View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14255_low_2 (Length: 505)
Name: NF14255_low_2
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_low_2 |
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| [»] scaffold0179 (3 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 178 - 330
Target Start/End: Complemental strand, 5181 - 5032
Alignment:
| Q |
178 |
ggaacctgaattttcaagggagagagtgatatattattattacttgtggcataccacttaagacatcagaattcataccctcaaaataggtatcaatgag |
277 |
Q |
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| T |
5181 |
ggaacctgaattttcaagggagagagtgatatattatta---cttgtggcataccacttaagacatcagaatgcataccctcaaaataggtatcagtgag |
5085 |
T |
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| Q |
278 |
tggttgattccaacacggtttgataatcatgtaacacaaatttctcatcctgc |
330 |
Q |
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| T |
5084 |
tggttgattccaacacggtttgataatcatgtaacacaaatttctcatcctgc |
5032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 397 - 488
Target Start/End: Complemental strand, 4964 - 4873
Alignment:
| Q |
397 |
tcatagattgataagagatttaaagagagtctaccatgaccccgttttacagcggcaattttactttttagaaaaatgtgattgtgatatag |
488 |
Q |
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| T |
4964 |
tcatagattgataagagatttaaagatagtctaccatgaccccgttttacagcggcagttttactttttagaaaaatgtgattgtgatatag |
4873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 5372 - 5305
Alignment:
| Q |
45 |
cgcaaaaacacaaaactttctatataaatgcaaaccgcatacaattaacccataatcaaagacacaat |
112 |
Q |
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| T |
5372 |
cgcaaaaacaaaaaacattctatataaatgcaaactgcatacaattaactcataatcaaagacacaat |
5305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 895248 - 895366
Alignment:
| Q |
212 |
tattattacttgtggcataccacttaagacatcagaattcataccctcaaaataggtatcaatgagtggttgattccaacacggtttgataatcatgtaa |
311 |
Q |
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| T |
895248 |
tattattacttgtggcataccacttaagacatcagaatgcataccctcaaaataggtatcaatgagtggttgattccaacacggtttgataatcatgtaa |
895347 |
T |
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| Q |
312 |
cacaaatttctcatcctgc |
330 |
Q |
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| T |
895348 |
cacaaatttctcatcctgc |
895366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 894992 - 895103
Alignment:
| Q |
1 |
taaaagacatatggaaaatcgaaacttacatacatagagccatacgcaaaaacacaaaactttctatataaatgcaaaccgcatacaattaacccataat |
100 |
Q |
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| T |
894992 |
taaaagacatatgaaaaatcgaaacttacatacatagagccatacgcaaaaacacaaaactttctatataaatgcaaactgcatacaattaacccataat |
895091 |
T |
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| Q |
101 |
caaagacacaat |
112 |
Q |
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| T |
895092 |
caaagacacaat |
895103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 895433 - 895524
Alignment:
| Q |
397 |
tcatagattgataagagatttaaagagagtctaccatgaccccgttttacagcggcaattttactttttagaaaaatgtgattgtgatatag |
488 |
Q |
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| T |
895433 |
tcatagattgataagagatttaaagagtgtctaccatgaccccgttttacagcggaaattttactttttagaaaaatgtgattgtgatatag |
895524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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