View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14257_high_4 (Length: 457)
Name: NF14257_high_4
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 39182127 - 39182551
Alignment:
| Q |
18 |
cattttatgtctcttaagcaatggtgagatatacacatcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcaca |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182127 |
cattttaagtctcttaagcaatggtgagatatacacatcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcaca |
39182226 |
T |
|
| Q |
118 |
tgtaaacccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgccagtagtttttgccagtggcatgcggtcacatgatca |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
39182227 |
tgtaaatccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgccagtagtgtttgccagtggcatgcgttcacatgatca |
39182326 |
T |
|
| Q |
218 |
gatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182327 |
gatcagtagtaatattcaacttcgccggctgcaaaaaaaaaaaaaaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaa |
39182426 |
T |
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| Q |
318 |
gatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtggagt |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39182427 |
gatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgaagt |
39182525 |
T |
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| Q |
418 |
ctaacctccaagatttttgccgcgat |
443 |
Q |
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| T |
39182526 |
ctaacctccaagatttttgccgcgat |
39182551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 2103574 - 2103302
Alignment:
| Q |
18 |
cattttatgtctcttaagcaatggtgagatataca----catcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgt |
113 |
Q |
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||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
2103574 |
cattttaagcctcttaagcaatggtgggatatacatacacatcatggcatgttcaaattgacaaaattgtaaacaacattcgacctttgacatggagtgt |
2103475 |
T |
|
| Q |
114 |
cacatgtaaacccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgccagtagtttttgccagtggcatgcggtcacatg |
213 |
Q |
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| T |
2103474 |
ctcatgtacatccccctaaatgcgaaactagtaggcacaaactaaataagaaaagtaacatagttgccaata-attttgacagtggcatgctgtcacatg |
2103376 |
T |
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| Q |
214 |
atcagatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgt |
290 |
Q |
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| T |
2103375 |
atcttatcagtagtaatattcaacttcgccggctgca--aaaagaaaa-aaaatatagaatgcattaaaacttgtgt |
2103302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 290 - 443
Target Start/End: Complemental strand, 2103243 - 2103088
Alignment:
| Q |
290 |
tatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaac |
389 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2103243 |
tatccattgcaaccaaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaac |
2103144 |
T |
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| Q |
390 |
ctataagaactc--aaaagtcttgtggagtctaacctccaagatttttgccgcgat |
443 |
Q |
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| T |
2103143 |
caataagaactcagaaaagtcttgtgaagtctaacctccaagatttttgccacgat |
2103088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 2049432 - 2049367
Alignment:
| Q |
55 |
tcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcacatgt |
120 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
2049432 |
tcatggcatgttcaaaataacaaaattgtaaacaacatttgacctttgatattcagtgtcacatgt |
2049367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 2055531 - 2055472
Alignment:
| Q |
55 |
tcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtca |
115 |
Q |
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| T |
2055531 |
tcatggcatgttcaaatt-acaaaattgtaaacaacaattgacctttgacatgcattgtca |
2055472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 2042801 - 2042750
Alignment:
| Q |
58 |
tggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgca |
109 |
Q |
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||||| || |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
2042801 |
tggcacgtacaaattgatgaaattgtaaacaacatttgacctttgacatgca |
2042750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2099517 - 2099470
Alignment:
| Q |
169 |
taacatagttgccagtagtttttgccagtggcatgcggtcacatgatc |
216 |
Q |
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|||||||||||||| ||||||||| ||||||||||| |||| |||||| |
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| T |
2099517 |
taacatagttgccaatagtttttgacagtggcatgctgtcagatgatc |
2099470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 2059689 - 2059635
Alignment:
| Q |
58 |
tggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtg |
112 |
Q |
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|||||| |||||||| |||| |||||||||||||||| || ||||||||| |||| |
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| T |
2059689 |
tggcatattcaaattaacaatattgtaaacaacatttaacctttgacatgtagtg |
2059635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 2089232 - 2089187
Alignment:
| Q |
169 |
taacatagttgccagtagtttttgccagtggcatgcggtcacatga |
214 |
Q |
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|||||||||||||| ||||||||| ||||||||||| |||| |||| |
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| T |
2089232 |
taacatagttgccaatagtttttgacagtggcatgctgtcatatga |
2089187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 2099631 - 2099582
Alignment:
| Q |
59 |
ggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgc |
108 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||||||| |||||||||| |
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|
| T |
2099631 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgc |
2099582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 2089337 - 2089273
Alignment:
| Q |
59 |
ggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcacatgtaaa |
123 |
Q |
| |
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|||||||||||||| |||| ||| |||||| ||||||| ||||||||||| ||||||| |||| |
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|
| T |
2089337 |
ggcatgttcaaatttacaatattacaaacaatatttgacctttgacatgcatggtcacatataaa |
2089273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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