View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14256_low_4 (Length: 294)

Name: NF14256_low_4
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14256_low_4
NF14256_low_4
[»] chr2 (3 HSPs)
chr2 (14-277)||(38998256-38998519)
chr2 (41-263)||(41048929-41049148)
chr2 (48-122)||(41041463-41041537)
[»] chr4 (2 HSPs)
chr4 (65-263)||(22901739-22901934)
chr4 (65-263)||(22953407-22953602)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 38998519 - 38998256
Alignment:
Q  14 ttatactatgttgttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38998519 ttatactatgttgttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaa 38998420  T
Q  114 tcccctgcagcaatcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38998419 tcccctgcagcaatcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactat 38998320  T
Q  214 aacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaagtaacaagatactac 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38998319 aacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaagtaacaagatactac 38998256  T

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Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 41 - 263
Target Start/End: Original strand, 41048929 - 41049148
Alignment:
Q  41 taaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattccccc 140  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |  | |||||||||||||    
T  41048929 taaccaatcaaggacaccaaatgacgatgacggaactgagacaacatttcaatttcagttctaaattcagcaatcccttgctgggaccgcggattccccc 41049028  T
Q  141 ttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgt 240  Q
    | |||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||| ||||||   ||||||||||||||||||||||| |||||    
T  41049029 tcttcactgccacttttctaccatcccttaactctcccttgtatactttcccaaaaccaccaacccca---ataacccaactctcatcaaaattatttgt 41049125  T
Q  241 accttcttgaacttccgcaaaag 263  Q
    ||| || ||||||||||||||||    
T  41049126 accctcctgaacttccgcaaaag 41049148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 41041463 - 41041537
Alignment:
Q  48 tcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgca 122  Q
    |||||||||||  ||| |||||  |||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  41041463 tcaaagacacctgatgccgatggtggaactgagacaacatttcaatttcaactcgaaattcagcaatcccctgca 41041537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 22901739 - 22901934
Alignment:
Q  65 cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat 164  Q
    |||||||||||||||||||||||||||||||||| ||  || || ||||  |||||  || | || || |||||||| ||    || |||||  | ||||    
T  22901739 cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat 22901838  T
Q  165 cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag 263  Q
    | ||||| || |  |||||||| || |||||||||||||| || |   ||||||||||||||||||||||||||||  | || |||||| |||||||||    
T  22901839 cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag 22901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 22953407 - 22953602
Alignment:
Q  65 cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat 164  Q
    |||||||||||||||||||||||||||||||||| ||  || || ||||  |||||  || | || || |||||||| ||    || |||||  | ||||    
T  22953407 cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat 22953506  T
Q  165 cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag 263  Q
    | ||||| || |  |||||||| || |||||||||||||| || |   ||||||||||||||||||||||||||||  | || |||||| |||||||||    
T  22953507 cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag 22953602  T

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