173619 |
taactctatttcaaaaataaacattactcacttggatccctccgtcaagacttgtttaatgacacggttaacaacaatgacatttagttaagtgattaag |
5173718 |
T |
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| Q |
451 |
ttggtccttgattttatcattcgctctnnnnnnntgattttgactattaacattgc |
506 |
Q |
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| T |
5173719 |
ttggtccttgattttatcattcgctct-aaaaaatgattttgactattaacattgc |
5173773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 5173503 - 5173591
Alignment:
| Q |
266 |
caaagatcatatacattgttaattgaatgaatgaatttaaaat-tagattttcatttatgatggttagcgaagagtgtacatatgttaa |
353 |
Q |
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| T |
5173503 |
caaagatcatatacattgttaattgaataaataaatttaaaatgtagatttttatttatgatagtaagcgaagagtatacacatgttaa |
5173591 |
T |
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