View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14255_low_6 (Length: 315)

Name: NF14255_low_6
Description: NF14255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14255_low_6
NF14255_low_6
[»] chr1 (17 HSPs)
chr1 (19-299)||(3608027-3608306)
chr1 (223-307)||(51157488-51157572)
chr1 (222-309)||(7371933-7372019)
chr1 (222-306)||(26501295-26501378)
chr1 (222-307)||(11097871-11097955)
chr1 (222-307)||(29489346-29489430)
chr1 (222-267)||(32873341-32873386)
chr1 (222-266)||(26585200-26585244)
chr1 (226-314)||(33660045-33660132)
chr1 (219-307)||(34395906-34395993)
chr1 (222-276)||(7078516-7078571)
chr1 (222-276)||(27352630-27352685)
chr1 (222-307)||(36669357-36669441)
chr1 (222-307)||(9011645-9011729)
chr1 (222-307)||(42256460-42256544)
chr1 (222-307)||(43457806-43457890)
chr1 (222-306)||(51193119-51193202)
[»] chr4 (9 HSPs)
chr4 (219-307)||(40721951-40722038)
chr4 (222-307)||(44170606-44170690)
chr4 (222-279)||(1796366-1796422)
chr4 (222-279)||(7037499-7037555)
chr4 (222-307)||(13267465-13267549)
chr4 (222-307)||(40258205-40258289)
chr4 (222-262)||(31995947-31995987)
chr4 (222-266)||(41609706-41609750)
chr4 (222-266)||(45521606-45521650)
[»] chr7 (7 HSPs)
chr7 (222-307)||(29763830-29763914)
chr7 (220-266)||(7807053-7807099)
chr7 (222-307)||(30864404-30864488)
chr7 (222-307)||(33050183-33050267)
chr7 (220-269)||(42431721-42431770)
chr7 (222-307)||(44175545-44175629)
chr7 (222-266)||(25614848-25614892)
[»] chr5 (9 HSPs)
chr5 (222-276)||(30420626-30420681)
chr5 (222-307)||(38010872-38010956)
chr5 (222-307)||(3263495-3263579)
chr5 (222-307)||(9594478-9594562)
chr5 (222-255)||(10232499-10232532)
chr5 (222-286)||(18511803-18511867)
chr5 (221-266)||(28501591-28501636)
chr5 (225-269)||(11464146-11464190)
chr5 (222-266)||(35814453-35814497)
[»] chr8 (9 HSPs)
chr8 (225-307)||(14228710-14228791)
chr8 (222-307)||(10344324-10344408)
chr8 (222-307)||(30927918-30928002)
chr8 (222-307)||(37784361-37784445)
chr8 (222-276)||(40380281-40380336)
chr8 (222-300)||(5924810-5924887)
chr8 (221-266)||(9314410-9314455)
chr8 (224-276)||(43186298-43186351)
chr8 (222-266)||(14531621-14531665)
[»] chr6 (3 HSPs)
chr6 (223-304)||(7577176-7577256)
chr6 (222-276)||(3339515-3339570)
chr6 (223-307)||(12501475-12501558)
[»] chr3 (15 HSPs)
chr3 (222-307)||(11327108-11327192)
chr3 (222-276)||(2482690-2482745)
chr3 (222-276)||(30400172-30400227)
chr3 (222-276)||(50025714-50025769)
chr3 (219-285)||(22371188-22371254)
chr3 (221-276)||(3347137-3347194)
chr3 (222-263)||(20549415-20549456)
chr3 (220-276)||(37754445-37754502)
chr3 (222-279)||(38944156-38944212)
chr3 (222-307)||(46344414-46344498)
chr3 (219-279)||(48205042-48205101)
chr3 (222-266)||(1295332-1295376)
chr3 (222-266)||(1402650-1402694)
chr3 (223-263)||(39697252-39697292)
chr3 (220-260)||(51672861-51672901)
[»] chr2 (13 HSPs)
chr2 (222-307)||(1298194-1298278)
chr2 (222-288)||(13553147-13553212)
chr2 (222-275)||(29893610-29893664)
chr2 (222-279)||(3091741-3091797)
chr2 (222-307)||(6884910-6884994)
chr2 (222-263)||(18508078-18508119)
chr2 (222-307)||(34144538-34144622)
chr2 (222-315)||(35171205-35171297)
chr2 (222-307)||(36383462-36383546)
chr2 (222-307)||(36909830-36909914)
chr2 (222-307)||(44484643-44484727)
chr2 (220-260)||(39247496-39247536)
chr2 (222-266)||(40371119-40371163)
[»] scaffold0522 (1 HSPs)
scaffold0522 (222-276)||(2520-2575)
[»] scaffold0011 (1 HSPs)
scaffold0011 (222-276)||(18595-18650)
[»] scaffold0016 (1 HSPs)
scaffold0016 (222-266)||(204472-204516)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 3608306 - 3608027
Alignment:
Q  19 cagagcatgtgcatgatatctggacttaaaatagataaagcatgtgaattcgatgaatattttatgatggtagtgacaacaatcaacattaatacaggtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3608306 cagagcatgtgcatgatatctggacttaaaatagataaagcatgtgaattcgatgaatattttatgatggtagtgacaacaatcaacattaatacaggtg 3608207  T
Q  119 ccaattggtgccgacaataaccatacgtggcaattaactccattgtgtcaaatggaaaaaacctccttagaaaatgattaagtctaatttctannnnnnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  3608206 ccaattggtgccgacaataaccatacgtggcaattaactccattgtgtcaaatggaaaaaacctccttagaaaatgattaagtctaatttctattttttt 3608107  T
Q  219 aaggagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttatttt 299  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||    
T  3608106 aaggataaatgatatttgtacatcaattttgtgataaattttgtataattt-tctctctcacactcagatgatgttatttt 3608027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 51157488 - 51157572
Alignment:
Q  223 agaaatgatatttgtacatcaattttgtgataa-attttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||| | |||||||| ||||||||||||    
T  51157488 agaaattatatttgtacatcaattttgtgataactttttgtacaattt-tctttctcacactcacatgatgttcttttcctctctc 51157572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 7372019 - 7371933
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctcct 309  Q
    ||||||||||||||||||| | | ||| ||| || ||||||||||||| ||||||||| |||||||||||| | || |||||||||||    
T  7372019 gagaaatgatatttgtacaactaatttatgacaatttttgtacaattt-tctctctcatacttatatgatggtcttatcctctctcct 7371933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 26501295 - 26501378
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctct 306  Q
    ||||||||||||||||||| | ||||||| |||| ||||| |||| || ||||||||| ||||| |||||||| || ||||||||    
T  26501295 gagaaatgatatttgtacaaccattttgtaataacttttggacaactt-tctctctcatacttacatgatgttcttatcctctct 26501378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 11097955 - 11097871
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||||| ||||||||| || ||||| |||| || ||||||||| ||| | || || || ||||||||||||    
T  11097955 gagaaatgatatttgtacatccattttgtgacaacttttgaacaactt-tctctctcatactcacataatattcttttcctctctc 11097871  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 29489430 - 29489346
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | |||||||||||| ||| |||||| || ||||||||| ||| | |||||| | || |||||||||    
T  29489430 gagaaatgatatttgtacaaccattttgtgataactttggtacaactt-tctctctcatactcacatgatggtcttatcctctctc 29489346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 32873341 - 32873386
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaat 267  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  32873341 gagaaatgatatttgtacatccattttatgataacttttgtacaat 32873386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 26585244 - 26585200
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||    
T  26585244 gagaaatgatatttgtacaactattttgtgataacttttgtacaa 26585200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 33660045 - 33660132
Alignment:
Q  226 aatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctccttattt 314  Q
    ||||||||||||||||  ||||| | |||| ||||| | ||||| ||||| ||| ||| | |||||| |||||||||||||||||||||    
T  33660045 aatgatatttgtacattcattttataataatttttggataattt-tctctttcatactcacatgatgctattttcctctctccttattt 33660132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 34395993 - 34395906
Alignment:
Q  219 aaggagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||| |||||||||||||||||| ||||| ||| || ||||| |||| || ||||||||| ||| | || || |||||||||||||||    
T  34395993 aaggataaatgatatttgtacatctattttatgacaacttttgaacaactt-tctctctcatactcacataatattattttcctctctc 34395906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 7078571 - 7078516
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||||| ||||||||| || ||||| |||| ||||||||||    
T  7078571 gagaaatgatatttgtacatctattttgtgacaacttttgaacaactttctctctc 7078516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 27352630 - 27352685
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||| | |||||||||||| ||||| |||| ||||||||||    
T  27352630 gagaaatgatatttgtacaaccattttgtgataacttttggacaactttctctctc 27352685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 36669441 - 36669357
Alignment:
Q  222 gagaaatgatatttgtac-atcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| || | ||||||| ||| | |||||||| || |||||||||    
T  36669441 gagaaatgatatttgtacaatcaa-tttgtgataatttttgtacaactt-tttctctcatactcacatgatgtttttatcctctctc 36669357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 9011645 - 9011729
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| || |||  ||||| || ||||||||| | |||||||||| | || |||||||||    
T  9011645 gagaaatgatatttgtacaaccattttgtgacaactttgatacaactt-tctctctcatatttatatgatggtcttatcctctctc 9011729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 42256460 - 42256544
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| || ||| |||||| || ||||||||| ||| | |||||| | || |||||||||    
T  42256460 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactt-tctctctcatactcacatgatggtcttatcctctctc 42256544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 43457890 - 43457806
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | |||||| ||||| ||||| |||| || ||||||||| | |   || ||||||||||||||||||    
T  43457890 gagaaatgatatttgtacaaccattttgcgataacttttggacaactt-tctctctcatattctcattatgttattttcctctctc 43457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 51193202 - 51193119
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctct 306  Q
    ||||||||||||||||||||| ||||| | | || ||||| |||| || ||||||||| ||| | |||||| | |||||||||||    
T  51193202 gagaaatgatatttgtacatccattttataacaatttttggacaactt-tctctctcatactcacatgatgctcttttcctctct 51193119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 40722038 - 40721951
Alignment:
Q  219 aaggagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||||||||||||| ||||| | |||| ||||| |||| || ||||||||| ||| | |||||||| ||||||||||||    
T  40722038 aaggagaaatgatatttgtacatccattttataataatttttggacaactt-tctctctcatactcacatgatgttcttttcctctctc 40721951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 44170690 - 44170606
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||| |||| ||||  |||| || |||||| || ||||||||||||||||| |||||||||    
T  44170690 gagaaatgatatttgtacaaccattttgttataattttttgacaactt-tctctcacatacttatatgatgttattatcctctctc 44170606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 1796366 - 1796422
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctca 279  Q
    ||||||||||||||||||| | | ||||||| || ||||||||||||| |||||||||    
T  1796366 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattt-tctctctca 1796422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 7037555 - 7037499
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctca 279  Q
    ||||||||||||||||||| | | ||||||| || ||||||||||||| |||||||||    
T  7037555 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattt-tctctctca 7037499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 13267549 - 13267465
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| |||||||| | || || |||||| || ||| | ||||| || ||||||||||||    
T  13267549 gagaaatgatatttgtacaaccattttgtgacaaattttggaaaactt-tctctcacatactcacatgattttcttttcctctctc 13267465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 40258205 - 40258289
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||| |||| | ||||| |||||| ||||| | || || ||||||||| |||||||||||||| || || ||||||    
T  40258205 gagaaatgatatttatacaaccattttatgataatttttgaataactt-tctctctcatacttatatgatgttgttatcttctctc 40258289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 31995987 - 31995947
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgt 262  Q
    ||||||||||||||||||| | ||||| |||||||||||||    
T  31995987 gagaaatgatatttgtacaactattttttgataaattttgt 31995947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 41609750 - 41609706
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| ||||| ||| || ||||||||||    
T  41609750 gagaaatgatatttgtacatccattttatgacaacttttgtacaa 41609706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 45521650 - 45521606
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| ||||| ||| || ||||||||||    
T  45521650 gagaaatgatatttgtacatccattttatgacaacttttgtacaa 45521606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 29763830 - 29763914
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | |||||||||||| |||||||||| || ||| ||||| ||| |||||||||| |  |||||||||    
T  29763830 gagaaatgatatttgtacaaccattttgtgataacttttgtacaactt-tctttctcatactcatatgatgttttcatcctctctc 29763914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 7807053 - 7807099
Alignment:
Q  220 aggagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||    
T  7807053 aggagaaatgatatttgtacacccattttgtgataaattttttacaa 7807099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 30864488 - 30864404
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||||| || |||||||||| || ||||||||| ||| |||||||| | || |||||||||    
T  30864488 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactt-tctctctcatactcatatgatggtcttatcctctctc 30864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 33050183 - 33050267
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| || |||||||||| || ||||||||| ||| | |||||| | || |||||||||    
T  33050183 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactt-tctctctcatactcacatgatggtcttatcctctctc 33050267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 42431721 - 42431770
Alignment:
Q  220 aggagaaatgatatttgtacatcaattttgtgataaattttgtacaattt 269  Q
    |||||||||||||||| |||| | | |||||||||| |||||||||||||    
T  42431721 aggagaaatgatatttatacacctaatttgtgataacttttgtacaattt 42431770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 44175545 - 44175629
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||| |||||||||||   |||||||||||| |||||||||| || ||||||||| ||| | |||||| | ||||| ||||||    
T  44175545 gagaaataatatttgtacaatcattttgtgataacttttgtacaactt-tctctctcatactcacatgatggttttttcatctctc 44175629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 25614892 - 25614848
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| ||||| |||||| ||||| ||||    
T  25614892 gagaaatgatatttgtacatccattttttgataacttttgcacaa 25614848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 30420626 - 30420681
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaat-ttctctctc 276  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||    
T  30420626 gagaaatgatatttgtacatccattttatgataatttttgtacaatcttctctctc 30420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 38010872 - 38010956
Alignment:
Q  222 gagaaatgatatttgtac-atcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||| ||| | |||||| | || |||||||||    
T  38010872 gagaaatgatatttgtacaatcaa-tttgtgataacttttgtacaattt-tctctctcatactcacatgatggtcttatcctctctc 38010956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 3263579 - 3263495
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||||| || ||||||||||||| | ||||||| ||| | |||||| | || |||||||||    
T  3263579 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattt-tttctctcatactcacatgatggtcttatcctctctc 3263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 9594478 - 9594562
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||||| || |||||||||| || ||||||||| ||| | |||||| | || |||||||||    
T  9594478 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactt-tctctctcatactcacatgatggtcttatcctctctc 9594562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 10232499 - 10232532
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataa 255  Q
    ||||||||||||||||||||||| ||||||||||    
T  10232499 gagaaatgatatttgtacatcaactttgtgataa 10232532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 18511867 - 18511803
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttg-tacaatttctctctctcacacttat 286  Q
    ||||||||||||||| ||||  |||||||||||| ||||| |||||||| ||||||||| ||||||    
T  18511867 gagaaatgatatttgaacattcattttgtgataatttttgctacaattt-tctctctcatacttat 18511803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 28501591 - 28501636
Alignment:
Q  221 ggagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    |||||||||||||||||||| | ||||||||| || ||||||||||    
T  28501591 ggagaaatgatatttgtacaaccattttgtgacaatttttgtacaa 28501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 11464190 - 11464146
Alignment:
Q  225 aaatgatatttgtacatcaattttgtgataaattttgtacaattt 269  Q
    |||||||||||||||| | | |||||||||| |||||||||||||    
T  11464190 aaatgatatttgtacaaccaatttgtgataacttttgtacaattt 11464146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 35814453 - 35814497
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||| | |||||||||||| ||| ||||||    
T  35814453 gagaaatgatatttgtacaaccattttgtgataactttggtacaa 35814497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 14228710 - 14228791
Alignment:
Q  225 aaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||||| | |||||||||||| |||||||||| || ||||||||| ||| | |||||||| || | |||||||    
T  14228710 aaatgatatttgtacaactattttgtgataacttttgtacaactt-tctctctcatactcacatgatgttcttattctctctc 14228791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 10344324 - 10344408
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||||| ||||| | |||| ||||| |||| || ||||||||| ||| | |||||| | ||||||||||||    
T  10344324 gagaaatgatatttgtacatctattttataataatttttggacaactt-tctctctcatactcacatgatgctcttttcctctctc 10344408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 30928002 - 30927918
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||||| || |||||||||| || ||||||||| ||| |||||||| | || |||||||||    
T  30928002 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactt-tctctctcatactcatatgatggtcttatcctctctc 30927918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 37784445 - 37784361
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||  |||| ||||||||||||| ||||||||| ||| |||| ||||| || | |||||||    
T  37784445 gagaaatgatatttgtacaaccattttggtataacttttgtacaattt-tctctctcatactcatattatgtttttattctctctc 37784361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 40380281 - 40380336
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||||| ||||| ||| || |||||||||| ||||||||||    
T  40380281 gagaaatgatatttgtacatctattttatgacaacttttgtacaactttctctctc 40380336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 5924810 - 5924887
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttc 300  Q
    ||||||||||||| ||||||| ||||| | |||| |||||||||| || ||||||||| ||| | |||||||| |||||    
T  5924810 gagaaatgatattcgtacatctattttataataatttttgtacaactt-tctctctcatactcacatgatgttcttttc 5924887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 9314410 - 9314455
Alignment:
Q  221 ggagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||    
T  9314410 ggagaaatgatatttgtacatccattttatgacaatttttgtacaa 9314455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 43186298 - 43186351
Alignment:
Q  224 gaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    |||||||||||||||||   |||||||||||| |||||||||| ||||||||||    
T  43186298 gaaatgatatttgtacaattattttgtgataatttttgtacaactttctctctc 43186351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 14531621 - 14531665
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||| | ||||| |||||| ||||||||||    
T  14531621 gagaaatgatatttgtacaactattttatgataacttttgtacaa 14531665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 7577256 - 7577176
Alignment:
Q  223 agaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctct 304  Q
    |||||||||||||||||||| ||||| | |||| ||||| | |||||  |||||||| ||| |||||||||| |||||||||    
T  7577256 agaaatgatatttgtacatctattttataataatttttggataattt-actctctcatactcatatgatgtttttttcctct 7577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 3339570 - 3339515
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||| | ||||||||| || |||||||||| ||||||||||    
T  3339570 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctc 3339515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 12501475 - 12501558
Alignment:
Q  223 agaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||   ||||||||| || ||||  |||| || |||||| || |||||||||||||| ||||| ||||||    
T  12501475 agaaatgatatttgtacaattattttgtgacaatttttaaacaactt-tctctcacatacttatatgatgttcttttcatctctc 12501558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 11327108 - 11327192
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| || |||||||||| || ||||||||| ||| | |||||| | || |||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactt-tctctctcatactcacatgatggtcttatcctctctc 11327192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 2482745 - 2482690
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||||| ||||||||| || ||||| |||| ||||||||||    
T  2482745 gagaaatgatatttgtacatccattttgtgacaacttttgaacaactttctctctc 2482690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 30400227 - 30400172
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||| ||||||||||    
T  30400227 gagaaatgatatttgtacaacaaatttgtgacaacttttgtacaactttctctctc 30400172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 50025769 - 50025714
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||| ||||||||||    
T  50025769 gagaaatgatatttgtacaaccattttggtataaattttgtacaactttctctctc 50025714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 22371188 - 22371254
Alignment:
Q  219 aaggagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacactta 285  Q
    |||||||||||||||||| ||||| |||| ||||||| |||||||  | || ||||||||| |||||    
T  22371188 aaggagaaatgatatttgaacatccatttagtgataacttttgtaataattttctctctcatactta 22371254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 3347194 - 3347137
Alignment:
Q  221 ggagaaatgatatttgtacatcaattttgtgataaattttg-tacaa-tttctctctc 276  Q
    |||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||||    
T  3347194 ggagaaatgatatttgaacatccattttgtgataacttttgctacaactttctctctc 3347137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 20549456 - 20549415
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgta 263  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  20549456 gagaaatgatatttgtacatctattttatgataatttttgta 20549415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 37754445 - 37754502
Alignment:
Q  220 aggagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||||||| ||||| | |||| ||||| |||| ||||||||||    
T  37754445 aggagaaatgatatttgtacatctattttataataatttttggacaactttctctctc 37754502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 38944212 - 38944156
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctca 279  Q
    ||||||||||||||||||| | | ||||||| || ||||||||||||| |||||||||    
T  38944212 gagaaatgatatttgtacaactaatttgtgacaacttttgtacaattt-tctctctca 38944156  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 46344414 - 46344498
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||| | || ||||||||||||| ||||||||| | | |||||||| | || |||||||||    
T  46344414 gagaaatgatatttgtacaactaatttgttacaatttttgtacaattt-tctctctcatattcatatgatggtcttatcctctctc 46344498  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 48205042 - 48205101
Alignment:
Q  219 aaggagaaatgatatttgtac-atcaattttgtgataaattttgtacaatttctctctctca 279  Q
    ||||||||||||||||||||| |||| |||||| |||| ||||||||||||| |||||||||    
T  48205042 aaggagaaatgatatttgtacaatcatttttgt-ataatttttgtacaattt-tctctctca 48205101  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 1295332 - 1295376
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||    
T  1295332 gagaaatgatatttgtacaactattttgtgataacttttggacaa 1295376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 1402650 - 1402694
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| ||||| ||| || ||||||||||    
T  1402650 gagaaatgatatttgtacatccattttatgacaacttttgtacaa 1402694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 39697292 - 39697252
Alignment:
Q  223 agaaatgatatttgtacatcaattttgtgataaattttgta 263  Q
    |||||||||||||| ||||| |||||||||||| |||||||    
T  39697292 agaaatgatatttgaacatccattttgtgataatttttgta 39697252  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 51672861 - 51672901
Alignment:
Q  220 aggagaaatgatatttgtacatcaattttgtgataaatttt 260  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  51672861 aggagaaatgatatttgtacatctactttgtgataactttt 51672901  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 1298194 - 1298278
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||| | | ||||||  |||| ||||  ||||||| ||||||||| ||||||||||||||||| ||| |||||    
T  1298194 gagaaatgatatttgtagaaccattttgctataattttttgacaattt-tctctctcatacttatatgatgttattatcccctctc 1298278  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 13553147 - 13553212
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatat 288  Q
    ||||||||||||||||||| | | |||||||||| ||||| ||||||| ||||||||| ||| ||||    
T  13553147 gagaaatgatatttgtacaaccactttgtgataatttttggacaattt-tctctctcatactcatat 13553212  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 29893610 - 29893664
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctct 275  Q
    ||||||||||||||||||| | | |||||||||| |||||||||| |||||||||    
T  29893610 gagaaatgatatttgtacaactaatttgtgataacttttgtacaactttctctct 29893664  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 3091741 - 3091797
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctca 279  Q
    ||||||||||||||||||| | |||||||||||| ||||  ||||||| |||||||||    
T  3091741 gagaaatgatatttgtacaactattttgtgataactttttgacaattt-tctctctca 3091797  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 6884910 - 6884994
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | |||||||||| |||| ||||| || ||||||||| ||| | |||||| | || |||||||||    
T  6884910 gagaaatgatatttgtacaactaatttgtgataacttttatacaactt-tctctctcatactcacatgatggtcttatcctctctc 6884994  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 18508078 - 18508119
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgta 263  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  18508078 gagaaatgatatttgtacatccattttatgataacttttgta 18508119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 34144622 - 34144538
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | | ||||||| || |||||||||| || ||||||||| ||| | |||||| | || |||||||||    
T  34144622 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactt-tctctctcatactcacatgatggtcttatcctctctc 34144538  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 35171297 - 35171205
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctccttatttt 315  Q
    ||||||||||||||||||| | ||||||||| || ||| |||||| || ||||||||| ||| | |||||| | || || |||||| |||||||    
T  35171297 gagaaatgatatttgtacaaccattttgtgacaattttggtacaactt-tctctctcatactcacatgatggtcttatcatctctctttatttt 35171205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 36383462 - 36383546
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    |||||||||||||||||||   ||||||||| || |||||||||| || ||||||||| ||| | |||||||| || || ||||||    
T  36383462 gagaaatgatatttgtacaaagattttgtgacaacttttgtacaactt-tctctctcatactcacatgatgttcttatcatctctc 36383546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 36909914 - 36909830
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||||| || ||||| |||| || |||||| || ||| | ||||| || ||||||||||||    
T  36909914 gagaaatgatatttgtacaaccattttgtgacaacttttggacaactt-tctctcacatactcacatgattttcttttcctctctc 36909830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 44484727 - 44484643
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaatttctctctctcacacttatatgatgttattttcctctctc 307  Q
    ||||||||||||||||||| | ||||||| | || |||||||||| || ||||||||| ||| | |||||||| || || ||||||    
T  44484727 gagaaatgatatttgtacaaccattttgtaacaatttttgtacaactt-tctctctcatactcacatgatgttcttatcatctctc 44484643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 39247536 - 39247496
Alignment:
Q  220 aggagaaatgatatttgtacatcaattttgtgataaatttt 260  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  39247536 aggagaaatgatatttgtacaaccattttgtgataactttt 39247496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 40371119 - 40371163
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    |||||||| |||||||||||| ||||| |||||| ||||||||||    
T  40371119 gagaaatgttatttgtacatctattttatgataatttttgtacaa 40371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 2575 - 2520
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||||| ||| |||||||| ||||| |||| ||||||||||    
T  2575 gagaaatgatatttgtacatctattatgtgataatttttggacaactttctctctc 2520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 18595 - 18650
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa-tttctctctc 276  Q
    ||||||||||||||||||| | | |||||||||| |||||||||| ||||||||||    
T  18595 gagaaatgatatttgtacaaccaatttgtgataacttttgtacaactttctctctc 18650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 204516 - 204472
Alignment:
Q  222 gagaaatgatatttgtacatcaattttgtgataaattttgtacaa 266  Q
    ||||||||||||||||||||| ||||| ||| || ||||||||||    
T  204516 gagaaatgatatttgtacatctattttctgacaacttttgtacaa 204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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