View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14257_low_3 (Length: 483)
Name: NF14257_low_3
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 32 - 470
Target Start/End: Original strand, 7913588 - 7914027
Alignment:
| Q |
32 |
cttaaaggaatatggattgctgcctaacaattcaactaagttgtatgttgactatgattaatccatccgtatcaatttcttcaagtcatcaaacttgatt |
131 |
Q |
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| T |
7913588 |
cttaaaggaatatggattactgcataacaattcaactaagttgtatgttgactataattaatccatccctatcaatttcttcaagtcatcaaacttgatt |
7913687 |
T |
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| Q |
132 |
ttcttcaaaggttttgtgagtataccagctaattgtatattagtatgttgaggtactcaagtttcaacttctactaatgtacttggtctcgagtttcaat |
231 |
Q |
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| T |
7913688 |
ttcttcaaaggttttgtgagtataccagctaattgtatattagtatgttgcggtactcaagtttcaacttctactaatgtacttggtctcgagtttcaat |
7913787 |
T |
|
| Q |
232 |
ttcgtttctatatgcttgctcctaccatgactaacgtgat-cttggctgaatcaattgttgatttgttatctacaaatagttccattcttatagcaacat |
330 |
Q |
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||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7913788 |
ttcttttctatatgcttgctcctaccatgactcacgtgatgcttggctgaatcaattgttgatttgttatctacaaatagttccattcttatagcaacat |
7913887 |
T |
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| Q |
331 |
tccaatccataatctttgacatgatacaactgaagttgccacatattttacttcacatgaggataaagcaacattatttatcctcattagcatctttagt |
430 |
Q |
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| T |
7913888 |
tccaatccataatctttgacatgatacaattgaagttgccacatattttacttcgcatgaggataaagcaacattatttatcctcattagcatctttagt |
7913987 |
T |
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| Q |
431 |
aagctttgatccaatatccattggtgtcacaactgcattt |
470 |
Q |
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| T |
7913988 |
aagctttgatccaatatccattggtgtcacaactgcattt |
7914027 |
T |
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