View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_high_10 (Length: 451)

Name: NF14258_high_10
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_high_10
NF14258_high_10
[»] chr7 (3 HSPs)
chr7 (9-451)||(47142719-47143165)
chr7 (197-450)||(20070315-20070556)
chr7 (100-179)||(20070200-20070277)
[»] chr1 (5 HSPs)
chr1 (9-451)||(29682178-29682608)
chr1 (197-450)||(25424517-25424770)
chr1 (341-451)||(25242296-25242403)
chr1 (88-179)||(25424391-25424480)
chr1 (50-93)||(25424279-25424322)
[»] chr2 (2 HSPs)
chr2 (197-451)||(22805366-22805621)
chr2 (91-176)||(22805241-22805325)
[»] chr8 (3 HSPs)
chr8 (197-450)||(24031467-24031723)
chr8 (88-176)||(24031764-24031850)
chr8 (50-93)||(24031911-24031954)
[»] chr5 (3 HSPs)
chr5 (319-438)||(18810504-18810620)
chr5 (47-93)||(22304601-22304647)
chr5 (261-346)||(19009578-19009663)


Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 47142719 - 47143165
Alignment:
Q  9 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47142719 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtatttgaaaacaagaacagaaactacgaa 47142818  T
Q  109 ttcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagttnnnnnnnnnnng----caacaacgtttat 204  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||                ||||||||||| |    
T  47142819 ttcaaaaatataaattggggcggtttctgtttgcctcgcagaacaatttgcaaattaagagagattcagttaaaaaaaaaaaaacaacaacaacgtttgt 47142918  T
Q  205 tctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagttttatacaaatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  47142919 tctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgattgattataaaactaactaaacaagcgataattagttttatacaaatt 47143018  T
Q  305 ccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaataaatgttat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47143019 ccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaattaatatcataacagagttcaataaatgttat 47143118  T
Q  405 atgctaagcgccataacctatatcaatttatattcaaactgatttaa 451  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  47143119 atgctaagcgccataacctatatcaatttctattcaaactgatttaa 47143165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 197 - 450
Target Start/End: Original strand, 20070315 - 20070556
Alignment:
Q  197 acgtttattctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagtttta 296  Q
    ||||||||||||||||||||| ||||||||||| |||| | |||||||||||||| ||||| |||||||||||||||||||  ||| |||||||||||||    
T  20070315 acgtttattctttctatcatgagttcttgataaacattgattcacatgtctaaggcctgattgattataaaactaactaaacgagcaataattagtttta 20070414  T
Q  297 tacaaattccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaata 396  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||             ||  |||||| |  ||||||||||| | ||||||     
T  20070415 tacaaattccattcgattaagcatcagaatgtgttcaactaaccatgaaagt------------tagataacacagtttatatcataacaaaattcaatc 20070502  T
Q  397 aatgttatatgctaagcgccataacctatatcaatttatattcaaactgattta 450  Q
    ||| |||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  20070503 aatcttatatgctaagcgtcataacctatatcaatttctattcaaactaattta 20070556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 20070200 - 20070277
Alignment:
Q  100 aactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt 179  Q
    ||||||||||||||||||||||||||||  || || ||||| | | |  |||||| ||||||||||||||||||| ||||    
T  20070200 aactacgaattcaaaaatataaattggg--ggtttttgttttctttatggaacaagttgcaaattaagagagattaagtt 20070277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 29682178 - 29682608
Alignment:
Q  9 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29682178 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 29682277  T
Q  109 ttcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt----nnnnnnnnnnngcaacaacgtttat 204  Q
    ||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||| ||||||||| ||               ||||||||||||||    
T  29682278 ttcaaaaatataaattggggctgtttttgtttgcctcacaaaacaattttcaaattaaaagagattcaattaaaaaaaaaaaaaaagcaacaacgtttat 29682377  T
Q  205 tctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagttttatacaaatt 304  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  29682378 tctttctatcatgggttcttgataagcattcactcacaattataaggtctgattgattataaaactaactaaacaagtgataattagttttatacaaatt 29682477  T
Q  305 ccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaataaatgttat 404  Q
     ||||| ||||||||||| ||||||||||||||||||||                |||||||||||||| |||||||||||| | |||||||||||||||    
T  29682478 tcattcgattaatcatcacaatgtgttcaattaaccatg----------------acagtgaacacaattaatatcataacaaaattcaataaatgttat 29682561  T
Q  405 atgctaagcgccataacctatatcaatttatattcaaactgatttaa 451  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  29682562 atgataagcgccataacctatatcaatttctattcaaactgatttaa 29682608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 197 - 450
Target Start/End: Original strand, 25424517 - 25424770
Alignment:
Q  197 acgtttattctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagtttta 296  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||    
T  25424517 acgtttattctttctatcatgggttcttgctaaacattcattcacatgtctaaggcctgattgattataagactaactaaacaagcgataattaatttta 25424616  T
Q  297 tacaaattccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaata 396  Q
    || ||||||||||| ||||| ||||||||| ||||||| ||||||| | |||| |||||||||||   ||||||| | ||||||| |||||| || |||     
T  25424617 tataaattccattcgattaagcatcagaatttgttcaactaaccatcaaagtgaacaagcgtcacttagaacacagttaatatcaaaacagaatttaatc 25424716  T
Q  397 aatgttatatgctaagcgccataacctatatcaatttatattcaaactgattta 450  Q
    ||| |||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  25424717 aatcttatatgctaagcgtcataacctatatcaatttctattcaaaatgattta 25424770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 451
Target Start/End: Complemental strand, 25242403 - 25242296
Alignment:
Q  341 atgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaataaatgttatatgctaagcgccataacctatatcaatttatattca 440  Q
    |||| |||| ||||| ||||||  ||||||||| |||||||| ||| | |||||| |   |||||||||||||  |||||||||||||||||||||||||    
T  25242403 atgaaagtgaacaagtgtcacatagaacacaattaatatcattacataattcaatca---ttatatgctaagccacataacctatatcaatttatattca 25242307  T
Q  441 aactgatttaa 451  Q
    |||| ||||||    
T  25242306 aactaatttaa 25242296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 25424391 - 25424480
Alignment:
Q  88 aacaagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt 179  Q
    ||||||||||  | |||||||||||||| ||||||||||||  | || ||||||| |||| ||||||||||||| |||||||||||||||||    
T  25424391 aacaagaacatcagctacgaattcaaaagtataaattgggg--gtttttgtttgcttcacggaacaatttgcaatttaagagagattcagtt 25424480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 25424279 - 25424322
Alignment:
Q  50 tgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaag 93  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||    
T  25424279 tgatcattgtcgtgcacgatcaaaaataagtattttaaaacaag 25424322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 197 - 451
Target Start/End: Original strand, 22805366 - 22805621
Alignment:
Q  197 acgtttattctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagtttta 296  Q
    |||||||||| |||||||| |||||||||||||  ||||| ||| ||||| || | ||||| |||||||||||||| |||| ||||| |||||| |||||    
T  22805366 acgtttattccttctatcacgggttcttgataaagattcattcagatgtcaaaagcctgattgattataaaactaagtaaacaagcggtaattaatttta 22805465  T
Q  297 tacaaattccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaata 396  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| |||||||||||   ||||||| | |||||||||||||| ||||||     
T  22805466 tacaaattccattcgattaagcatcagaatgtgttcaactaaccatgagagtgaacaagcgtcacttagaacacagttaatatcataacagaattcaatc 22805565  T
Q  397 aatgttatatgctaagcgccataacctatatc-aatttatattcaaactgatttaa 451  Q
    ||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  22805566 aatcttatatgctaagtgccataacctatatcaaatttctattcaaactgatttaa 22805621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 22805241 - 22805325
Alignment:
Q  91 aagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattca 176  Q
    |||||||| | ||| ||||||||||||||||||||||| || || ||||||| |||| |||||| |||||||||| |||| |||||    
T  22805241 aagaacagcagctatgaattcaaaaatataaattgggg-gggttttgtttgcttcacggaacaacttgcaaattaggagaaattca 22805325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 197 - 450
Target Start/End: Complemental strand, 24031723 - 24031467
Alignment:
Q  197 acgtttattctttctatcatgggttcttgataagcattcactcacatgtctaaggtctgatagattataaaactaactaaataagcgataattagtttta 296  Q
    |||||||||| ||||||||||||||||||||||  ||||| ||||||||| |||| ||||| |||||||||||||| |||| |||| ||||||| |||||    
T  24031723 acgtttattccttctatcatgggttcttgataaagattcattcacatgtcaaaggcctgattgattataaaactaagtaaacaagccataattaatttta 24031624  T
Q  297 tacaaattccattctattaatcatcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatc---ataacagagttca 393  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| |||||||||||   ||||||| | ||||||   |||||||| ||||    
T  24031623 tacaaattccattcgattaagcatcagaatgtgttcaactaaccatgagagtgaacaagcgtcacttagaacacagttaatatcataataacagaattca 24031524  T
Q  394 ataaatgttatatgctaagcgccataacctatatcaatttatattcaaactgattta 450  Q
    || ||| ||||||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  24031523 atcaatcttatatgataagcgccataaggtatatcaatttctattcaaactgattta 24031467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 24031850 - 24031764
Alignment:
Q  88 aacaagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattca 176  Q
    ||||||||||| | ||| ||||||||||||||||||||||  || || ||||||| |||| |||||| |||||||||| |||| |||||    
T  24031850 aacaagaacagcagctatgaattcaaaaatataaattggg--gggttttgtttgcttcacggaacaacttgcaaattaggagaaattca 24031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 24031954 - 24031911
Alignment:
Q  50 tgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaag 93  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  24031954 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaag 24031911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 438
Target Start/End: Complemental strand, 18810620 - 18810504
Alignment:
Q  319 atcagaatgtgttcaattaaccatgacagtggacaagcgtcacagtgaacacaatcaatatcataacagagttcaataaatgttatatgctaagcgccat 418  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||   ||||  || ||| |||||||| |||||||  |||  ||   ||||||||||||    
T  18810620 atcagaatgtgttcaattaaccatggcagtgaacaagcgtcacaaataacatgattaatgtcataacatagttcaagcaatacta---gctaagcgccat 18810524  T
Q  419 aacctatatcaatttatatt 438  Q
    ||| | ||||||||| ||||    
T  18810523 aacatgtatcaatttttatt 18810504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 22304647 - 22304601
Alignment:
Q  47 ttttgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaag 93  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||    
T  22304647 ttttgatcgttgtcgtggacgatcaaaaataagtattttaaaacaag 22304601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 19009663 - 19009578
Alignment:
Q  261 ttataaaactaactaaataagcgataattagttttatacaaattccattctattaatcatcagaatgtgttcaattaaccatgaca 346  Q
    ||||| || |||||||| || ||  |||||||||||| | |||||||||  ||||| ||||||||| ||||  |||||||||||||    
T  19009663 ttatagaattaactaaacaatcgtcaattagttttatgcgaattccatttgattaagcatcagaatatgttagattaaccatgaca 19009578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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