View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14256_low_3 (Length: 402)
Name: NF14256_low_3
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14256_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 279 - 402
Target Start/End: Original strand, 43310995 - 43311118
Alignment:
| Q |
279 |
aaatctctattctaacatctttcttccacatgttctttgactgtaggatcttgttccgtgcacattgctttcatacgaaaatgagcatatacttatgtgg |
378 |
Q |
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| T |
43310995 |
aaatctctattctaacatctttcttccacgtgttctttgactgtaggatcttgttccgtgcacattgctttcatacgaaaatgagcatatacttatgtgg |
43311094 |
T |
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| Q |
379 |
agaggacggaattggaagtcctct |
402 |
Q |
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| T |
43311095 |
agaggacggaattggaagtcctct |
43311118 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 33864869 - 33864907
Alignment:
| Q |
54 |
cacaaaagtacatataatttaattattttaaaaatacac |
92 |
Q |
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| T |
33864869 |
cacaaaagtacatataatttaattattttaaaattacac |
33864907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 2259112 - 2259036
Alignment:
| Q |
20 |
tttgaaatttaaacacgttatttgaacatactcacacaaaagtacatataatttaattattttaaaaatacacgtta |
96 |
Q |
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| T |
2259112 |
tttgaaatttaaacacgttatttgaacatactcacacaaaagtacatataatttaattattttaaaaatacacgtta |
2259036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 2259003 - 2258934
Alignment:
| Q |
121 |
caaacatgtgtgtctaaatatatgtgtaaaatgagatatgggtttccaatcaacattttcctttctataa |
190 |
Q |
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| T |
2259003 |
caaacatgtgtgtctaaatatatgtgtaaaatgagatatgggtttccaatcaacattttcctttctataa |
2258934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 39939672 - 39939709
Alignment:
| Q |
52 |
cacacaaaagtacatataatttaattattttaaaaata |
89 |
Q |
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| T |
39939672 |
cacataaaaatacatataatttaattattttaaaaata |
39939709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 6953597 - 6953561
Alignment:
| Q |
52 |
cacacaaaagtacatataatttaattattttaaaaat |
88 |
Q |
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| T |
6953597 |
cacacaaaaatacatataaattaattattttaaaaat |
6953561 |
T |
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