View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14257_high_1 (Length: 659)

Name: NF14257_high_1
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14257_high_1
NF14257_high_1
[»] chr7 (30 HSPs)
chr7 (249-608)||(39619790-39620149)
chr7 (1-184)||(39620214-39620397)
chr7 (546-608)||(41694953-41695016)
chr7 (544-608)||(12933415-12933480)
chr7 (295-348)||(39340842-39340895)
chr7 (542-598)||(43065995-43066051)
chr7 (543-608)||(24197101-24197167)
chr7 (295-348)||(39355650-39355703)
chr7 (546-608)||(17066423-17066486)
chr7 (547-608)||(24195606-24195668)
chr7 (546-607)||(30513280-30513341)
chr7 (532-601)||(31489941-31490010)
chr7 (295-348)||(39545207-39545260)
chr7 (295-348)||(39562039-39562092)
chr7 (547-600)||(41693644-41693697)
chr7 (546-608)||(31848142-31848205)
chr7 (549-600)||(31853549-31853600)
chr7 (546-601)||(32197915-32197970)
chr7 (546-600)||(5611514-5611568)
chr7 (551-608)||(11217069-11217127)
chr7 (547-608)||(35212067-35212129)
chr7 (549-598)||(30512046-30512095)
chr7 (547-600)||(36749254-36749307)
chr7 (551-600)||(38742184-38742233)
chr7 (295-348)||(39368395-39368448)
chr7 (295-348)||(39535845-39535898)
chr7 (547-600)||(42254957-42255010)
chr7 (548-600)||(36748198-36748249)
chr7 (388-448)||(39355743-39355803)
chr7 (394-466)||(39583702-39583774)
[»] chr3 (31 HSPs)
chr3 (549-600)||(45267306-45267357)
chr3 (538-601)||(22508725-22508788)
chr3 (546-600)||(20585651-20585705)
chr3 (543-608)||(39820602-39820668)
chr3 (546-600)||(54437474-54437528)
chr3 (546-608)||(45268568-45268631)
chr3 (546-608)||(47433807-47433870)
chr3 (546-600)||(38505586-38505640)
chr3 (546-600)||(46026074-46026128)
chr3 (546-600)||(52707534-52707588)
chr3 (548-609)||(52708614-52708676)
chr3 (547-608)||(53121301-53121363)
chr3 (547-600)||(52401016-52401069)
chr3 (548-600)||(46104343-46104395)
chr3 (548-600)||(48033058-48033110)
chr3 (546-608)||(976778-976841)
chr3 (550-608)||(20488368-20488427)
chr3 (543-598)||(37845400-37845455)
chr3 (547-598)||(44507808-44507859)
chr3 (541-579)||(35407759-35407797)
chr3 (547-601)||(35639506-35639560)
chr3 (549-599)||(40476222-40476272)
chr3 (547-608)||(46027415-46027477)
chr3 (546-600)||(52403131-52403185)
chr3 (549-594)||(15782216-15782261)
chr3 (551-608)||(15782708-15782765)
chr3 (547-600)||(40477381-40477434)
chr3 (546-599)||(42446524-42446577)
chr3 (548-600)||(4705681-4705733)
chr3 (548-600)||(9855178-9855230)
chr3 (549-608)||(20489356-20489416)
[»] chr5 (13 HSPs)
chr5 (550-608)||(6044132-6044190)
chr5 (547-608)||(3936577-3936639)
chr5 (543-608)||(27459489-27459554)
chr5 (546-599)||(34910591-34910643)
chr5 (546-608)||(3954050-3954113)
chr5 (540-606)||(31540488-31540555)
chr5 (546-600)||(4565391-4565445)
chr5 (550-608)||(27570058-27570116)
chr5 (547-608)||(27571127-27571189)
chr5 (548-588)||(25252641-25252681)
chr5 (548-588)||(25316426-25316466)
chr5 (548-580)||(31541649-31541681)
chr5 (543-579)||(40038489-40038525)
[»] chr2 (13 HSPs)
chr2 (547-608)||(1777468-1777530)
chr2 (546-600)||(25977868-25977922)
chr2 (548-607)||(11088679-11088739)
chr2 (546-608)||(2412426-2412489)
chr2 (547-608)||(25979249-25979311)
chr2 (545-608)||(23861749-23861813)
chr2 (546-608)||(4038840-4038903)
chr2 (545-595)||(12068357-12068407)
chr2 (543-608)||(36837776-36837842)
chr2 (548-601)||(11087049-11087102)
chr2 (545-609)||(19603735-19603799)
chr2 (548-596)||(25283283-25283331)
chr2 (546-598)||(29794326-29794377)
[»] scaffold0106 (1 HSPs)
scaffold0106 (544-608)||(30905-30970)
[»] chr1 (24 HSPs)
chr1 (548-608)||(46075048-46075109)
chr1 (547-608)||(27262907-27262969)
chr1 (541-608)||(9774886-9774954)
chr1 (545-608)||(27264214-27264278)
chr1 (547-608)||(20723686-20723748)
chr1 (547-597)||(45979506-45979556)
chr1 (547-601)||(50164402-50164456)
chr1 (551-600)||(9774040-9774089)
chr1 (548-608)||(24427367-24427428)
chr1 (547-600)||(26863859-26863912)
chr1 (548-601)||(37396846-37396899)
chr1 (547-600)||(48588968-48589021)
chr1 (548-600)||(24609919-24609971)
chr1 (547-635)||(24611088-24611177)
chr1 (545-608)||(35721098-35721162)
chr1 (545-608)||(23292576-23292639)
chr1 (542-581)||(46073879-46073918)
chr1 (547-608)||(11710552-11710614)
chr1 (547-608)||(47038865-47038927)
chr1 (547-600)||(37395632-37395685)
chr1 (545-598)||(48334141-48334194)
chr1 (548-608)||(11711252-11711312)
chr1 (548-588)||(23469988-23470028)
chr1 (546-609)||(34934744-34934808)
[»] chr6 (16 HSPs)
chr6 (548-600)||(1974159-1974211)
chr6 (545-608)||(34995111-34995175)
chr6 (546-608)||(17517307-17517370)
chr6 (546-608)||(34998139-34998202)
chr6 (551-608)||(3279497-3279555)
chr6 (548-608)||(18810532-18810593)
chr6 (550-600)||(17516164-17516214)
chr6 (548-608)||(20897495-20897556)
chr6 (539-600)||(21165237-21165298)
chr6 (547-608)||(16995450-16995512)
chr6 (551-600)||(1171658-1171707)
chr6 (551-600)||(20391217-20391266)
chr6 (550-595)||(20895960-20896005)
chr6 (547-600)||(29291358-29291411)
chr6 (550-599)||(30253547-30253596)
chr6 (548-600)||(17000284-17000336)
[»] chr8 (20 HSPs)
chr8 (547-609)||(22534719-22534782)
chr8 (550-600)||(3483635-3483685)
chr8 (550-600)||(38455449-38455499)
chr8 (549-608)||(28996835-28996895)
chr8 (548-600)||(28998000-28998052)
chr8 (546-608)||(10717119-10717182)
chr8 (545-600)||(10718455-10718510)
chr8 (547-608)||(36588221-36588283)
chr8 (546-608)||(30124221-30124284)
chr8 (546-608)||(38658479-38658542)
chr8 (549-600)||(39440429-39440480)
chr8 (545-600)||(45517967-45518022)
chr8 (547-601)||(6783577-6783631)
chr8 (548-589)||(1420460-1420501)
chr8 (547-600)||(14197824-14197877)
chr8 (549-609)||(41354472-41354533)
chr8 (540-608)||(45516389-45516458)
chr8 (548-600)||(4183986-4184038)
chr8 (547-595)||(30123151-30123199)
chr8 (538-598)||(41357375-41357435)
[»] chr4 (18 HSPs)
chr4 (546-600)||(19674412-19674466)
chr4 (547-601)||(29060888-29060942)
chr4 (547-608)||(33137226-33137288)
chr4 (538-601)||(41933808-41933871)
chr4 (546-600)||(3879084-3879138)
chr4 (547-608)||(42358031-42358093)
chr4 (547-600)||(3880503-3880556)
chr4 (548-608)||(22204055-22204116)
chr4 (548-608)||(42359344-42359405)
chr4 (548-600)||(32699321-32699373)
chr4 (546-598)||(38166493-38166545)
chr4 (546-608)||(45618283-45618346)
chr4 (551-609)||(41935068-41935126)
chr4 (548-598)||(44705299-44705349)
chr4 (550-599)||(16916069-16916118)
chr4 (546-579)||(33134889-33134922)
chr4 (545-608)||(30091053-30091117)
chr4 (545-608)||(54121698-54121762)
[»] scaffold0230 (1 HSPs)
scaffold0230 (548-608)||(429-490)
[»] scaffold0002 (3 HSPs)
scaffold0002 (548-600)||(374335-374387)
scaffold0002 (546-600)||(345904-345958)
scaffold0002 (546-595)||(376381-376430)
[»] scaffold0562 (1 HSPs)
scaffold0562 (546-600)||(9920-9974)
[»] scaffold0517 (2 HSPs)
scaffold0517 (548-601)||(10315-10368)
scaffold0517 (547-600)||(11529-11582)
[»] scaffold0001 (2 HSPs)
scaffold0001 (548-600)||(119593-119645)
scaffold0001 (548-608)||(120983-121044)
[»] scaffold0095 (1 HSPs)
scaffold0095 (549-600)||(42762-42813)
[»] scaffold0765 (1 HSPs)
scaffold0765 (551-596)||(1863-1908)
[»] scaffold0516 (1 HSPs)
scaffold0516 (548-600)||(1142-1194)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 249 - 608
Target Start/End: Complemental strand, 39620149 - 39619790
Alignment:
Q  249 gatatgtgataaaagagaattccaatatggtggagatggttttaccgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39620149 gatatgtgataaaagagaattccaatatggtggagatggttttactgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 39620050  T
Q  349 gtataaaagatcatattgagtataatggaaaaggtgtttcagtagaagactttttggaaaattactttggtttccagcatgattttttgggagtagttgc 448  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39620049 gtataaaagatcatattgagtataatggaaaaagtgtttcagtagaagactttttggaaaattactttggtttccagcatgaatttttgggagtagttgc 39619950  T
Q  449 agctgtggttgttggattcaatgtggttttcggtttagtttttgtcatgtctatcaagatgtttaattttcaatcgcgataagtgtaccattataaatag 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39619949 agctgtggttgttggattcaatgtggttttcggtttagtttttgtcatgtctatcaagatgtttaatttccaatcgcgataagtgtaccattataaatag 39619850  T
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    ||||||||||| ||||| ||||||||||||| | ||||||| |||||||| |||||||||    
T  39619849 gctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggttctggtaaaa 39619790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 39620397 - 39620214
Alignment:
Q  1 tattttttgttttcttcacctccctatactgtacctactacggcatgatgacaatggctataaccccaaaccaaaccattgtctctttccttacccgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39620397 tattttttgttttcttcacctccctatactgtacctactacggcatgatgacaatagctataaccccaaaccaaaccattgtctctttccttacccgtcc 39620298  T
Q  101 gtcctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39620297 gtcctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag 39620214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 41695016 - 41694953
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||    
T  41695016 taggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaaaa 41694953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 12933415 - 12933480
Alignment:
Q  544 aataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||    
T  12933415 aataggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaaaa 12933480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 39340842 - 39340895
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  39340842 gggcaaatccaatggcatggagtttgtatggattggcggcttcacaatatggag 39340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 43065995 - 43066051
Alignment:
Q  542 taaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    |||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  43065995 taaataggttaaaatatgttttttatccctgcaaatatagcgagtttgagttttggt 43066051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 24197167 - 24197101
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 608  Q
    ||||||||||||||||| ||||| ||| ||||||||||| || |||||||||||| |||||||||||    
T  24197167 aaataggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaaaa 24197101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 39355650 - 39355703
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||| |||||    
T  39355650 gggcaaatccaatagcgtggagtttgtatggattggtggcttcacaatatggag 39355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 17066423 - 17066486
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| |||| |||| ||||||||||| ||||||| |||||||| ||||||||||    
T  17066423 taggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 17066486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 24195606 - 24195668
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||| | ||||||||||    
T  24195606 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaaaa 24195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 607
Target Start/End: Complemental strand, 30513341 - 30513280
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaa 607  Q
    |||||||||||||| ||||| ||| |||||||||  ||||||||  ||||||||||||||||    
T  30513341 taggctaaaatatgattttggtccttgcaaatatgatgagtttggattttggtcctggtaaa 30513280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 31490010 - 31489941
Alignment:
Q  532 tgtaccattataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||| |||| ||| || ||||||||||||||||| ||| ||||||||||  ||||||| |||||||||||    
T  31490010 tgtagcattctaattaagctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcct 31489941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 39545260 - 39545207
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||||||| |||||    
T  39545260 gggccaatccagtggcttggagtttgtatggattggtggcttcacaatatggag 39545207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 39562092 - 39562039
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    ||||||||||||| || ||||||||| |||||||||||| |||||||| |||||    
T  39562092 gggcaaatccaatagcgtggagtttgtatggattggtggtttcacaatatggag 39562039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 41693644 - 41693697
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||||||| ||||||||| | || |||| ||||||||||    
T  41693644 aggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtcc 41693697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 31848205 - 31848142
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||||  ||| ||||||||||| || |||| |||||||| ||||||||||    
T  31848205 taggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaaaa 31848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 600
Target Start/End: Original strand, 31853549 - 31853600
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||| ||| ||||||||| |||||||||  |||||||||    
T  31853549 gctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtcc 31853600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 601
Target Start/End: Complemental strand, 32197970 - 32197915
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||||||||||||| ||||| ||| ||||||||||| || |||| |||||||||||    
T  32197970 taggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtcct 32197915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 5611568 - 5611514
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| ||||| ||||    
T  5611568 taggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtcc 5611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 608
Target Start/End: Complemental strand, 11217127 - 11217069
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||| ||||| ||| ||||||||||| |||||||| ||||||| ||||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaa 11217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 35212067 - 35212129
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| |||||||||   ||||||| |||||||| ||||||||||    
T  35212067 aggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 35212129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 30512046 - 30512095
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    |||||||||| |||||| ||| ||||||||||| || |||||||||||||    
T  30512046 gctaaaatatatttttgttccttgcaaatatagcgaatttgagttttggt 30512095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 36749307 - 36749254
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||  |||||||||   ||||||||||||||||||    
T  36749307 aggctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggtcc 36749254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 38742184 - 38742233
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||  ||| ||||||||||| ||||||| ||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtcc 38742233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 39368395 - 39368448
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    ||||||||||| |||||||||||||  | ||||||||| ||||||||| |||||    
T  39368395 gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag 39368448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 39535898 - 39535845
Alignment:
Q  295 gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag 348  Q
    ||||||||||| |||||||||||||  | ||||||||| ||||||||| |||||    
T  39535898 gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag 39535845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 42254957 - 42255010
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||| ||||| ||| || |||||| | ||||||||||||||||||    
T  42254957 aggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtcc 42255010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 36748198 - 36748249
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||    
T  36748198 ggctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggtcc 36748249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 39355743 - 39355803
Alignment:
Q  388 cagtagaagactttttggaaaattactttggtttccagcatgattttttgggagtagttgc 448  Q
    |||| ||||| ||||||  |||||||||||||||| ||||||||||| | ||||| |||||    
T  39355743 cagtggaagaatttttgagaaattactttggtttcaagcatgattttctaggagtggttgc 39355803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 466
Target Start/End: Complemental strand, 39583774 - 39583702
Alignment:
Q  394 aagactttttggaaaattactttggtttccagcatgattttttgggagtagttgcagctgtggttgttggatt 466  Q
    |||||||||||  | |||||||||||||| || |||| ||||||||  ||||||||| | | |||||||||||    
T  39583774 aagactttttgcgagattactttggtttcaagtatgaatttttggggatagttgcagttatagttgttggatt 39583702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 600
Target Start/End: Original strand, 45267306 - 45267357
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  45267306 gctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtcc 45267357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 601
Target Start/End: Original strand, 22508725 - 22508788
Alignment:
Q  538 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||| ||||||| ||||||||| ||||| ||| ||||||||||| |||||||||||||||||||    
T  22508725 attaaaaataggttaaaatatgattttggtccctgcaaatatagcgagtttgagttttggtcct 22508788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 20585705 - 20585651
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||||||| ||||||||||| |||||||  |||||||||    
T  20585705 taggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtcc 20585651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 39820668 - 39820602
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  39820668 aaataggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 39820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 54437528 - 54437474
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||| ||| ||||||||||| || |||||||||||||||    
T  54437528 taggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtcc 54437474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 45268631 - 45268568
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| |||| |||||||||||  |||||| |||||||| ||||||||||    
T  45268631 taggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaaaa 45268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 47433870 - 47433807
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||| ||| ||||||||||| || ||||||||||||| ||||||||||    
T  47433870 taggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaaa 47433807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 38505640 - 38505586
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  38505640 taggctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtcc 38505586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 46026074 - 46026128
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||  |||||||||    
T  46026074 taggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtcc 46026128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 52707534 - 52707588
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||| ||||||||||||||| ||| ||||||||||| || |||||||||||||||    
T  52707534 taggttaaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtcc 52707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 52708676 - 52708614
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc-ctggtaaaat 609  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  52708676 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggtaaaat 52708614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 53121301 - 53121363
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  53121301 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 53121363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 52401016 - 52401069
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||    
T  52401016 aggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtcc 52401069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 46104343 - 46104395
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||||||||| ||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtcc 46104395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 48033058 - 48033110
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||| ||| ||||||||| |||||||||  |||||||||    
T  48033058 ggctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtcc 48033110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 976778 - 976841
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||||||| ||||||||||| || ||| |||||| || ||||||||||    
T  976778 taggctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctggtaaaa 976841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 20488368 - 20488427
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||| ||| ||||||||| |||| |||| |||||||| ||||||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaaaa 20488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 37845400 - 37845455
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||  |||||||    
T  37845400 aaataggttaaaatatgtttttggtctctgcaaatatagtgagtttgtattttggt 37845455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 598
Target Start/End: Complemental strand, 44507859 - 44507808
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    ||||||||||||| ||||| ||| ||||||||||| |||||||| |||||||    
T  44507859 aggctaaaatatgattttggtccctgcaaatatagcgagtttgaattttggt 44507808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 35407797 - 35407759
Alignment:
Q  541 ataaataggctaaaatatgtttttgatccatgcaaatat 579  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  35407797 ataaataggctaaaatatggttttgatccctgcaaatat 35407759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 601
Target Start/End: Original strand, 35639506 - 35639560
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    ||||||||||||| ||||| ||| || ||||||||  ||||||||||||||||||    
T  35639506 aggctaaaatatgcttttggtccttgaaaatatagcaagtttgagttttggtcct 35639560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 599
Target Start/End: Original strand, 40476222 - 40476272
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 599  Q
    ||||||||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 46027477 - 46027415
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||  ||||| ||| ||||||||||| |||||||| ||||||| ||||||||||    
T  46027477 aggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaa 46027415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 52403185 - 52403131
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||| ||||||||||    
T  52403185 taggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtcc 52403131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 15782216 - 15782261
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttt 594  Q
    |||||||||| |||||| ||| ||||||||||| ||||||||||||    
T  15782216 gctaaaatatatttttggtccctgcaaatatagcgagtttgagttt 15782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 608
Target Start/End: Complemental strand, 15782765 - 15782708
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    ||||||||||||||| ||| | ||||||||| || ||||||||||  |||||||||||    
T  15782765 taaaatatgtttttggtccctacaaatatagcgaatttgagttttattcctggtaaaa 15782708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 40477434 - 40477381
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||| ||||| ||| ||||||||||  ||||||| ||||||||||    
T  40477434 aggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtcc 40477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 42446524 - 42446577
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 599  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||| |||||||||    
T  42446524 taggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 4705681 - 4705733
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||||||| ||||||||| | ||||||  ||||||||||    
T  4705681 ggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtcc 4705733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 9855178 - 9855230
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||||||| || |||||||| |||||||  |||||||||    
T  9855178 ggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtcc 9855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 608
Target Start/End: Complemental strand, 20489416 - 20489356
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||| ||| |||||||||   ||||||| |||||||| ||||||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 20489356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 608
Target Start/End: Complemental strand, 6044190 - 6044132
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    |||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||    
T  6044190 ctaaaatatgattttgattcatgcaaatatgatgagtttgagttttggtcctggtaaaa 6044132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 3936577 - 3936639
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  3936577 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 3936639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 27459554 - 27459489
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    ||||||||||||||||| |||| |||| |||||||||||  ||||||| ||||| |||| ||||||    
T  27459554 aaataggctaaaatatgcttttaatccttgcaaatatagcaagtttgaattttgatcctcgtaaaa 27459489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 34910591 - 34910643
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 599  Q
    ||||||||||||||||||| |||| |||||||||||  ||||||||||||||||    
T  34910591 taggctaaaatatgttttt-atccctgcaaatatagcaagtttgagttttggtc 34910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 3954050 - 3954113
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  3954050 taggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaaaa 3954113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 606
Target Start/End: Original strand, 31540488 - 31540555
Alignment:
Q  540 tataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaa 606  Q
    ||||| |||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||    
T  31540488 tataattaggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggtaa 31540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 4565391 - 4565445
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||  ||| | ||||||||| ||||||| ||||||||||    
T  4565391 taggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtcc 4565445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 27570058 - 27570116
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    |||||||||| ||||| ||| ||||||||||| ||||||| |||||| ||| |||||||    
T  27570058 ctaaaatatgattttggtccttgcaaatatagcgagtttgggttttgttcccggtaaaa 27570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 27571189 - 27571127
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| | ||||||||||    
T  27571189 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaaaa 27571127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Original strand, 25252641 - 25252681
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 588  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  25252641 ggctaaaatatgtttttgatctctgcaaatatagcgagttt 25252681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Original strand, 25316426 - 25316466
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 588  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  25316426 ggctaaaatatgtttttgatctctgcaaatatagcgagttt 25316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 580
Target Start/End: Complemental strand, 31541681 - 31541649
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatata 580  Q
    |||||||||||||||||||||| ||||||||||    
T  31541681 ggctaaaatatgtttttgatccctgcaaatata 31541649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 579
Target Start/End: Original strand, 40038489 - 40038525
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatat 579  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  40038489 aaataggctaaaatatggttttgatccctgcaaatat 40038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 1777468 - 1777530
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||    
T  1777468 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaaaa 1777530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 25977868 - 25977922
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  25977868 taggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtcc 25977922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 11088739 - 11088679
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaa 607  Q
    |||||||||||||||||  ||||||||||||||| || |||||||||||| ||||||||||    
T  11088739 ggctaaaatatgtttttcgtccatgcaaatatagcgaatttgagttttggttcctggtaaa 11088679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 2412489 - 2412426
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  2412489 taggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 2412426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 25979311 - 25979249
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| || |||| |||||||| ||||||||||    
T  25979311 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaa 25979249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 23861749 - 23861813
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||||| ||| ||||||||| | |||||||  ||||||| ||||||||||    
T  23861749 ataggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaaaa 23861813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 4038840 - 4038903
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||||||| || ||||||||| ||||||  ||||||| ||||||||||    
T  4038840 taggctaaaatatgattttgatccctgtaaatatagtaagtttggattttggtacctggtaaaa 4038903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 12068407 - 12068357
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 595  Q
    ||||||||||||||| ||||||||| ||||||||||| || ||| ||||||    
T  12068407 ataggctaaaatatgcttttgatccctgcaaatatagcgaatttaagtttt 12068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 36837842 - 36837776
Alignment:
Q  543 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||| |||||||| |||||| ||  ||||||||||| ||||||| |||||||| ||||||||||    
T  36837842 aaataggttaaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggtaaaa 36837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 11087049 - 11087102
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||||||||||| |||| |||| ||||||||||| |||||||  ||||||||||    
T  11087049 ggctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggtcct 11087102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 19603735 - 19603799
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaat 609  Q
    ||||||| ||||||||||||| ||| ||||||||||     |||| |||||||||||||||||||    
T  19603735 ataggcttaaatatgtttttggtccctgcaaatataactcatttgggttttggtcctggtaaaat 19603799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 25283331 - 25283283
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttg 596  Q
    |||||||||||||||||| ||  ||||||||||| || |||||||||||    
T  25283331 ggctaaaatatgtttttggtcactgcaaatatagcgaatttgagttttg 25283283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 598
Target Start/End: Complemental strand, 29794377 - 29794326
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    |||||||||||||||||| | ||| ||||||||||| || |||||||||||||    
T  29794377 taggctaaaatatgttttgg-tccctgcaaatatagcgaatttgagttttggt 29794326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 608
Target Start/End: Complemental strand, 30970 - 30905
Alignment:
Q  544 aataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  30970 aataggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 30905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 46075109 - 46075048
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||    
T  46075109 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 46075048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 27262907 - 27262969
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  27262907 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaaaa 27262969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 608
Target Start/End: Complemental strand, 9774954 - 9774886
Alignment:
Q  541 ataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||| ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  9774954 ataaaaaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 9774886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 27264278 - 27264214
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  27264278 ataggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 27264214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 20723748 - 20723686
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||| || |||||||||| || ||||||||||    
T  20723748 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaaaa 20723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 597
Target Start/End: Complemental strand, 45979556 - 45979506
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg 597  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||||    
T  45979556 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 601
Target Start/End: Original strand, 50164402 - 50164456
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    ||||||||||||| ||||| ||| ||||||||| | |||||||||||||||||||    
T  50164402 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtcct 50164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 9774040 - 9774089
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||| ||| ||||||||||  ||||||||||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtcc 9774089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 24427428 - 24427367
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||| || ||||||||||    
T  24427428 ggctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggtaaaa 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 26863859 - 26863912
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||| |||||||| ||| ||||||||||| || |||||||||||||||    
T  26863859 aggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtcc 26863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 37396899 - 37396846
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||    
T  37396899 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcct 37396846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 48589021 - 48588968
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||| || |||||| ||||||||| ||||||||||    
T  48589021 aggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtcc 48588968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 24609919 - 24609971
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtcc 24609971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 24611177 - 24611088
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaatgnnnnnnngaatttcatccctgcaaa 635  Q
    ||||||||||||||||||| ||| || ||||||   |||||||||||||||| |||||||||||        ||||||||||||||||||    
T  24611177 aggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaatttcatccctgcaaa 24611088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 35721098 - 35721162
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  35721098 ataggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaaaa 35721162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 23292576 - 23292639
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    |||||||||||||| |||||||||  | ||||||||  |||||||  |||||||||||||||||    
T  23292576 ataggctaaaatatatttttgatcatttcaaatataacgagtttggattttggtcctggtaaaa 23292639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 581
Target Start/End: Original strand, 46073879 - 46073918
Alignment:
Q  542 taaataggctaaaatatgtttttgatccatgcaaatatag 581  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  46073879 taaataggctaaaatatgcttttgatccctgcaaatatag 46073918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 11710552 - 11710614
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||||||| || |||||||  ||| ||| |||||||| ||||||||||    
T  11710552 aggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaaaa 11710614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 47038865 - 47038927
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||  ||| |||||||||||  |||||| |||||||| ||||||||||    
T  47038865 aggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaaaa 47038927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 37395632 - 37395685
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||||    
T  37395632 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtcc 37395685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 48334194 - 48334141
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    ||||||||||||||| ||||| ||| | ||||||||| || |||||||||||||    
T  48334194 ataggctaaaatatgcttttggtccctacaaatatagcgaatttgagttttggt 48334141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 11711312 - 11711252
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 608  Q
    |||||||||||||||||| ||| ||||||||||| || |||| |||| |  ||||||||||    
T  11711312 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgggtttggtccctggtaaaa 11711252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Complemental strand, 23470028 - 23469988
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 588  Q
    |||||||||||||||||| ||| ||||||||||| ||||||    
T  23470028 ggctaaaatatgtttttggtccctgcaaatatagcgagttt 23469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 34934808 - 34934744
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc-tggtaaaat 609  Q
    |||||||||||||| ||||  ||| ||||||||||| || |||| |||||||||| |||||||||    
T  34934808 taggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaaaat 34934744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 1974211 - 1974159
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  1974211 ggctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtcc 1974159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 34995111 - 34995175
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 608  Q
    ||||||||||||||| ||||||||| ||||||||||| || |||||||||||| |||||||||||    
T  34995111 ataggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaaaa 34995175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 17517370 - 17517307
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||||| ||| ||||||||| | |||||||||||||||| ||||||||||    
T  17517370 taggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaaaa 17517307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 34998202 - 34998139
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||    
T  34998202 taggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 34998139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 608
Target Start/End: Complemental strand, 3279555 - 3279497
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 608  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||    
T  3279555 taaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggtaaaa 3279497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 608
Target Start/End: Original strand, 18810532 - 18810593
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 18810593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 600
Target Start/End: Original strand, 17516164 - 17516214
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtcc 17516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 20897556 - 20897495
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||| ||||| ||| |||||||||||||| |||| |||||||| ||||||||||    
T  20897556 ggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaaaa 20897495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 600
Target Start/End: Original strand, 21165237 - 21165298
Alignment:
Q  539 ttataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||| || |||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||    
T  21165237 ttatatattggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtcc 21165298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 16995450 - 16995512
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  16995450 aggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaaaa 16995512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 1171707 - 1171658
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||||||||||  |||||||  |||||||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtcc 1171658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 20391217 - 20391266
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||| ||||| ||| |||||||||||||| |||| ||||||||||    
T  20391217 taaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtcc 20391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 595
Target Start/End: Original strand, 20895960 - 20896005
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 595  Q
    |||||||||||||||| ||| ||||||||||| || ||||||||||    
T  20895960 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagtttt 20896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 29291358 - 29291411
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||| ||||| ||| ||||||||| | ||||||| ||||||||||    
T  29291358 aggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtcc 29291411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 599
Target Start/End: Complemental strand, 30253596 - 30253547
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 599  Q
    |||||||||||||||| ||| |||||||| || |||| ||||||||||||    
T  30253596 ctaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggtc 30253547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 17000336 - 17000284
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||  ||||| ||| ||||||| ||||||||||| ||||||||||    
T  17000336 ggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtcc 17000284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 609
Target Start/End: Complemental strand, 22534782 - 22534719
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaat 609  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||    
T  22534782 aggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaat 22534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 600
Target Start/End: Original strand, 3483635 - 3483685
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtcc 3483685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 600
Target Start/End: Original strand, 38455449 - 38455499
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  38455449 ctaaaatatgtttttggtccttgcaaatatagtgaatttgagttttggtcc 38455499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 608
Target Start/End: Original strand, 28996835 - 28996895
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 28996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 28998052 - 28998000
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||    
T  28998052 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtcc 28998000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 10717119 - 10717182
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  10717119 taggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 10717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 600
Target Start/End: Complemental strand, 10718510 - 10718455
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||    
T  10718510 ataggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtcc 10718455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 36588221 - 36588283
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  36588221 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaaaa 36588283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 30124284 - 30124221
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| ||||| ||| |||||||| ||  ||||||||||||||| ||||||||||    
T  30124284 taggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggtaaaa 30124221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 38658479 - 38658542
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||| || || ||||||||||||||| || |||| |||||||| ||||||||||    
T  38658479 taggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaaaa 38658542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 600
Target Start/End: Complemental strand, 39440480 - 39440429
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 39440429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 600
Target Start/End: Complemental strand, 45518022 - 45517967
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||| ||||||||||    
T  45518022 ataggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtcc 45517967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 601
Target Start/End: Original strand, 6783577 - 6783631
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    ||||||||||||||||||| ||  ||||||||| |||| ||||| ||||||||||    
T  6783577 aggctaaaatatgtttttggtcactgcaaatatggtgaatttgaattttggtcct 6783631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 589
Target Start/End: Complemental strand, 1420501 - 1420460
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttg 589  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttg 1420460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 14197824 - 14197877
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||| ||||||||| | |||||||  |||||||||    
T  14197824 aggctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtcc 14197877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 41354472 - 41354533
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaat 609  Q
    ||||||||||||||||| ||| |  |||||||| |||||||| |||||| ||||||||||||    
T  41354472 gctaaaatatgtttttggtccttataaatatagcgagtttgaattttggttcctggtaaaat 41354533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 608
Target Start/End: Original strand, 45516389 - 45516458
Alignment:
Q  540 tataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc-ctggtaaaa 608  Q
    |||||| || |||||||||||||||  |||||| |||||||| || |||| ||||||||| |||||||||    
T  45516389 tataaaaagactaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggtaaaa 45516458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 4184038 - 4183986
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||  ||| ||||||||||||| ||||| ||||||||||    
T  4184038 ggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtcc 4183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 595
Target Start/End: Original strand, 30123151 - 30123199
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 595  Q
    ||||||||||||||||||| ||||| ||||||||| || |||| |||||    
T  30123151 aggctaaaatatgtttttggtccatacaaatatagcgaatttgggtttt 30123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 41357435 - 41357375
Alignment:
Q  538 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    ||||| || ||| ||||||||||||||| |||  |||||||| ||||||||| ||||||||    
T  41357435 attatcaaaaggttaaaatatgtttttggtcctcgcaaatatggtgagtttgggttttggt 41357375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 19674412 - 19674466
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  19674412 taggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtcc 19674466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 601
Target Start/End: Complemental strand, 29060942 - 29060888
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||    
T  29060942 aggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtcct 29060888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 33137288 - 33137226
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||    
T  33137288 aggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaaaa 33137226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 601
Target Start/End: Original strand, 41933808 - 41933871
Alignment:
Q  538 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||| ||||||||||||||||| ||||| ||  ||||||||||| ||||||| |||||||||||    
T  41933808 attaaaaataggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtcct 41933871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 3879084 - 3879138
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  |||||||||    
T  3879084 taggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtcc 3879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 42358031 - 42358093
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||||||| ||| |||||||||||  ||||||||||||| | ||||||||||    
T  42358031 aggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggtaaaa 42358093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 3880556 - 3880503
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| | | ||||||||||| ||||||| ||||||||||    
T  3880556 aggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtcc 3880503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 608
Target Start/End: Original strand, 22204055 - 22204116
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  22204055 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 22204116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 42359405 - 42359344
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||||||||| ||| ||||||||||| |||||||  ||||||| ||||||||||    
T  42359405 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaaaa 42359344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 32699373 - 32699321
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||| ||| || |||||||| ||||||| ||||||||||    
T  32699373 ggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtcc 32699321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 598
Target Start/End: Original strand, 38166493 - 38166545
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||  |||||||    
T  38166493 taggctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggt 38166545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 45618283 - 45618346
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||| ||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  45618283 taggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 45618346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 41935126 - 41935068
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaat 609  Q
    ||||||||||||||| ||| ||||||||||  ||||||| ||||||||| | |||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcttagtaaaat 41935068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 598
Target Start/End: Original strand, 44705299 - 44705349
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 598  Q
    |||||||||||||||||| ||  |||||||||||||| |||| ||||||||    
T  44705299 ggctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggt 44705349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 599
Target Start/End: Original strand, 16916069 - 16916118
Alignment:
Q  550 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 599  Q
    |||||||||  ||||| ||| ||||||||| |||||||||||||||||||    
T  16916069 ctaaaatatacttttggtccctgcaaatatggtgagtttgagttttggtc 16916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 579
Target Start/End: Original strand, 33134889 - 33134922
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatat 579  Q
    |||||||||||||||||||||||| |||||||||    
T  33134889 taggctaaaatatgtttttgatccctgcaaatat 33134922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 30091117 - 30091053
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc-tggtaaaa 608  Q
    ||||||||||||||| ||||| |||||||||||||   |||||| ||||||| ||| ||||||||    
T  30091117 ataggctaaaatatggttttggtccatgcaaatatgacgagtttaagttttgatccatggtaaaa 30091053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 54121762 - 54121698
Alignment:
Q  545 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    ||||||||||||||| ||||| ||| ||||||||  | ||||||| |||||||| ||||||||||    
T  54121762 ataggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggtaaaa 54121698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 490 - 429
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 374335 - 374387
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  374335 ggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcc 374387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 345958 - 345904
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||||||||| ||| ||||||||||| || |||| ||||||||||    
T  345958 taggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtcc 345904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 595
Target Start/End: Complemental strand, 376430 - 376381
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 595  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| |||||    
T  376430 taggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 9920 - 9974
Alignment:
Q  546 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  |||||||||    
T  9920 taggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtcc 9974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 10315 - 10368
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 601  Q
    |||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||    
T  10315 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcct 10368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 11582 - 11529
Alignment:
Q  547 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||||    
T  11582 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtcc 11529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 119593 - 119645
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    |||||||||||| ||||| ||| ||||||||||| || |||||||||||||||    
T  119593 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcc 119645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 121044 - 120983
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 608  Q
    |||||||||||| ||||| ||| ||||||||||  ||||||| |||||||| ||||||||||    
T  121044 ggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaaaa 120983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 600
Target Start/End: Complemental strand, 42813 - 42762
Alignment:
Q  549 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 42762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 1863 - 1908
Alignment:
Q  551 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttg 596  Q
    ||||||||| ||||| ||| ||||||||||| ||||||||||||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttg 1908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 1194 - 1142
Alignment:
Q  548 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 600  Q
    ||||||||||| |||||| ||  ||||||||| | ||||||||||||||||||    
T  1194 ggctaaaatatatttttggtctctgcaaatatggcgagtttgagttttggtcc 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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