View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14256_low_2 (Length: 487)

Name: NF14256_low_2
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14256_low_2
NF14256_low_2
[»] chr1 (7 HSPs)
chr1 (23-487)||(10302777-10303245)
chr1 (393-437)||(36982392-36982436)
chr1 (349-437)||(24801371-24801462)
chr1 (390-462)||(35692519-35692591)
chr1 (393-437)||(7242867-7242911)
chr1 (380-456)||(13546450-13546526)
chr1 (383-435)||(25086078-25086130)
[»] chr7 (5 HSPs)
chr7 (349-481)||(8839297-8839432)
chr7 (349-481)||(13254117-13254252)
chr7 (392-438)||(31717924-31717970)
chr7 (393-437)||(28537427-28537471)
chr7 (386-431)||(24172237-24172282)
[»] chr8 (7 HSPs)
chr8 (393-456)||(8878136-8878199)
chr8 (386-483)||(15682959-15683056)
chr8 (386-437)||(30936034-30936085)
chr8 (351-438)||(27121809-27121899)
chr8 (404-437)||(8034189-8034222)
chr8 (386-431)||(36994566-36994611)
chr8 (397-437)||(4321564-4321604)
[»] chr3 (3 HSPs)
chr3 (386-481)||(40294642-40294737)
chr3 (349-437)||(22288225-22288316)
chr3 (393-429)||(9651087-9651123)
[»] chr6 (10 HSPs)
chr6 (387-472)||(21910236-21910321)
chr6 (386-481)||(12411178-12411273)
chr6 (393-475)||(29185330-29185412)
chr6 (380-429)||(28933162-28933211)
chr6 (386-474)||(5944872-5944960)
chr6 (380-431)||(31107559-31107610)
chr6 (383-437)||(35074511-35074565)
chr6 (380-437)||(28099267-28099324)
chr6 (393-437)||(12836957-12837001)
chr6 (389-437)||(31868637-31868685)
[»] chr2 (7 HSPs)
chr2 (386-429)||(17627589-17627632)
chr2 (393-437)||(12133290-12133334)
chr2 (386-429)||(17672661-17672704)
chr2 (386-429)||(18105430-18105473)
chr2 (383-438)||(29995481-29995536)
chr2 (393-487)||(31579239-31579333)
chr2 (387-437)||(32643043-32643092)
[»] chr4 (8 HSPs)
chr4 (393-462)||(2434596-2434665)
chr4 (394-437)||(45994560-45994603)
chr4 (405-435)||(24348724-24348754)
chr4 (412-481)||(3649062-3649131)
chr4 (416-480)||(3976634-3976698)
chr4 (390-438)||(38844227-38844275)
chr4 (393-481)||(47023439-47023527)
chr4 (389-437)||(51626366-51626414)
[»] chr5 (5 HSPs)
chr5 (389-431)||(12682668-12682710)
chr5 (349-410)||(28023530-28023594)
chr5 (380-430)||(35774609-35774659)
chr5 (392-437)||(3525914-3525959)
chr5 (393-437)||(30785046-30785090)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 487
Target Start/End: Original strand, 10302777 - 10303245
Alignment:
Q  23 ttagaatagggcagaagctagtaaattactctactagctttggtgactttcttggactaatttgtctcctttatatagtggaacaaaatgtgttataatc 122  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302777 ttagaataggatagaagctagtaaattactctactagctttggtgactttcttggactaatttgtctcctttatatagtggaacaaaatgtgttataatc 10302876  T
Q  123 gacaacatgtaattgtctatatctttaaatgaccaccctagnnnnnnntaatcaaattctaataagcatatttttcatccacccttgttgaatgaagaat 222  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302877 gacaacatgtaattgtctatatctttaaatgaccaccctagaaaaaaataatcaaattctaataagcatatttttcatccacccttgttgaatgaagaat 10302976  T
Q  223 aaggttcctttgttattatataagtattcaaagaaattcctaatacagtgctatcattcaagcatatttatcaattatttcattttaaaatatttctttt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302977 aaggttcctttgttattatataagtattcaaagaaattcctaatacagtgctatcattcaagcatatttatcaattatttcattttaaaatatttctttt 10303076  T
Q  323 cagtgatattgaaacacctaagaatactt-agatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaa 418  Q
    |||||||||||||| |||||||||||||| |||||||||| |||  ||||||||||||   ||||||||| |||||||||||||||| ||||||||||||    
T  10303077 cagtgatattgaaatacctaagaatacttaagatgagatggcacaaatctattctagcttaactaaagtcttgagttcgaatccagctttagacatgcaa 10303176  T
Q  419 caacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcc 487  Q
    ||||||||||||| |||| |  ||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  10303177 caacgttaaaactcttagaaaaaatttaccgttcatttaggttccataatactcaagggattaatttcc 10303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 36982392 - 36982436
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  36982392 gttcgaattcagccttagacatgcaacaacgttaaaactcttagg 36982436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 24801371 - 24801462
Alignment:
Q  349 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||||||||||| | || |||    |||||||||||  |||||||||||||||||| |||||| ||  ||||||||| |||||    
T  24801371 cttagatgagatgacacggatttcttatagattaactaaagtccttggttcgaatccagccttaggcatgcagcactgttaaaactcttagg 24801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 35692519 - 35692591
Alignment:
Q  390 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 462  Q
    |||||||||||||| | || | |||||||| ||||||||||| |||||  || ||| ||||||||||||||||    
T  35692519 tgagttcgaatccaacattgggcatgcaacgacgttaaaactcttagggagagtttgccgctcatttaggtcc 35692591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 7242911 - 7242867
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||| ||| |||||||| ||||||||||||| |||||    
T  7242911 gttcgaatccagtcttggacatgcagcaacgttaaaactcttagg 7242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 13546450 - 13546526
Alignment:
Q  380 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 456  Q
    ||||||||| || |||||||||||| |||| ||||| ||||| ||||||||| ||| |  || |||||||| |||||    
T  13546450 actaaagtcgtgggttcgaatccagtcttatacatgtaacaatgttaaaactcttatggagagtttaccgcccattt 13546526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 25086130 - 25086078
Alignment:
Q  383 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaactttta 435  Q
    ||||| ||||||||||| |||  ||||  ||||||||||||||||||||||||    
T  25086130 aaagttctgagttcgaaaccaatcttaagcatgcaacaacgttaaaactttta 25086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 481
Target Start/End: Complemental strand, 8839432 - 8839297
Alignment:
Q  349 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 445  Q
    |||||||||||||| |||| ||| |||||||   || || |||||| |||||||||||||||| | |||||| || |||||||||| |||||  |||| |    
T  8839432 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatct 8839333  T
Q  446 accgctcatttaggtcccataatactcgaaggatta 481  Q
     ||||  |||||| ||||| ||||||||| ||||||    
T  8839332 gccgcctatttagatcccacaatactcgagggatta 8839297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 481
Target Start/End: Complemental strand, 13254252 - 13254117
Alignment:
Q  349 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 445  Q
    |||||||||||||  |||| ||| |||||||   || || ||||||||||||||||||||||||| |||||| || |||| ||||| |||||  ||   |    
T  13254252 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcct 13254153  T
Q  446 accgctcatttaggtcccataatactcgaaggatta 481  Q
     |||| ||||||||||||| ||| ||||| ||||||    
T  13254152 gccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 31717970 - 31717924
Alignment:
Q  392 agttcgaatccagccttagacatgcaacaacgttaaaacttttagga 438  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  31717970 agttcgaatccaaccttagacatgcagcaacgttaaaactcttagga 31717924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 28537427 - 28537471
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||| | |||||||||||||||||||| |||||    
T  28537427 gttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 28537471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 24172237 - 24172282
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 431  Q
    |||||| ||||||||||| |||| | ||||||||||||||||||||    
T  24172237 gtcctgggttcgaatccaaccttgggcatgcaacaacgttaaaact 24172282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 8878199 - 8878136
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 456  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||| || |||||| |||||||    
T  8878199 gttcgaatccagctttaggcatgcaacaacgttaaaactcttaggaagagtttacctctcattt 8878136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 483
Target Start/End: Original strand, 15682959 - 15683056
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaat 483  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||  ||   | |||| ||||||||||||| ||| ||||| ||||||||    
T  15682959 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaat 15683056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 30936034 - 30936085
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||    
T  30936034 gtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagg 30936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 27121899 - 27121809
Alignment:
Q  351 tagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 438  Q
    |||||||||| |||||| ||| |||||||   || ||||| ||| ||||||||||||| |||  |||||||||  ||||||||||||||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttagga 27121809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 8034222 - 8034189
Alignment:
Q  404 gccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||||||||||||||| |||||    
T  8034222 gccttagacatgcaacaacgttaaaactcttagg 8034189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 36994611 - 36994566
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 431  Q
    |||||| |||||||||||||||| |||||||| || ||||||||||    
T  36994611 gtcctgggttcgaatccagccttggacatgcagcagcgttaaaact 36994566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 4321604 - 4321564
Alignment:
Q  397 gaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  4321604 gaatccagtcttagacatgcaataacgttaaaactcttagg 4321564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 40294642 - 40294737
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 481  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| |||||   |  || ||||||||||   ||||| ||||||||||||||||    
T  40294642 gtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggatta 40294737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 22288225 - 22288316
Alignment:
Q  349 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||| | |||| ||||| |   || |||||||||||||||||| |||||||  ||||||||||| ||||||||| |||||    
T  22288225 cttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagg 22288316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 9651087 - 9651123
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaa 429  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  9651087 gttcgaattcagccttggacatgcaacaacgttaaaa 9651123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 21910236 - 21910321
Alignment:
Q  387 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactc 472  Q
    ||||| |||||||||||||||| | ||||||||| |||||||||| ||||   || | | |||||||||||||||||| |||||||    
T  21910236 tcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc 21910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 12411178 - 12411273
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 481  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||| || | | |||| |||||| |||||| ||| || || ||||||    
T  12411178 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggatta 12411273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 29185330 - 29185412
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaa 475  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||  |||| || ||  |||||||||| || ||| ||||||    
T  29185330 gttcgaatccagcattagacatgcatcaacgttaaaactcttagggagaatatatcgtccatttaggtctcacaatcctcgaa 29185412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 28933162 - 28933211
Alignment:
Q  380 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 429  Q
    ||||||||||||| || |||| ||||||||||||||||||| ||||||||    
T  28933162 actaaagtcctgattttgaattcagccttagacatgcaacatcgttaaaa 28933211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 5944872 - 5944960
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcga 474  Q
    ||||||||||||||| ||| ||| |||||| ||||  |||||||||||||||  || ||| |||| ||||||| ||| | |||||||||    
T  5944872 gtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgcccatttagatcctacaatactcga 5944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 31107610 - 31107559
Alignment:
Q  380 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 431  Q
    ||||| || ||||||||||||||||| || ||||||||||| ||||||||||    
T  31107610 actaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaact 31107559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 35074511 - 35074565
Alignment:
Q  383 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||||||||| ||| |||||  ||||||| |||| |||||||||||    
T  35074511 aaagtcctgagttcgaatctagctttagatgtgcaacaccgttcaaacttttagg 35074565  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 28099267 - 28099324
Alignment:
Q  380 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||| |||||| |||||||||||||||| | |||||| ||  |||||||||||||||    
T  28099267 actaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagg 28099324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 12837001 - 12836957
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||||| |||||| || |||||||||| |||||    
T  12837001 gttcgaatccagccttaggcatgcagcagcgttaaaactcttagg 12836957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 31868685 - 31868637
Alignment:
Q  389 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||||| |||| ||||| |||||| ||||||||| |||||    
T  31868685 ctgagttcgaatccaaccttggacatacaacaatgttaaaactcttagg 31868637  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 17627589 - 17627632
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 429  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  17627589 gtcctgagttcgaatccagccttgggcatgcaacaacgttaaaa 17627632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 12133334 - 12133290
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||    
T  12133334 gttcgaatccagccttggacatgcagcaacgttaaaactcttagg 12133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 17672661 - 17672704
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 429  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  17672661 gtcctgagttcgaatccaaccttgggcatgcaacaacgttaaaa 17672704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 18105473 - 18105430
Alignment:
Q  386 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 429  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  18105473 gtcctgggttcgaatccagccttgggcatgcaacaacgttaaaa 18105430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 29995536 - 29995481
Alignment:
Q  383 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 438  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||||| ||| ||||    
T  29995536 aaagtcctgagttcgaatccagcattgaaaatgcaacaacgttaaaattttaagga 29995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 487
Target Start/End: Complemental strand, 31579333 - 31579239
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcc 487  Q
    |||||||||||||||| | |||||||||  |||||||||||||||  || | | |||| |||||| |||||| ||| ||||| | |||| |||||    
T  31579333 gttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttcc 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 32643092 - 32643043
Alignment:
Q  387 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||| ||||||    
T  32643092 tcctgaattcgaatccagcctt-gacatgcaacaacgtcaaaacatttagg 32643043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 2434596 - 2434665
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 462  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| ||  | |||  |||||||||||||||    
T  2434596 gttcgaatccagccttggacatacaacaacgttaaaactcttacgaaaagtttgtcgctcatttaggtcc 2434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 45994560 - 45994603
Alignment:
Q  394 ttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  45994560 ttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 45994603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Original strand, 24348724 - 24348754
Alignment:
Q  405 ccttagacatgcaacaacgttaaaactttta 435  Q
    |||||||||||||||||||||||||||||||    
T  24348724 ccttagacatgcaacaacgttaaaactttta 24348754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 481
Target Start/End: Complemental strand, 3649131 - 3649062
Alignment:
Q  412 catgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 481  Q
    |||||||||||||||||||| |||||  || ||| |||||||||| | || || || |||||||||||||    
T  3649131 catgcaacaacgttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggatta 3649062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 480
Target Start/End: Original strand, 3976634 - 3976698
Alignment:
Q  416 caacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatt 480  Q
    ||||||||||||||||||||||  || |||||||| ||||| | ||||| || ||||| ||||||    
T  3976634 caacaacgttaaaacttttagggagattttaccgcccatttggatcccacaagactcgtaggatt 3976698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 38844275 - 38844227
Alignment:
Q  390 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 438  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  38844275 tgagttcgaatccagctttgggcatgcaacagcgttaaaactcttagga 38844227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 481
Target Start/End: Original strand, 47023439 - 47023527
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 481  Q
    |||| ||||||| ||||| |||||||||| ||||||||| |||||  || |||  ||  ||||| ||||||| || |||||||||||||    
T  47023439 gttccaatccagacttaggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggatta 47023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 51626414 - 51626366
Alignment:
Q  389 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    |||||||||||||||||||| | |||||| ||  |||||||||||||||    
T  51626414 ctgagttcgaatccagccttgggcatgcagcagtgttaaaacttttagg 51626366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 12682668 - 12682710
Alignment:
Q  389 ctgagttcgaatccagccttagacatgcaacaacgttaaaact 431  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  12682668 ctgagttcgaatccagccttgagcatgcaacaacgttaaaact 12682710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 28023594 - 28023530
Alignment:
Q  349 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttag 410  Q
    |||||||||||||  |||||||| |||||||   || || |||||||||||||||||||||||||    
T  28023594 cttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttag 28023530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 35774609 - 35774659
Alignment:
Q  380 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaac 430  Q
    ||||||||| |||||||||||  |||||| |||||||||||| ||||||||    
T  35774609 actaaagtcttgagttcgaatttagccttggacatgcaacaatgttaaaac 35774659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 3525959 - 3525914
Alignment:
Q  392 agttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||    
T  3525959 agttcgaatccactcttagacatgcaacattgttaaaacttttagg 3525914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 30785090 - 30785046
Alignment:
Q  393 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 437  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||    
T  30785090 gttcgaatccagctttggacatgcagcaacgttaaaactcttagg 30785046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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