View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_12 (Length: 443)
Name: NF14258_high_12
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 13444467 - 13444052
Alignment:
| Q |
17 |
gaagctgagagtcgaatatggggtgccttgatcccctcattgagggaaactaacacactgcctttaaaattagccgagcagaggttggacattgtggcca |
116 |
Q |
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| T |
13444467 |
gaagctaagagtcgaacgtggggtgccttgatcccctcattgagggaaactaacacactgcctttaaaattagccgagtagaggttggacattgtggcca |
13444368 |
T |
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| Q |
117 |
tattgtttgactaatagtaataaattt-accgataaatactcattttctaaattgtattacacatattcaatnnnnnnncaaagttaattttttgcaaac |
215 |
Q |
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| T |
13444367 |
tgttgtttgactagtagaaataatttttaccgataaatactcattttctaaattgtattacacatattcaataaaaaa-caaagttaattttttgcaaac |
13444269 |
T |
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| Q |
216 |
acgttttagacatgtctttattgctacaaaatgcaaacattcaaagagaaaaggtatcattttctttaacaa--gaggtcacttgcgcatgaatttgtac |
313 |
Q |
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| T |
13444268 |
acgttttagacatgtctttattgctacaaaatgcaaacattcaaagagaaatggtatcattttctttaacaaaagaggtcacttgaacatgaatttgttc |
13444169 |
T |
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| Q |
314 |
tcaagtatctatttaaagaaggtttacacattacttgatgtcaggtcctctgactaaagataattgtgatattagattagattgaggagaggcagatcaa |
413 |
Q |
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| T |
13444168 |
tcaaatatctatttaaagaaggtttatacattacttgatttcaagtcctctgattaaagataattgtgatagtagatcagatggaggagagtcaaatcaa |
13444069 |
T |
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| Q |
414 |
aagagatagaggaaaac |
430 |
Q |
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| T |
13444068 |
aagaggtagaggaaaac |
13444052 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 30508526 - 30508471
Alignment:
| Q |
227 |
atgtctttattgctacaaaatgcaaacattcaaagagaaaaggtatcattttcttt |
282 |
Q |
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| T |
30508526 |
atgtcttcattcctacaaaatgaaaacattcaaagagaaaaggtataattttcttt |
30508471 |
T |
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