View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14256_low_1 (Length: 587)
Name: NF14256_low_1
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14256_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 42784219 - 42784086
Alignment:
| Q |
5 |
gaagaaaatggaaagtgagagaagaattagccttggtccacttnnnnnnn--tcttgattagcaagtttaccattttacccttcaaaggaaaagacataa |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| || |
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| T |
42784219 |
gaagaatatggaaagtgagagaagaattagccttggtccacttaaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaa |
42784120 |
T |
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| Q |
103 |
ttatcctttgttaatttgtaaccctttaattcct |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42784119 |
ttatcctttgttaatttgtaaccctttaattcct |
42784086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 48479731 - 48479808
Alignment:
| Q |
60 |
attagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
137 |
Q |
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|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48479731 |
attagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
48479808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 5595154 - 5595287
Alignment:
| Q |
5 |
gaagaaaatggaaagtgagagaagaattagccttggtccacttnnnnnnn-tcttgattagcaagtttaccattttacccttcaaaggaaaagacataat |
103 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
5595154 |
gaagaatatggaaagtgagagaagaattagctttggtccacttaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaat |
5595253 |
T |
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| Q |
104 |
tatcctttgttaatttgtaaccctttaattcctc |
137 |
Q |
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| T |
5595254 |
tatcctttgttaatttgtaaccctttaattcctc |
5595287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 5601347 - 5601480
Alignment:
| Q |
5 |
gaagaaaatggaaagtgagagaagaattagccttggtccacttnnnnnnn-tcttgattagcaagtttaccattttacccttcaaaggaaaagacataat |
103 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
5601347 |
gaagaatatggaaagtgagagaagaattagctttggtccacttaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaat |
5601446 |
T |
|
| Q |
104 |
tatcctttgttaatttgtaaccctttaattcctc |
137 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5601447 |
tatcctttgttaatttgtaaccctttaattcctc |
5601480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 2893472 - 2893337
Alignment:
| Q |
5 |
gaagaaaatggaaagtgagagaagaattagccttggtccacttnnnnnnn---tcttgattagcaagtttaccattttacccttcaaaggaaaagacata |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| | |
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| T |
2893472 |
gaagaatatggaaagtgagagaagaattagccttggtccacttaaaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacaca |
2893373 |
T |
|
| Q |
102 |
attatcctttgttaatttgtaaccctttaattcctc |
137 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
2893372 |
attatcctttgttaatttgtaactctttaattcctc |
2893337 |
T |
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