View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14257_low_7 (Length: 422)
Name: NF14257_low_7
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 23553860 - 23553472
Alignment:
| Q |
17 |
cacagaacctaaaacttaacgaacaaaacctacataaaactcacagttcagagaaaaggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23553860 |
cacagaacctaaaacttaatgaacaaaacctacataaaactcacagttcagagaa--ggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
23553763 |
T |
|
| Q |
117 |
tggcatatgaaaccacaaattagtatgcgtcgtgtgtgtttacaactccgattaaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23553762 |
tggcatatgaaaccacaaattagaatgcgtcgtgtgtgtttacaacaccgatttaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
23553663 |
T |
|
| Q |
217 |
tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggtcgatggccat |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23553662 |
tttgtcgtggttgaaatctccgtgtgcggtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggccgatggccat |
23553563 |
T |
|
| Q |
317 |
gccatttgaaagatcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagct |
407 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23553562 |
gccatttgaaaaagcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagct |
23553472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 23306435 - 23306392
Alignment:
| Q |
19 |
cagaacctaaaacttaacgaacaaaacctacataaaactcacag |
62 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
23306435 |
cagaacctaaaacttaaccaacaaagcctacatcaaactcacag |
23306392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 23306321 - 23306235
Alignment:
| Q |
179 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtg |
264 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
23306321 |
atcagtgtgcagcgtgttcgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtg |
23306235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University