View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14257_low_10 (Length: 334)
Name: NF14257_low_10
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 28436148 - 28436279
Alignment:
| Q |
3 |
aaggcactcgcatataacgttctctcaacttacaactaaagtaggtagaatcaaagtcaatattttaataatgtgacattttctaattgatagacagttt |
102 |
Q |
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| T |
28436148 |
aaggcactcgcatataacgttctctcaacttacaactaaagtaggtagaatcaaagtcaatattttaataatgtgacattttctaattgatagacagttt |
28436247 |
T |
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| Q |
103 |
gaaaaacatgggtttaaaaaggtagagaattg |
134 |
Q |
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| T |
28436248 |
gaaaaacatgggtttcaaaaggtagagaattg |
28436279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 28436357 - 28436458
Alignment:
| Q |
216 |
cgtaaaaatttatattgtagtatgggatcattgggtggaagtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctcctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28436357 |
cgtaaaaatttatattgtagtatgggatcattgggtggaagtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctcctt |
28436456 |
T |
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| Q |
316 |
cg |
317 |
Q |
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|| |
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| T |
28436457 |
cg |
28436458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 28486252 - 28486313
Alignment:
| Q |
255 |
agtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctccttc |
316 |
Q |
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| T |
28486252 |
agtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttc |
28486313 |
T |
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