View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14256_high_4 (Length: 277)
Name: NF14256_high_4
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14256_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 46914026 - 46913879
Alignment:
| Q |
104 |
taagtagatcgatccaattcaacatacttgattatatataaatgtcagacaaataaacaccatttgctactgctaccaagctctcgtagttttagtggca |
203 |
Q |
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| T |
46914026 |
taagtagatcaatccaattcaatatgcttgattatatataaatgtcagacagagaaacaccatttgatgttgctaccaagctatcgtagttttagtggca |
46913927 |
T |
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| Q |
204 |
aacttaatggactgttcttcttcgtattacgtcatgatagtgtgtatttag |
254 |
Q |
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| T |
46913926 |
aacttaatggactgtt---cttcgtattacgtcatgatagtgtgtatttag |
46913879 |
T |
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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 5337845 - 5337693
Alignment:
| Q |
104 |
taagtagatcgatccaattcaacatacttgattatatataaatgtcagacaaataaacaccatttgctactgctaccaagctctcgtagttttagtggca |
203 |
Q |
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| T |
5337845 |
taagtagatcaatccaattcaatatacttgattagcaactaatgtctgacaaataaacaccatttgctactaataccaagctatcgtagttttagtggca |
5337746 |
T |
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| Q |
204 |
aacttaatggactgttcttcttcgtattacgtcatgatagtgtgtatttagtggt |
258 |
Q |
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| T |
5337745 |
aacttaatggattgt--tttttcgtattacgtcatgatagtgtgtctttagtggt |
5337693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5340474 - 5340414
Alignment:
| Q |
19 |
aattaactgatatatgtctctcacacgggtaag-aaagataaaatcaagctaccaaagaca |
78 |
Q |
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| T |
5340474 |
aattaactgatatatgtctctaacacggataagaaaagataaaatcaaactacctaagaca |
5340414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35751813 - 35751728
Alignment:
| Q |
1 |
ttgggccctatgatactgaattaactgatatatgtctctcacacgggtaagaaagataaaatcaagctaccaaagacaagacacac |
86 |
Q |
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| T |
35751813 |
ttgggccctatgatactgaattaactgatatatgtctctcacacgggtaagaaagataaaatcaagctaccgaagacaagacacac |
35751728 |
T |
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