View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14256_low_7 (Length: 234)

Name: NF14256_low_7
Description: NF14256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14256_low_7
NF14256_low_7
[»] chr2 (2 HSPs)
chr2 (20-233)||(14128236-14128453)
chr2 (21-232)||(4259574-4259785)
[»] chr3 (3 HSPs)
chr3 (20-224)||(28727873-28728081)
chr3 (30-232)||(35544252-35544458)
chr3 (184-231)||(8966939-8966986)
[»] chr5 (2 HSPs)
chr5 (20-232)||(34152304-34152520)
chr5 (113-182)||(29023372-29023445)
[»] chr8 (1 HSPs)
chr8 (20-158)||(4780828-4780966)
[»] chr1 (2 HSPs)
chr1 (33-224)||(18285369-18285565)
chr1 (40-123)||(46481613-46481696)
[»] chr4 (1 HSPs)
chr4 (22-92)||(41972903-41972973)
[»] chr6 (1 HSPs)
chr6 (163-232)||(18506599-18506668)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 14128453 - 14128236
Alignment:
Q  20 gagtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtg 119  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  14128453 gagtgtgcgtagcagctttcacttgtggttttgaaggttgttgggtcttacaagtagatttggaagcttcatttttctcacaggtacatggtcaaaagtg 14128354  T
Q  120 cttataaacatttgattagtttggatgtgacagttgat----gctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttg 215  Q
    |||||||||||||||||||||||||||||| |||||||    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  14128353 cttataaacatttgattagtttggatgtgatagttgatgaccgctgcaatcatgttttatggcttaagcaaattccgcttacgatcaatatttttatttg 14128254  T
Q  216 gcgtttgttccagaataa 233  Q
    | ||||||||||||||||    
T  14128253 gtgtttgttccagaataa 14128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 4259785 - 4259574
Alignment:
Q  21 agtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatt-tttctcacaggtactaggtcaaaagtg 119  Q
    |||||| |||||| ||||||||||| ||||||||||||| |||  || ||| ||||||||| |||||||||| ||||| | ||||||  |||||||||||    
T  4259785 agtgtgtggagcaacttttacttgttgttttgcaggttggtgtaactgacatgtggatttgaaagcttcattctttct-aaaggtacacggtcaaaagtg 4259687  T
Q  120 cttataaacatttgattagtttggatgtgacagttgat----gctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttg 215  Q
    |||||    | |||| | | | ||||||| || |||||    | ||||||||||||||||||||||| ||||||| || || | | |||| |||||||||    
T  4259686 cttat----acttgacttgatcggatgtggcaattgatgaccgttgcaatcatgttttatggcttaagcaaattctgtgtaaggttaatatttttatttg 4259591  T
Q  216 gcgtttgttccagaata 232  Q
    || |||||||| |||||    
T  4259590 gcatttgttcctgaata 4259574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 28727873 - 28728081
Alignment:
Q  20 gagtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtg 119  Q
    |||||||| |||||||| | ||||||||||||||||||||  |||||| ||  |||||||||||||||||||| ||||||||  |||  |||||||||||    
T  28727873 gagtgtgcagagcagctctcacttgtggttttgcaggttggcgtgtctgactggtggatttggaagcttcattcttctcacatatacccggtcaaaagtg 28727972  T
Q  120 cttataaacatttgattagtttggatgtgacagttgat----gctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttg 215  Q
    ||| ||| || |||| ||||| |||||||  | |||||    ||| ||||||| |||||||||||||  |||||| | ||| | |||||| |||||||||    
T  28727973 cttttaatcacttgactagttcggatgtgggaattgatgaccgctacaatcatattttatggcttaagtaaattctgcttaaggtcaatatttttatttg 28728072  T
Q  216 gcgtttgtt 224  Q
    |||||||||    
T  28728073 gcgtttgtt 28728081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 35544252 - 35544458
Alignment:
Q  30 agcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtgcttataaaca 129  Q
    ||||||||| |||| ||||||||||||||| ||||||   || ||||||||||||| |  ||| |||||||||||||   ||||||||||||||||| |     
T  35544252 agcagctttcacttctggttttgcaggttggtgtgtcggccatgtggatttggaagttgtattcttctcacaggtacactgtcaaaagtgcttataatcg 35544351  T
Q  130 tttgattagtttggatgtgacagttgat----gctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttggcgtttgttc 225  Q
     ||||  |||| ||||||| || |||||    | ||||||||||||||||||||||| ||||||||| ||| | | |||| |||| |||| |||||||||    
T  35544352 cttgaccagttcggatgtggcaattgatgaccgttgcaatcatgttttatggcttaagcaaattccgcttaaggtaaatatttttttttgacgtttgttc 35544451  T
Q  226 cagaata 232  Q
    | |||||    
T  35544452 ctgaata 35544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 8966986 - 8966939
Alignment:
Q  184 caaattccgtttacgatcaatacttttatttggcgtttgttccagaat 231  Q
    ||||||||||||| | |||||| |||||||||||||||||||| ||||    
T  8966986 caaattccgtttaaggtcaatatttttatttggcgtttgttcctgaat 8966939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 34152520 - 34152304
Alignment:
Q  20 gagtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtg 119  Q
    ||||||||||||||||||| |||||| || |||||||||| ||||  | ||| |||||||||||||||||||| |||  | ||||||  ||| ||||| |    
T  34152520 gagtgtgcggagcagctttcacttgttgtattgcaggttggtgtgaatgacaggtggatttggaagcttcattcttcctataggtacacggttaaaagcg 34152421  T
Q  120 cttataaacatttgattagtttggatgtgacagttga----tgctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttg 215  Q
    |||||||   ||||| ||| |  ||||||  | ||||    || |||||||||||||||||||||||  |||||||| ||| | |||||| |||||||||    
T  34152420 cttataatattttgactagctcagatgtggaaattgatgactgttgcaatcatgttttatggcttaagaaaattccgcttaaggtcaatatttttatttg 34152321  T
Q  216 gcgtttgttccagaata 232  Q
    | ||||||||| |||||    
T  34152320 gtgtttgttcctgaata 34152304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 29023445 - 29023372
Alignment:
Q  113 aaaagtgcttataaacatttgattagtttggatgtgacagttgat----gctgcaatcatgttttatggcttaa 182  Q
    |||||||||||||| || |||| ||||||| ||||| |  |||||    |||||||||||||||||||||||||    
T  29023445 aaaagtgcttataatcacttgactagtttgaatgtggcgattgatgatcgctgcaatcatgttttatggcttaa 29023372  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 4780966 - 4780828
Alignment:
Q  20 gagtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtg 119  Q
    ||||||||  |||| |||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||||||| ||| || | ||||  |||||||||||    
T  4780966 gagtgtgcaaagcaactttcacttgtggttttgtaggttgatgtgtctgacaggtggatttggaagcttcattcttcccataagtacacggtcaaaagtg 4780867  T
Q  120 cttataaacatttgattagtttggatgtgacagttgatg 158  Q
    ||||||| || |||| ||||| ||||||| || ||||||    
T  4780866 cttataatcacttgactagttcggatgtggcaattgatg 4780828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 18285369 - 18285565
Alignment:
Q  33 agcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatt-tttctcacaggtactaggtcaaaagtgcttataaacatt 131  Q
    |||||| || ||||||||||||||||| |||| || ||| |  ||||||||||||||||  ||||| | ||||||  ||||||||| |||||||| || |    
T  18285369 agctttcacctgtggttttgcaggttgatgtgactgacaggctgatttggaagcttcatactttct-ataggtacacggtcaaaagcgcttataatcact 18285467  T
Q  132 tgattagtttggatgtgacagttgat-----gctgcaatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttggcgtttgtt 224  Q
    ||| ||| | ||| ||| || |||||     | || |||||||||||||||||||| ||||||||| ||| | | |||| ||||||||| ||||||||    
T  18285468 tgactagatcggacgtggcaattgatataccgttgtaatcatgttttatggcttaagcaaattccgcttaaggttaataattttatttgtcgtttgtt 18285565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 46481613 - 46481696
Alignment:
Q  40 acttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatttttctcacaggtactaggtcaaaagtgctta 123  Q
    ||||||||||||||| |||| ||||||  ||| ||| |||||||||||||||| || ||||| ||||  |||||||||||||||    
T  46481613 acttgtggttttgcatgttggtgtgtcgaacatgtgaatttggaagcttcattcttttcacatgtacacggtcaaaagtgctta 46481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 41972903 - 41972973
Alignment:
Q  22 gtgtgcggagcagcttttacttgtggttttgcaggttgttgtgtcttacaagtggatttggaagcttcatt 92  Q
    ||||| ||||||| | | |||||| ||||||||||||  |||| || ||| ||||||||||||||||||||    
T  41972903 gtgtgtggagcagttgtcacttgttgttttgcaggttcgtgtgactgacatgtggatttggaagcttcatt 41972973  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 18506668 - 18506599
Alignment:
Q  163 aatcatgttttatggcttaaacaaattccgtttacgatcaatacttttatttggcgtttgttccagaata 232  Q
    |||||| ||||||||||||| |||||| || ||| | | |||| ||||||||||| ||||||||| ||||    
T  18506668 aatcatattttatggcttaagcaaatttcgcttaaggttaatatttttatttggcatttgttccaaaata 18506599  T

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