View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14257_high_11 (Length: 318)
Name: NF14257_high_11
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 37685691 - 37685569
Alignment:
| Q |
18 |
atgatattataatggcaacgtcatatacaattctagaataattgtgttcaagacattttatgttttcattgcgtgtttaaagaaaactcaaagacgcaaa |
117 |
Q |
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| T |
37685691 |
atgatattataatggcaacgtcatatacaattctagaataattgtgttcaagacattt-atgttttcattgcgtgtgtaaagaaaactcaaagacgcaaa |
37685593 |
T |
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| Q |
118 |
tcaagcggcttccttatattgttt |
141 |
Q |
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| T |
37685592 |
tcaagcggcttccttatattgttt |
37685569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 139 - 306
Target Start/End: Complemental strand, 37685520 - 37685352
Alignment:
| Q |
139 |
tttcctgcataattctgtaggcttttgggagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggga-nnnnnnnnn |
237 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37685520 |
tttcctgcataattttgtaggcttttggtagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgagggatttttttttt |
37685421 |
T |
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| Q |
238 |
nnnnnnnnatagtttattcctttgtaactgataatatttgtgggttgttcctttttcttttggaatttt |
306 |
Q |
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| T |
37685420 |
atttttttttagtttattcctttgtaactgataatatttgtgggttgttcctttttcttttggattttt |
37685352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 46884924 - 46884984
Alignment:
| Q |
247 |
tagtttattcctttg-taactgataatatttgtgggttgttcctttttcttttggaatttt |
306 |
Q |
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| T |
46884924 |
tagtttattccttttataactgataatatttgtggattgttcttttttcttttggaatttt |
46884984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 7498070 - 7498192
Alignment:
| Q |
18 |
atgatattataatggcaacgtcatatacaattctagaataattgtgttcaagacattttatgttttcattgcgtgtttaaagaaaactcaaagacgcaaa |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
7498070 |
atgatattataatggcaacttcatatacaattctagaataattgtgttcaagacattt-atgttttcattgcgtgtgtaaagaaaactcatagacgcaaa |
7498168 |
T |
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| Q |
118 |
tcaagcggcttccttatattgttt |
141 |
Q |
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| T |
7498169 |
tcaagcggcttccttatattgttt |
7498192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 139 - 305
Target Start/End: Original strand, 7498245 - 7498408
Alignment:
| Q |
139 |
tttcctgcataattctgtaggcttttgggagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgagggannnnnnnnnn |
238 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7498245 |
tttcctgcagaattctgtaggcttttggtagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggg---gttttttt |
7498341 |
T |
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| Q |
239 |
nnnnnnnatagtttattcctttgtaactgataatatttgtgggttgttcctttttcttttggaattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7498342 |
tttttttttagtttattcctttgtaactgataatatttgtgggttgttcctttttcttttggaattt |
7498408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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