View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14255_low_5 (Length: 329)
Name: NF14255_low_5
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14255_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 128 - 311
Target Start/End: Original strand, 26142965 - 26143148
Alignment:
| Q |
128 |
acttttgagcttgtctataatttgtctttaaattaaaaatctgtaatttgcaattaaattattttaagctattaagtctcttttataaattttaaacttc |
227 |
Q |
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| T |
26142965 |
acttttgagcttgtctataatttgtctttaaattaaaaaactgtaatttgcaattaaattcttttaagctattaagtctcttttataaattttaaacttc |
26143064 |
T |
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| Q |
228 |
aaagatgcaattaaatttttagtggcaagaattcaattacaattattaacttggcttgggagttgggaccatggagtgtgctct |
311 |
Q |
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| T |
26143065 |
aaagatgcaattaaatttttagtggcaagaattcaattacaattattaacttggcttgggagttaggaccttggagtgtgctct |
26143148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 26142504 - 26142621
Alignment:
| Q |
10 |
aaggctgaggaaattatatttgtaaaattagagatgttcgagtcagttgatggagaattattctttagggcgcaatggtattaccgagcgaagggcactc |
109 |
Q |
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| T |
26142504 |
aaggcggagggaattatatttgtaaaattagagatgttcgagtcagttgatggagaattattctttagggcgcaatggtattaccgagcgaaggacactg |
26142603 |
T |
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| Q |
110 |
taagttaacgctaatgac |
127 |
Q |
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| T |
26142604 |
taagttaacgctaatgac |
26142621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 31490743 - 31490840
Alignment:
| Q |
23 |
ttatatttgtaaaatta--gagatgttcgagtcagttgatggagaattattctttagggcgcaatggtattaccgagcgaagggcactctaagttaac |
118 |
Q |
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| T |
31490743 |
ttatatttgtaaaattatagagatgttcaagtcagttgatggagaattgttctttagggcgcaatggcaataccgagctaaggacactataagttaac |
31490840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 31490643 - 31490730
Alignment:
| Q |
23 |
ttatatttgtaaaatta--gagatgttcgagtcagttgatggagaattattctttagggcgcaatggtattaccgagcgaagggcact |
108 |
Q |
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| T |
31490643 |
ttatatttgtaaaattatagagatgttcgaatcagttgatggagaattgttctttagggcgcaatgctattaccgagctaaggacact |
31490730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 31492458 - 31492352
Alignment:
| Q |
196 |
ctattaagtctcttttataaattttaaacttcaaagatgcaattaaatttttagtggcaagaattcaattacaattattaacttggcttgggagttggga |
295 |
Q |
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| T |
31492458 |
ctattgagtctcttttataaattttaaactccaacgatgcaattaaatttttagctgcaataattca---------attaacctggcttgggagttggga |
31492368 |
T |
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| Q |
296 |
ccatggagtgtgctct |
311 |
Q |
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|| |||| |||||||| |
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| T |
31492367 |
ccttggaatgtgctct |
31492352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 31490848 - 31490908
Alignment:
| Q |
251 |
ggcaagaattcaattacaattattaacttggcttgggagttgggaccatggagtgtgctct |
311 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||| |
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| T |
31490848 |
ggcaagaattcaattacaattattaacttggtttgggagttgggaccttagactgtgctct |
31490908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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