View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14255_low_3 (Length: 502)
Name: NF14255_low_3
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 21641573 - 21641106
Alignment:
| Q |
17 |
atctaaccaaatttttcaatcactaatctttgagattgtaattgaaatccactagaagatgaatatagaaaactaaagaagaggatggtatcttgaaatt |
116 |
Q |
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| T |
21641573 |
atctaaccaaatttttcaatcactaatctttgagattgtaattgaaatccactagaagatgaatatagaaaactaaagaagaggatggtatcttgaaatt |
21641474 |
T |
|
| Q |
117 |
tgaagagtaacggtttgtgtgcccannnnnnnnnnnnnnnnnncaagtggaaaagtaggcacgaaa-ttataatgtatgtcacatgttctaaacgcgtta |
215 |
Q |
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| T |
21641473 |
tgaagagtaacggtttgtgtgcccaatatattatatatata--caagtggaaaagtaggcacgaaaattataatgtatgtcacatgttctaaacgcgtta |
21641376 |
T |
|
| Q |
216 |
ccttcacatatattttcccattggacccataagataccatattaaaagccaaatttgatgccatagaaaaaggttatgctgcgtttttggcacttcataa |
315 |
Q |
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| T |
21641375 |
ccttcacatatattttcccattggacccataagataccatattaaaagccaaatttgatgccatagaaaaaggttatgctgcgtttttggcacttcataa |
21641276 |
T |
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| Q |
316 |
ctcatattttttacccaaactataagttaagccttaaccaataatttcattattatattgtgattataatgttataaaatataaaataagaaaagaaaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21641275 |
ctcatattttttacccaaactataagttaagccttaaccaataatttcattattatattgtgattataattttataaaatataaaataagaaaagaaaag |
21641176 |
T |
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| Q |
416 |
catgatttaagggaattaagtcaaaaggcacaaacaaacacgagaaaataacatgggatggaatgaaatg |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21641175 |
catgatttaagggaattaagtcaaaaggcacaaacaaacacgagaaaataacatgggatggaatgaaatg |
21641106 |
T |
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