View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_high_17 (Length: 365)

Name: NF14258_high_17
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_high_17
NF14258_high_17
[»] chr7 (4 HSPs)
chr7 (8-359)||(27091555-27091906)
chr7 (8-359)||(27186395-27186746)
chr7 (98-153)||(37233414-37233469)
chr7 (167-220)||(34925253-34925306)
[»] chr1 (3 HSPs)
chr1 (177-233)||(7210555-7210611)
chr1 (98-163)||(46937567-46937632)
chr1 (165-225)||(15707550-15707610)
[»] chr2 (5 HSPs)
chr2 (178-221)||(35849470-35849513)
chr2 (173-221)||(24098474-24098522)
chr2 (151-206)||(32429393-32429449)
chr2 (165-221)||(35840642-35840698)
chr2 (103-163)||(41012707-41012767)
[»] scaffold0137 (1 HSPs)
scaffold0137 (177-223)||(36029-36075)
[»] chr3 (4 HSPs)
chr3 (134-206)||(24870752-24870827)
chr3 (177-223)||(3924119-3924165)
chr3 (167-223)||(26290148-26290204)
chr3 (180-224)||(50376173-50376217)
[»] chr8 (1 HSPs)
chr8 (178-221)||(26480718-26480761)
[»] chr5 (3 HSPs)
chr5 (178-224)||(41991284-41991330)
chr5 (167-224)||(38516599-38516656)
chr5 (149-224)||(13619017-13619093)
[»] chr6 (1 HSPs)
chr6 (178-219)||(7939972-7940013)
[»] chr4 (1 HSPs)
chr4 (165-222)||(13485392-13485449)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 27091555 - 27091906
Alignment:
Q  8 atcaattttatttgtgcaattattgtcgaggttgtattagccaatattgttagataacaactatagtggtgcaatagcgttaaagcataacggagtttga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27091555 atcaattttatttgtgcaattattgtcgaggttgtattagccaatattgttagataacaactatagtggtgcaatagcgttaaagcataacggagtttga 27091654  T
Q  108 acaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtgttatagcgtagcaaaatttgatcaaaccgctattttccacaatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27091655 acaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtgttatagcgtagcaaaatttgatcaaaccgctattttccacaatc 27091754  T
Q  208 tgtaattgacaacactggtatcaatcatattttaacaaatcatccatatgtaaagtaatatctatatataaaattcttatcatagattgaaatgtcttat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27091755 tgtaattgacaacactggtatcaatcatattttaacaaatcattcatatgtaaagtaatatctatatataaaattcttaacatagattgaaatgtcttat 27091854  T
Q  308 ttatttccctagagttggaactccaaattaatctaaagtgttgggaaagagc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27091855 ttatttccctagagttggaactccaaattaatctaaagtgttgggaaagagc 27091906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 27186746 - 27186395
Alignment:
Q  8 atcaattttatttgtgcaattattgtcgaggttgtattagccaatattgttagataacaactatagtggtgcaatagcgttaaagcataacggagtttga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27186746 atcaattttatttgtgcaattattgtcgaggttgtattagccaatattgttagataacaactatagtggtgcaatagcgttaaagcataacggagtttga 27186647  T
Q  108 acaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtgttatagcgtagcaaaatttgatcaaaccgctattttccacaatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27186646 acaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtgttatagcgtagcaaaatttgatcaaaccgctattttccacaatc 27186547  T
Q  208 tgtaattgacaacactggtatcaatcatattttaacaaatcatccatatgtaaagtaatatctatatataaaattcttatcatagattgaaatgtcttat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27186546 tgtaattgacaacactggtatcaatcatattttaacaaatcattcatatgtaaagtaatatctatatataaaattcttaacatagattgaaatgtcttat 27186447  T
Q  308 ttatttccctagagttggaactccaaattaatctaaagtgttgggaaagagc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27186446 ttatttccctagagttggaactccaaattaatctaaagtgttgggaaagagc 27186395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 37233414 - 37233469
Alignment:
Q  98 cggagtttgaacaaagtgttattgttcaatgatgcactatttaatgcaaaatattg 153  Q
    |||| |||||||||| ||||||||||| | ||| ||||||||||| ||||||||||    
T  37233414 cggaatttgaacaaattgttattgttctacgatacactatttaatacaaaatattg 37233469  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 34925306 - 34925253
Alignment:
Q  167 tagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaac 220  Q
    |||| ||||| ||||||| ||||| |||||||||||| ||||| ||||||||||    
T  34925306 tagcatagcagaatttgaacaaactgctattttccacgatctgcaattgacaac 34925253  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 7210611 - 7210555
Alignment:
Q  177 aaatttgatcaaaccgctattttccacaatctgtaattgacaacactggtatcaatc 233  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||| ||||    
T  7210611 aaatttgagcaaaccactattttccacaatctgcaattgacaacacgggtattaatc 7210555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 46937567 - 46937632
Alignment:
Q  98 cggagtttgaacaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtg 163  Q
    |||| ||||||||||||| ||||||||   ||||| ||||||| | ||||||||||| ||||||||    
T  46937567 cggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatagtg 46937632  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 15707610 - 15707550
Alignment:
Q  165 tatagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaacactgg 225  Q
    |||||| ||||  ||||||| ||||| ||||||||  ||||||||| ||||||||||||||    
T  15707610 tatagcatagcggaatttgaacaaactgctattttttacaatctgtgattgacaacactgg 15707550  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 35849513 - 35849470
Alignment:
Q  178 aatttgatcaaaccgctattttccacaatctgtaattgacaaca 221  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  35849513 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 35849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 24098474 - 24098522
Alignment:
Q  173 agcaaaatttgatcaaaccgctattttccacaatctgtaattgacaaca 221  Q
    |||| ||||||| |||||| |||||||||||||||||| ||||||||||    
T  24098474 agcataatttgaacaaacccctattttccacaatctgtgattgacaaca 24098522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 32429393 - 32429449
Alignment:
Q  151 ttgtcaaatag-tgttatagcgtagcaaaatttgatcaaaccgctattttccacaat 206  Q
    ||||||||||| | ||||||||||||| ||||||| ||||| ||||||||| |||||    
T  32429393 ttgtcaaatagctattatagcgtagcagaatttgaacaaacagctattttcaacaat 32429449  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 35840698 - 35840642
Alignment:
Q  165 tatagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaaca 221  Q
    ||||||| |||  ||||||| ||||| ||||| |||| |||||||||||||||||||    
T  35840698 tatagcgcagcggaatttgaacaaactgctatcttccgcaatctgtaattgacaaca 35840642  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 41012707 - 41012767
Alignment:
Q  103 tttgaacaaagtgttattgttcaatgatgcactatttaatgcaaaatattgtcaaatagtg 163  Q
    |||||||||| |||||||||||   ||| ||||||||| |||||| |||||||| ||||||    
T  41012707 tttgaacaaattgttattgttcctcgatacactatttagtgcaaattattgtcacatagtg 41012767  T

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Target: scaffold0137 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 36075 - 36029
Alignment:
Q  177 aaatttgatcaaaccgctattttccacaatctgtaattgacaacact 223  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||    
T  36075 aaattggaacaaaccgctattttccacaatctgcaattgacaacact 36029  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 24870827 - 24870752
Alignment:
Q  134 ctatttaatgcaaaatattgtcaaatagtg---ttatagcgtagcaaaatttgatcaaaccgctattttccacaat 206  Q
    ||||| |||||||| |||||||||||||||   ||||||| ||||| |||||||  ||||| ||||||||||||||    
T  24870827 ctattgaatgcaaagtattgtcaaatagtggcgttatagcatagcagaatttgaataaaccactattttccacaat 24870752  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 3924165 - 3924119
Alignment:
Q  177 aaatttgatcaaaccgctattttccacaatctgtaattgacaacact 223  Q
    ||||| || |||||| ||||||||||||||||| |||||||||||||    
T  3924165 aaattggaacaaaccactattttccacaatctgcaattgacaacact 3924119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 26290204 - 26290148
Alignment:
Q  167 tagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaacact 223  Q
    |||| ||||| ||||||| || |||||||| |||||||||| || ||||||||||||    
T  26290204 tagcttagcataatttgaacataccgctatattccacaatccgtgattgacaacact 26290148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 50376217 - 50376173
Alignment:
Q  180 tttgatcaaaccgctattttccacaatctgtaattgacaacactg 224  Q
    ||||| ||||||||||||||| || ||||| ||||||||||||||    
T  50376217 tttgaacaaaccgctattttctacgatctgcaattgacaacactg 50376173  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 26480718 - 26480761
Alignment:
Q  178 aatttgatcaaaccgctattttccacaatctgtaattgacaaca 221  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||    
T  26480718 aatttgaacaacccgttattttccacaatctgtaattgacaaca 26480761  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 41991284 - 41991330
Alignment:
Q  178 aatttgatcaaaccgctattttccacaatctgtaattgacaacactg 224  Q
    ||||||| |||||||||||||||  | ||||||||||||||||||||    
T  41991284 aatttgaacaaaccgctattttctgcgatctgtaattgacaacactg 41991330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 38516599 - 38516656
Alignment:
Q  167 tagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaacactg 224  Q
    |||| ||| ||||||||| |||||||||||||||||| ||| | | ||||||||||||    
T  38516599 tagcatagtaaaatttgaacaaaccgctattttccactatccgcagttgacaacactg 38516656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 13619017 - 13619093
Alignment:
Q  149 tattgtcaaatagtgt-tatagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaacactg 224  Q
    ||||||||||||| || ||||| ||||| || ||||| ||||||| | |||||| | ||||| ||||||||||||||    
T  13619017 tattgtcaaatagcgtctatagtgtagctaactttgaacaaaccgttgttttccccgatctgcaattgacaacactg 13619093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 7939972 - 7940013
Alignment:
Q  178 aatttgatcaaaccgctattttccacaatctgtaattgacaa 219  Q
    ||||||||||| || ||||||| |||||||||||||||||||    
T  7939972 aatttgatcaaccccctatttttcacaatctgtaattgacaa 7940013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 13485392 - 13485449
Alignment:
Q  165 tatagcgtagcaaaatttgatcaaaccgctattttccacaatctgtaattgacaacac 222  Q
    |||||| ||| ||||||||| ||||||||| |||||| | |||||| |||||||||||    
T  13485392 tatagcataggaaaatttgaacaaaccgctgttttccgcgatctgtgattgacaacac 13485449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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