View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14257_low_9 (Length: 352)
Name: NF14257_low_9
Description: NF14257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14257_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 45666653 - 45666311
Alignment:
| Q |
1 |
tacctctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaa |
100 |
Q |
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| T |
45666653 |
tacctctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaa |
45666554 |
T |
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| Q |
101 |
aaa-tatttaatgttagagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcatt |
199 |
Q |
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| T |
45666553 |
aaaatatttaatgtt-gagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcatt |
45666455 |
T |
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| Q |
200 |
gtggataagggtgaatcctacgagaagaggatttccattaccctcctcaagaaaggatgttgcatgttcatgagcctctaacagaaagagttcttcggtt |
299 |
Q |
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| T |
45666454 |
gtgaacaagggtgagtcctacgagaagaggatttccattaccctcctcaagaaaggatgctgcatgttcatgagcctctaacagaaagagttcttcagtt |
45666355 |
T |
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| Q |
300 |
tcattgaagaagtgatgttgttgaccataaaccaagttgatgat |
343 |
Q |
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| T |
45666354 |
tcattgaagaagtgatgttgttgaccataaaccaagttgatgat |
45666311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 37973691 - 37973790
Alignment:
| Q |
1 |
tacctctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaa |
100 |
Q |
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||||||||||||||||||||| |||| ||| || ||||| ||||| | | ||||| ||| |||| ||||||||||||||||| ||||| | ||||||| |
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| T |
37973691 |
tacctctaaattaacaagccagctgtttgcaccggatccgtatccgtgatcaaaatgataagcaggcaatgttccatccaagcagactgccaaaaacaaa |
37973790 |
T |
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