View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14255_low_4 (Length: 486)
Name: NF14255_low_4
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 24528862 - 24528574
Alignment:
| Q |
23 |
ttctccttaatgcttcgtaaatcctccatgaattttggacatttaacttgcatgcgaccaaactcttccgagcaatgacacttgacagtagtaaaatctt |
122 |
Q |
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| T |
24528862 |
ttctccttaatgcttcgtaaatcctccatgaattttgtacatttaacttgcatgcgaccaaactcttccgagcaatgacacttgacagtagtcaaatctt |
24528763 |
T |
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| Q |
123 |
tttgttaaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttcctagtattt-attttc-ttttgaagatttatgatcaccca |
220 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| |
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| T |
24528762 |
tttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactagtatttgattttctttttgaagatttatgatcaccca |
24528663 |
T |
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| Q |
221 |
tcatttgttaactcttctccaaggatctcaccacctcatctagttgcattgtattttttcatgctaacactgactgcacaaattgtata |
309 |
Q |
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| T |
24528662 |
tcatttgttgactattctccaaggatctcaccacctcgtctagttgcattgtattttttcatgctaacagtgactgcacaaattgtata |
24528574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 311 - 471
Target Start/End: Complemental strand, 24521172 - 24521012
Alignment:
| Q |
311 |
aagattatggtagtgaagctaacaaaagtaacatttactcttcatctttgatattgtcccttgcattcataagtctagataccaactcattaaacttact |
410 |
Q |
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| T |
24521172 |
aagattatggtagtgaagctaataaaagtaacatttactcttcacctttgatattgtcccttgcattcataagtctagataccaactcattaaacttact |
24521073 |
T |
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| Q |
411 |
aatatgatcaaacaaattaccttcatattccagctttaacgagtacaagctcattttcatc |
471 |
Q |
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| T |
24521072 |
aatatgatcaaacacattaccttcatcttccagctttaacgagtacaagctcattttcatc |
24521012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 39370675 - 39370741
Alignment:
| Q |
121 |
tttttgttaaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttcctagt |
187 |
Q |
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|||| ||| |||||| ||||||| |||||||||| |||||||||||| || ||| |||||| ||||| |
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| T |
39370675 |
ttttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
39370741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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