View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_high_19 (Length: 333)

Name: NF14258_high_19
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_high_19
NF14258_high_19
[»] chr8 (35 HSPs)
chr8 (17-104)||(2802976-2803063)
chr8 (19-106)||(755900-755987)
chr8 (17-104)||(756085-756172)
chr8 (17-119)||(6041425-6041527)
chr8 (17-119)||(6045062-6045164)
chr8 (41-107)||(14170418-14170484)
chr8 (17-98)||(2802653-2802734)
chr8 (17-98)||(4461679-4461760)
chr8 (17-98)||(26889619-26889700)
chr8 (17-107)||(11289275-11289364)
chr8 (41-105)||(35795583-35795647)
chr8 (45-104)||(45522447-45522506)
chr8 (17-103)||(6041089-6041174)
chr8 (17-103)||(6044721-6044806)
chr8 (42-112)||(44807327-44807397)
chr8 (41-94)||(17512106-17512159)
chr8 (41-90)||(45163712-45163761)
chr8 (42-90)||(23936292-23936340)
chr8 (41-100)||(1003461-1003520)
chr8 (17-104)||(14507930-14508017)
chr8 (45-107)||(8409821-8409882)
chr8 (17-59)||(11288996-11289038)
chr8 (41-107)||(23475620-23475686)
chr8 (45-98)||(29340773-29340826)
chr8 (46-110)||(12280358-12280422)
chr8 (41-104)||(1003797-1003859)
chr8 (55-94)||(27225790-27225829)
chr8 (42-105)||(32498660-32498723)
chr8 (42-104)||(31947853-31947915)
chr8 (42-119)||(17075006-17075083)
chr8 (42-119)||(17573187-17573264)
chr8 (55-104)||(26889292-26889341)
chr8 (42-103)||(45308454-45308515)
chr8 (42-90)||(5916909-5916957)
chr8 (42-90)||(12278848-12278896)
[»] chr1 (34 HSPs)
chr1 (19-108)||(12075244-12075332)
chr1 (17-107)||(12074952-12075042)
chr1 (37-104)||(3815044-3815111)
chr1 (45-112)||(37008208-37008275)
chr1 (22-98)||(23953083-23953159)
chr1 (17-103)||(2350064-2350150)
chr1 (15-82)||(23952718-23952785)
chr1 (41-94)||(40876997-40877050)
chr1 (41-105)||(46895792-46895856)
chr1 (42-90)||(50504803-50504851)
chr1 (45-104)||(367175-367234)
chr1 (41-104)||(7196963-7197026)
chr1 (231-310)||(17056678-17056757)
chr1 (42-104)||(3814759-3814821)
chr1 (41-103)||(7196676-7196738)
chr1 (42-107)||(1712366-1712431)
chr1 (42-103)||(15911955-15912016)
chr1 (42-83)||(50503721-50503762)
chr1 (41-104)||(6129618-6129682)
chr1 (42-90)||(7058376-7058424)
chr1 (38-105)||(366884-366951)
chr1 (41-104)||(15788409-15788472)
chr1 (42-104)||(21258918-21258980)
chr1 (42-104)||(26811452-26811514)
chr1 (41-103)||(40876700-40876762)
chr1 (41-103)||(46895437-46895499)
chr1 (42-104)||(51549393-51549455)
chr1 (46-107)||(4476198-4476259)
chr1 (42-107)||(39276962-39277027)
chr1 (41-94)||(45719701-45719753)
chr1 (42-111)||(52254482-52254551)
chr1 (42-90)||(6606952-6607000)
chr1 (42-82)||(22182668-22182708)
chr1 (42-90)||(41611254-41611302)
[»] chr7 (27 HSPs)
chr7 (17-104)||(282829-282916)
chr7 (17-104)||(327406-327493)
chr7 (41-104)||(7873508-7873571)
chr7 (40-104)||(29933524-29933588)
chr7 (41-112)||(29933181-29933252)
chr7 (41-103)||(10691298-10691360)
chr7 (41-115)||(43078055-43078129)
chr7 (41-115)||(43092032-43092106)
chr7 (45-98)||(9477446-9477499)
chr7 (41-94)||(10691641-10691694)
chr7 (17-60)||(282518-282561)
chr7 (42-105)||(33159482-33159545)
chr7 (42-108)||(21954327-21954393)
chr7 (45-103)||(24679100-24679158)
chr7 (41-106)||(7873883-7873948)
chr7 (42-106)||(18201351-18201415)
chr7 (42-106)||(40139526-40139590)
chr7 (46-113)||(9500159-9500226)
chr7 (45-104)||(30283405-30283464)
chr7 (41-104)||(46199052-46199115)
chr7 (46-104)||(21939331-21939389)
chr7 (45-98)||(9477138-9477191)
chr7 (46-103)||(20505266-20505323)
chr7 (42-103)||(42436829-42436890)
chr7 (42-107)||(42438029-42438094)
chr7 (46-98)||(46265870-46265922)
chr7 (231-310)||(48056766-48056846)
[»] chr5 (19 HSPs)
chr5 (20-106)||(42586318-42586404)
chr5 (17-104)||(42585985-42586072)
chr5 (41-104)||(6464327-6464390)
chr5 (54-106)||(128251-128303)
chr5 (50-114)||(7611063-7611127)
chr5 (41-113)||(20126428-20126500)
chr5 (41-92)||(7611419-7611470)
chr5 (41-84)||(20126670-20126713)
chr5 (41-104)||(36361032-36361095)
chr5 (41-91)||(36361413-36361463)
chr5 (42-104)||(37887671-37887733)
chr5 (42-104)||(38162592-38162654)
chr5 (42-111)||(10169007-10169076)
chr5 (50-111)||(12610236-12610297)
chr5 (46-106)||(22471953-22472013)
chr5 (46-110)||(37897974-37898038)
chr5 (42-70)||(38163668-38163696)
chr5 (42-106)||(38973325-38973388)
chr5 (42-106)||(41138558-41138622)
[»] chr4 (31 HSPs)
chr4 (17-104)||(41148164-41148251)
chr4 (17-104)||(53578883-53578970)
chr4 (22-104)||(41148533-41148615)
chr4 (41-103)||(53831152-53831214)
chr4 (41-98)||(47742596-47742653)
chr4 (42-103)||(30064002-30064063)
chr4 (41-98)||(47742236-47742293)
chr4 (42-84)||(14816860-14816902)
chr4 (41-107)||(19938578-19938644)
chr4 (42-104)||(31760765-31760827)
chr4 (41-98)||(5548005-5548062)
chr4 (41-110)||(30064352-30064421)
chr4 (42-90)||(1139169-1139217)
chr4 (42-106)||(1186655-1186719)
chr4 (46-98)||(37831597-37831649)
chr4 (42-105)||(26858342-26858405)
chr4 (42-105)||(55732940-55733003)
chr4 (42-84)||(1140618-1140660)
chr4 (50-112)||(6033904-6033966)
chr4 (42-84)||(40489230-40489272)
chr4 (45-106)||(3369844-3369905)
chr4 (38-103)||(5547613-5547678)
chr4 (47-88)||(14835585-14835626)
chr4 (50-107)||(19909169-19909226)
chr4 (42-83)||(35901805-35901846)
chr4 (42-107)||(53061801-53061866)
chr4 (42-90)||(6033865-6033913)
chr4 (42-90)||(7472437-7472485)
chr4 (42-90)||(8143046-8143094)
chr4 (42-90)||(19938315-19938363)
chr4 (42-90)||(31761855-31761903)
[»] chr2 (30 HSPs)
chr2 (19-105)||(8030124-8030210)
chr2 (19-103)||(4856709-4856792)
chr2 (41-104)||(14816049-14816112)
chr2 (41-109)||(17850486-17850554)
chr2 (41-109)||(12802456-12802524)
chr2 (42-90)||(28719330-28719378)
chr2 (42-109)||(36286406-36286473)
chr2 (42-104)||(52292-52354)
chr2 (41-103)||(14815698-14815760)
chr2 (42-104)||(23280883-23280945)
chr2 (42-111)||(11188298-11188367)
chr2 (42-103)||(11363882-11363943)
chr2 (42-90)||(21631831-21631879)
chr2 (42-105)||(2755202-2755265)
chr2 (41-104)||(8740153-8740216)
chr2 (42-105)||(14983953-14984016)
chr2 (47-98)||(20662520-20662571)
chr2 (45-104)||(35500347-35500406)
chr2 (42-104)||(3368671-3368733)
chr2 (42-104)||(23048289-23048351)
chr2 (42-103)||(10857339-10857400)
chr2 (42-83)||(16143687-16143728)
chr2 (42-103)||(20480077-20480138)
chr2 (51-115)||(22333336-22333401)
chr2 (42-103)||(32661687-32661748)
chr2 (42-82)||(16144923-16144963)
chr2 (42-82)||(28217125-28217165)
chr2 (42-106)||(36286120-36286184)
chr2 (42-106)||(39374382-39374446)
chr2 (42-90)||(44078542-44078590)
[»] scaffold0017 (1 HSPs)
scaffold0017 (21-93)||(27911-27983)
[»] chr3 (23 HSPs)
chr3 (41-104)||(53255276-53255339)
chr3 (41-103)||(53254963-53255025)
chr3 (41-98)||(51453547-51453603)
chr3 (41-107)||(32831480-32831546)
chr3 (29-98)||(6128492-6128560)
chr3 (41-94)||(37755189-37755242)
chr3 (42-107)||(43001877-43001942)
chr3 (42-90)||(47284544-47284592)
chr3 (42-90)||(51224939-51224987)
chr3 (45-104)||(17258186-17258245)
chr3 (42-105)||(40988596-40988659)
chr3 (45-103)||(2181315-2181373)
chr3 (46-104)||(3193038-3193096)
chr3 (46-104)||(50380154-50380212)
chr3 (42-104)||(50381559-50381621)
chr3 (42-104)||(54476042-54476104)
chr3 (42-83)||(51226503-51226544)
chr3 (42-115)||(54716759-54716832)
chr3 (54-106)||(1807437-1807489)
chr3 (42-90)||(5636660-5636708)
chr3 (42-90)||(17256581-17256629)
chr3 (42-90)||(32772033-32772081)
chr3 (42-90)||(55228059-55228107)
[»] chr6 (18 HSPs)
chr6 (27-83)||(2078186-2078242)
chr6 (42-103)||(28574559-28574620)
chr6 (18-68)||(6499786-6499836)
chr6 (42-103)||(11623159-11623220)
chr6 (38-98)||(2078488-2078548)
chr6 (42-90)||(12203905-12203953)
chr6 (42-90)||(31175549-31175597)
chr6 (42-105)||(4037036-4037099)
chr6 (56-107)||(9070136-9070187)
chr6 (46-105)||(12766471-12766530)
chr6 (41-83)||(10582150-10582192)
chr6 (42-111)||(2017164-2017233)
chr6 (56-105)||(12798725-12798774)
chr6 (42-83)||(22515993-22516034)
chr6 (50-103)||(30369784-30369837)
chr6 (42-90)||(929459-929506)
chr6 (46-90)||(2018574-2018618)
chr6 (50-98)||(7504883-7504931)
[»] scaffold0468 (1 HSPs)
scaffold0468 (41-103)||(10351-10413)
[»] scaffold0005 (2 HSPs)
scaffold0005 (42-84)||(22809-22851)
scaffold0005 (47-88)||(4073-4114)
[»] scaffold2010 (1 HSPs)
scaffold2010 (46-107)||(489-550)
[»] scaffold0854 (1 HSPs)
scaffold0854 (42-90)||(3380-3428)
[»] scaffold0047 (2 HSPs)
scaffold0047 (47-88)||(32419-32460)
scaffold0047 (42-111)||(63316-63384)
[»] scaffold0019 (1 HSPs)
scaffold0019 (42-107)||(122582-122647)
[»] scaffold0028 (1 HSPs)
scaffold0028 (42-90)||(32262-32310)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 2802976 - 2803063
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||    
T  2802976 catagggggccaaaatcgaattattttagttagggggccaaaattgcaacttctgtaaacataggggatcaaaactgctattaagcct 2803063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 755987 - 755900
Alignment:
Q  19 tagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||| |||||||    
T  755987 tagggggccaaaatcgaattattttagttagggggccaaaatcgcaacttcttgaaacatagagggccaaaactgctattaagccttt 755900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 756085 - 756172
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||| |||||    
T  756085 catagggggccaaaatcgaattattttagttagagggccaaaatcgcaacttcttaaaacatagggagccaaaactgctattaagcct 756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6041425 - 6041527
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttattaa 116  Q
    ||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||| | ||||| | |||||  |||||| |    
T  6041425 catagggggtcaaaatcgaattattttagttaggggatcaaaatcgcaacttctataaacatagggggccaaaaatactattaaacctttattttattca 6041524  T
Q  117 caa 119  Q
    |||    
T  6041525 caa 6041527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6045062 - 6045164
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttattaa 116  Q
    ||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||| | ||||| | |||||  |||||| |    
T  6045062 catagggggtcaaaatcgaattattttagttaggggatcaaaatcgcaacttctataaacatagggggccaaaaatactattaaacctttattttattca 6045161  T
Q  117 caa 119  Q
    |||    
T  6045162 caa 6045164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 14170484 - 14170418
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||||||||    
T  14170484 tttaattagggggccaaaatcgcaacttcttaaaacatagggggtcaaaactgcaattaagcctttt 14170418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 2802734 - 2802653
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||| |||| |||||| ||| ||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||||    
T  2802734 catatggggtcaaaattgaattattttagttatgggtccaaaatcgcaacttcttaatacatagggggtcaaaactgctatt 2802653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 4461760 - 4461679
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||| || |  ||||||| |||| |||||||||||||    
T  4461760 catagggggtcaaaatcgaattattttagttaggggaccaaaatcgcaaatttttgaaacataaggggccaaaactgctatt 4461679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 26889619 - 26889700
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||||||||  ||||||||| |   ||||||||||||    
T  26889619 catagggggccaaaatcaaattattttagttagggggtcaaaatcgcaacttcttaaaacataggagactaaaactgctatt 26889700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 11289275 - 11289364
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    ||||| |||||||||||||| ||||| ||||||||  ||| |||||||||||||  |||||||||||| |||| |||||||| ||||||||    
T  11289275 catagtgggccaaaatcgaattatttaagttaggga-ccagaatcgcaacttcttgaaacatagggggccaaagctgctattaagcctttt 11289364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 35795583 - 35795647
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||| ||||||||  |||||||||||| ||||||||| ||| ||||||    
T  35795583 tttagttagggggccaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctt 35795647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 45522447 - 45522506
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||| || |||||    
T  45522447 gttagggggctaaaatcgcaacttcttaaaacatagggggtcaaaactgcttttaagcct 45522506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 6041174 - 6041089
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||||| ||||||| ||| ||| | ||||||| |||||||  |||||||||||| |||||||| |||| ||||    
T  6041174 catagggggccaaaatcgaattattttaattatgggtc-aaaatcgtaacttcttgaaacatagggggccaaaactgttattaagcc 6041089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 6044806 - 6044721
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||||| ||||||| ||| ||| | ||||||| |||||||  |||||||||||| |||||||| |||| ||||    
T  6044806 catagggggccaaaatcgaattattttaattatgggtc-aaaatcgtaacttcttgaaacatagggggccaaaactgttattaagcc 6044721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 44807327 - 44807397
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattta 112  Q
    ||||||||||||||||||||||||||| |  ||| |||||||||||||| ||| ||| ||||||| |||||    
T  44807327 ttagttagggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcctttaattta 44807397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 17512159 - 17512106
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    ||||||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  17512159 tttagttagggggccaaaatcgcaacttcttgaaatatagggggccaaaactgc 17512106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 45163712 - 45163761
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  45163712 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaa 45163761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 23936340 - 23936292
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||    
T  23936340 ttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaa 23936292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 1003520 - 1003461
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattga 100  Q
    |||||||| |||||||||||||||||||||  ||| ||||| || |||||||||||||||    
T  1003520 tttagttatggggccaaaatcgcaacttcttaaaatataggaggccaaaactgctattga 1003461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 14507930 - 14508017
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||| ||| ||||||||||| ||||||||||||| ||| |||||||||||  || |||  |||||||| |||||||| |||| |||||    
T  14507930 cataagggaccaaaatcgaattattttagttaggaggctaaaatcgcaacaactgtaattatagggggccaaaactgatattaagcct 14508017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 8409821 - 8409882
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||| |||||||||||||||||  |||||||  ||||||||||||||||| ||||||||    
T  8409821 gttaggggcccaaaatcgcaacttcttaaaacata-tgggtcaaaactgctattaagcctttt 8409882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 11289038 - 11288996
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaa 59  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  11289038 catagggggccaaaatcaaattattttagttagggggccaaaa 11288996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 23475686 - 23475620
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||| |||| ||||||| ||||||||  |||||||||||| ||||||||| ||| ||||||||    
T  23475686 tttagttaaggggtcaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctttt 23475620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 29340826 - 29340773
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||| |||||||||||||||| || | ||||||||||||| |||||||||||||    
T  29340826 gttaaggggccaaaatcgcaaattatttaaacatagggggccaaaactgctatt 29340773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 12280358 - 12280422
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatt 110  Q
    |||||||||||||||||||||||||  ||||||||  |||||||| ||| ||| || ||||||||    
T  12280358 ttagggggccaaaatcgcaacttcttaaaacatagaaggtcaaaagtgcaattaagtcttttatt 12280422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 1003797 - 1003859
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| |||||||| |||||||||  |||||||||||| |||||||| |||| |||||    
T  1003797 tttagttagggagccaaaattgcaacttcttgaaacataggggg-caaaactgttattaagcct 1003859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 27225829 - 27225790
Alignment:
Q  55 caaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  27225829 caaaatcgcaacttcttaaaacatagggggtcaaaactgc 27225790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 32498660 - 32498723
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||| || || || ||| |||||||| ||||| ||| ||||||||||    
T  32498660 ttagttagggggccaaaatcgtaaattttagaaagatagggggccaaaagtgcaattgagcctt 32498723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 31947915 - 31947853
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| |||||    
T  31947915 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 31947853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 17075006 - 17075083
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttattaacaa 119  Q
    |||||| || || |||||||||||||| || ||| |||||||||||||| ||| ||| || |  ||||||||||||||    
T  17075006 ttagtttggaggtcaaaatcgcaacttttaaaaagatagggggtcaaaagtgcaattaagtcaattatttattaacaa 17075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 17573264 - 17573187
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttattaacaa 119  Q
    |||||| || || |||||||||||||| || ||| |||||||||||||| ||| ||| || |  ||||||||||||||    
T  17573264 ttagtttggaggtcaaaatcgcaacttttaaaaagatagggggtcaaaagtgcaattaagtcaattatttattaacaa 17573187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 26889341 - 26889292
Alignment:
Q  55 caaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||| |||||||||  |||||||||||| ||||||||||||| |||||    
T  26889341 caaaattgcaacttctggaaacatagggggccaaaactgctattaagcct 26889292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 45308515 - 45308454
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||  ||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  45308515 ttagttaggggttcaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcc 45308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 5916909 - 5916957
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  5916909 ttagttagggggcaaaaatcgcaacttcttaaaacatagagggccaaaa 5916957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 12278896 - 12278848
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||  |||||||||||||||||  |||||||||||| |||||    
T  12278896 ttagttagggatccaaaatcgcaacttcttaaaacatagggggccaaaa 12278848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 12075244 - 12075332
Alignment:
Q  19 tagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttta 108  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  12075244 tagggggccaaa-tcgaattattttagttagggggccaaaatcgcaacttctgtaaacatagggggccaaaactgctattaagcctttta 12075332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 12075042 - 12074952
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||| | ||||||||||||| || |||||    
T  12075042 catagggggccaaaatcgaattattttagttagggggtcaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagtctttt 12074952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 3815044 - 3815111
Alignment:
Q  37 ctattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| |||||    
T  3815044 ctattttagttagggggccaaaatcgcaacttcttgaaacataggggttcaaaactgctattaagcct 3815111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 37008275 - 37008208
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattta 112  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||| |||||||||    
T  37008275 gttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagctttttattta 37008208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 23953083 - 23953159
Alignment:
Q  22 ggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||| || ||||||||||  |||| ||||||||||||||||  |||||||||||| |||||||||||||    
T  23953083 ggggccaaaatcaaattattttagtttaggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctatt 23953159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 2350064 - 2350150
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||| | |||||||||| |||||||||||||||| ||||||||||||||||  |||||||| ||  |||||||| |||| ||||    
T  2350064 catagggagtcaaaatcgaattattttagttagggggtcaaaatcgcaacttcttaaaacatagaggaccaaaactgttattaagcc 2350150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 23952785 - 23952718
Alignment:
Q  15 agcatagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacataggg 82  Q
    |||||| ||| ||||||||||| |||||||||||| ||| |||||| |||||||||||||| ||||||    
T  23952785 agcataagggaccaaaatcgaattattttagttagagggtcaaaattgcaacttctataaatataggg 23952718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 40876997 - 40877050
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    ||||||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  40876997 tttagttagggggccaaaatcgcaacttcttggaacatagggggccaaaactgc 40877050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 46895792 - 46895856
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    |||||||| |||| ||||||||||||||||  |||||||||||| ||||||||| ||| ||||||    
T  46895792 tttagttatggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgcaattaagcctt 46895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 50504803 - 50504851
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  50504803 ttagttaggggtccaaaatcgcaacttcttaaaacatagggggtcaaaa 50504851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 367175 - 367234
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||||| |||  ||| ||||||| |||||||||||||| |||||    
T  367175 gttagggggccaaaatcgcaacctcttgaaatataggggatcaaaactgctattaagcct 367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 7196963 - 7197026
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| | ||||||||||||||||  ||||||| |||||| ||||||||||| |||||    
T  7196963 tttagttagggagtcaaaatcgcaacttcttaaaacataaggggtcgaaactgctattaagcct 7197026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 17056757 - 17056678
Alignment:
Q  231 ttcaatcccttatcattgcgctcttgcattctcatttcgtaggagaacaacaatgtttggctgggggaaaatattgacca 310  Q
    ||||||||||||| |||| |||||| |||| |||| | |||||||||||| || |||||| ||  |||||||||||||||    
T  17056757 ttcaatcccttattattgtgctctttcattttcatattgtaggagaacaataacgtttggttgaaggaaaatattgacca 17056678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 3814821 - 3814759
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| ||||||||  ||||||||||||  ||| |||||||| |||||    
T  3814821 ttagttagggggccaaaatcacaacttcttgaaacatagggggctaaatctgctattaagcct 3814759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 7196738 - 7196676
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||  |||||||||||||||||||  ||| |||| ||||||||||||||||| ||||    
T  7196738 tttagttagcaggccaaaatcgcaacttcttgaaatatagagggtcaaaactgctattaagcc 7196676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 1712431 - 1712366
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||| |||||||||||||||||| |  ||| |||||||||||||| ||| ||| ||||||||    
T  1712431 ttagttagagggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcctttt 1712366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 15911955 - 15912016
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||||||||| |  ||| |||||||||||||| ||| ||| ||||    
T  15911955 ttagttagggggccaaaatcgcaacttttgaaaaaatagggggtcaaaagtgcaattaagcc 15912016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 50503762 - 50503721
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  50503762 ttagttagggggccaaaatcgcaacttcttaaaacatagggg 50503721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 6129618 - 6129682
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacata-gggggtcaaaactgctattgagcct 104  Q
    |||||||||||||| ||||||||||| |||  ||||||| ||||||||||||||| ||| |||||    
T  6129618 tttagttagggggcaaaaatcgcaacatcttaaaacataggggggtcaaaactgcaattaagcct 6129682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 7058376 - 7058424
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| |||||||||||||||||  |||||||||||| |||||    
T  7058376 ttagttaggggtccaaaatcgcaacttcttgaaacatagggggccaaaa 7058424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 366951 - 366884
Alignment:
Q  38 tattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    |||||| |||||||||  ||||||  |||||||  |||||||||||| ||||||||||||| ||||||    
T  366951 tattttggttagggggttaaaatcataacttcttaaaacatagggggccaaaactgctattaagcctt 366884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 15788472 - 15788409
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||| ||||||||||||  |||||||| | ||| ||||||| ||| |||||    
T  15788472 tttagttagggggccaatatcgcaacttcttgaaacatagagtgtcgaaactgcaattaagcct 15788409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 21258980 - 21258918
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||| | |||||||||||||||||  ||||||||| |||||||| ||| ||| |||||    
T  21258980 ttagttaggagtccaaaatcgcaacttcttaaaacataggtggtcaaaagtgcaattaagcct 21258918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 26811514 - 26811452
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||| ||||||||||||||||| |  ||| |||||||||||||| ||| ||| |||||    
T  26811514 ttagttaggaggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 26811452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 40876762 - 40876700
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||| ||| |||||| ||||||||  ||| |||||||||||||||||| ||| ||||    
T  40876762 tttagttaggtggctaaaatcacaacttcttgaaatatagggggtcaaaactgcaattaagcc 40876700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 46895499 - 46895437
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||| ||  ||||||||||||||||  ||| |||||||| ||||||||||||| ||||    
T  46895499 tttagttagaggatcaaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcc 46895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 51549393 - 51549455
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| |||||||||||||||||  |||| ||||||| ||||| ||| ||| |||||    
T  51549393 ttagttaggggtccaaaatcgcaacttcttgaaacttagggggccaaaattgcaattaagcct 51549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 4476198 - 4476259
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||||||||  ||| |||| ||| ||||| ||| ||| ||||||||    
T  4476198 ttagggggccaaaatcgcaacttcttaaaatatagagggccaaaagtgcaattaagcctttt 4476259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 39277027 - 39276962
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    ||||||||| | ||||||||||||||| | ||||||||| ||||||||| ||| ||| | ||||||    
T  39277027 ttagttaggagaccaaaatcgcaacttttttaaacatagagggtcaaaagtgcaattaatcctttt 39276962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 45719701 - 45719753
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    |||||||||||| | |||||||||||||||  ||||||||| ||||||||||||    
T  45719701 tttagttagggg-ctaaaatcgcaacttcttaaaacataggaggtcaaaactgc 45719753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 52254551 - 52254482
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    |||||||| ||||||||||||||| || || ||| ||||||| |||||| ||| ||| |||| |||||||    
T  52254551 ttagttagagggccaaaatcgcaatttttagaaagataggggatcaaaagtgcaattaagccatttattt 52254482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 6606952 - 6607000
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||||||||| |  ||| ||| ||||||||||    
T  6606952 ttagttagggggccaaaatcgcaacttttgaaaaaataaggggtcaaaa 6607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 22182668 - 22182708
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggg 82  Q
    ||||||||||||||||||||||||||| || ||| ||||||    
T  22182668 ttagttagggggccaaaatcgcaacttttaaaaagataggg 22182708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 41611302 - 41611254
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| |||||    
T  41611302 ttagttagggggccaaaatcgcaacttttggaaaaatagggggccaaaa 41611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 282829 - 282916
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||| |||||    
T  282829 catagggggccaaaatcgaattattttagttagggggccaaaatcgcaacttcttgaaacataggaggccaaaactgctattaagcct 282916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 327406 - 327493
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||| || |||||||||| |||||    
T  327406 catagggggccaaaatcgaatcattttagttagggggccaaaatcgcaacttcttgaaacatagggggccacaactgctattaagcct 327493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 7873571 - 7873508
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||| |||||    
T  7873571 tttagttagggggccaaaatcgcaactccttgaaacatagggggtcaaaactgcaattaagcct 7873508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 29933524 - 29933588
Alignment:
Q  40 ttttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| |||||||||||||||||||  |||||||| |||||||||||| |||| |||||    
T  29933524 ttttagttaggaggccaaaatcgcaacttcttaaaacatagagggtcaaaactgttattaagcct 29933588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 29933252 - 29933181
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattta 112  Q
    |||| |||| ||||||||||||||||||||  ||||||||| |||||||||||||||| |||| || |||||    
T  29933252 tttaattagagggccaaaatcgcaacttcttgaaacataggaggtcaaaactgctattaagccattaattta 29933181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10691360 - 10691298
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  10691360 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaattgcaattaagcc 10691298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 43078055 - 43078129
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttatta 115  Q
    |||| |||||||||||||||||||||||||  ||||| |||||| |||| |||||||| |||||| | |||||||    
T  43078055 tttaattagggggccaaaatcgcaacttcttgaaacagagggggccaaatctgctattaagccttctttttatta 43078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 43092032 - 43092106
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttatta 115  Q
    |||||||||||||||||||| | |||||||  |||||||||||| |||| |||||||| |||||| | |||||||    
T  43092032 tttagttagggggccaaaattgtaacttcttgaaacatagggggccaaatctgctattaagccttctttttatta 43092106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 9477446 - 9477499
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||||||||||||||| |  ||||||||| ||||||||||||||||    
T  9477446 gttagggggccaaaatcgcaactttttaaaacataggaggtcaaaactgctatt 9477499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 10691641 - 10691694
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    |||||||||||||||||||||| |||||||  ||||||||||||| ||||||||    
T  10691641 tttagttagggggccaaaatcgtaacttcttgaaacatagggggtaaaaactgc 10691694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 282561 - 282518
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaat 60  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  282561 catatggggccaaaatcgaattattttagttagggggccaaaat 282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 33159545 - 33159482
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||||||||| || ||| ||||||||| |||| ||| ||| ||||||    
T  33159545 ttagttagggggccaaaatcgcaacttttaaaaagatagggggttaaaagtgcaattaagcctt 33159482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 21954327 - 21954393
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttta 108  Q
    ||||||| ||||||||||||||||||| |  ||| |||||||||||||| ||| ||| |||||||||    
T  21954327 ttagttaaggggccaaaatcgcaacttttggaaagatagggggtcaaaagtgcaattaagcctttta 21954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 24679100 - 24679158
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||| ||||  |||||||||||| |||||||| |||| ||||    
T  24679100 gttagggggccaaaatcgcaatttcttgaaacatagggggccaaaactgttattaagcc 24679158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 7873883 - 7873948
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||| ||||||||| ||| ||||  |||||||||||| ||||||||| ||| |||||||    
T  7873883 tttagttagggagccaaaatcacaatttcttgaaacatagggggccaaaactgcaattaagccttt 7873948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 18201415 - 18201351
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||||||||||||||||| || ||| |||| ||| ||||| ||| ||| |||||||    
T  18201415 ttagttagggggccaaaatcgcaacttttagaaagatagtgggccaaaagtgcaattaagccttt 18201351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 40139590 - 40139526
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||||||||||||||||| || ||| |||||||  ||||| ||| ||| |||||||    
T  40139590 ttagttagggggccaaaatcgcaacttttagaaagataggggcccaaaagtgcaattaagccttt 40139526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 9500159 - 9500226
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttat 113  Q
    ||||||| |||||||||||||||||  |||| |||||||  |||||||||||| | | ||||||||||    
T  9500159 ttaggggaccaaaatcgcaacttcttgaaacttagggggctaaaactgctattaatctttttatttat 9500226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 30283464 - 30283405
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||| |||||||||||||||||||||  ||||||| ||||| |||||||| ||| |||||    
T  30283464 gttatggggccaaaatcgcaacttcttgaaacataaggggtaaaaactgcaattaagcct 30283405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 46199115 - 46199052
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||| ||||||| |||||||||||||||||  ||| |||| ||| ||||||||||||| |||||    
T  46199115 tttatttaggggaccaaaatcgcaacttcttaaaatatagaggggcaaaactgctattaagcct 46199052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 21939331 - 21939389
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||   | || ||||||| ||||||||||||| |||||    
T  21939331 ttagggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaagcct 21939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 9477191 - 9477138
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||| ||||| ||||||||||||| |  |||||||||||| |||||||||||||    
T  9477191 gttaaggggctaaaatcgcaactttttaaaacatagggggccaaaactgctatt 9477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 20505266 - 20505323
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||||||   |||  |||||||| |||||||||||| ||||    
T  20505266 ttagggggccaaaatcgcaacttcataaaagctagggggtgaaaactgctattaagcc 20505323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 42436890 - 42436829
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||| ||||||||| |||||||  |||||||||||| ||||| ||| ||| ||||    
T  42436890 ttagttaggggtccaaaatcgtaacttcttaaaacatagggggccaaaaatgcaattaagcc 42436829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 42438029 - 42438094
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||||||||||||  ||| |||| ||| ||||| ||| ||| | ||||||    
T  42438029 ttagttagggggccaaaatcgcaacttcttgaaatatagagggccaaaagtgcaattaaacctttt 42438094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 46265922 - 46265870
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||||||| ||||||||  |||| || ||||| ||||||||||||    
T  46265922 ttagggggccaaaatcccaacttcttaaaacttaaggggttaaaactgctatt 46265870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 48056846 - 48056766
Alignment:
Q  231 ttcaatcccttatcattgcgctcttgcattctcatttcgt-aggagaacaacaatgtttggctgggggaaaatattgacca 310  Q
    |||||| ||||||||||| ||| || |||| ||||||  | |||||||||| ||||||||| ||| | |||||||||||||    
T  48056846 ttcaattccttatcattgagctttttcattttcattttttcaggagaacaataatgtttggttggagaaaaatattgacca 48056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 42586318 - 42586404
Alignment:
Q  20 agggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  42586318 agggggccaaaatcaaattattttagttagggggccaaaatcgcaacttctgtaaacatggggggccaaaactgctattaagccttt 42586404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 42586072 - 42585985
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||| |||||    
T  42586072 catagggggccgaaatcgaattattttagttagggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 42585985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 6464327 - 6464390
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||    
T  6464327 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 6464390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 128303 - 128251
Alignment:
Q  54 ccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||| |||||||||  |||||||||||||||||||||||||| |||||||    
T  128303 ccaaaattgcaacttcttgaaacatagggggtcaaaactgctattaagccttt 128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 7611127 - 7611063
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttatt 114  Q
    |||||||||||||||||||||  |||||||||| || |||||||| |||||||||| | ||||||    
T  7611127 ggggccaaaatcgcaacttcttaaaacatagggagttaaaactgcaattgagccttatttttatt 7611063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 20126500 - 20126428
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttat 113  Q
    ||||||||||||| ||||||| ||||||||  |||||||||||| ||||||| ||||| ||||| || |||||    
T  20126500 tttagttagggggtcaaaatcacaacttcttgaaacatagggggccaaaactcctattaagcctattttttat 20126428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 7611419 - 7611470
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaact 92  Q
    |||||||| ||||||||||| ||||||| |  ||||||||||||||||||||    
T  7611419 tttagttaaggggccaaaattgcaactttttaaaacatagggggtcaaaact 7611470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 20126670 - 20126713
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacataggggg 84  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||    
T  20126670 tttagttagggggtcaaaatcgcaacttcttaaaacataggggg 20126713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 36361095 - 36361032
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||  ||||||||||||||||  |||||||||||  ||||||||| ||| |||||    
T  36361095 tttagttaggggatcaaaatcgcaacttcttgaaacataggggaccaaaactgcaattaagcct 36361032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 36361413 - 36361463
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaac 91  Q
    |||||||| |||||||||||||||||||||  ||| |||||||| ||||||    
T  36361413 tttagttaaggggccaaaatcgcaacttcttaaaatatagggggccaaaac 36361463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 37887733 - 37887671
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||| |||||||||||||||||| |  ||| |||||||||||||| ||| ||| |||||    
T  37887733 ttagttagagggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 37887671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 38162654 - 38162592
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||| |||||||| ||||||||  |||||||||||| ||||| ||| ||| |||||    
T  38162654 ttagttaggggtccaaaatcacaacttcttgaaacatagggggccaaaagtgcaattaagcct 38162592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 10169076 - 10169007
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    ||||||||||| ||||||||||||||| || ||| |||||||| ||||| ||| ||| | ||||| ||||    
T  10169076 ttagttaggggaccaaaatcgcaacttttaaaaagatagggggccaaaagtgcaattaaacctttaattt 10169007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 12610297 - 12610236
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    |||| |||||||||||||| || ||| |||||||| ||||| ||| ||| ||||||||||||    
T  12610297 ggggacaaaatcgcaacttttaaaaagatagggggccaaaagtgcaattaagccttttattt 12610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 22471953 - 22472013
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||| ||||||||||||||||   |||||||| |||||||| ||| ||| |||||||    
T  22471953 ttagggggtcaaaatcgcaacttcttgtaacataggaggtcaaaagtgcaattaagccttt 22472013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 37897974 - 37898038
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatt 110  Q
    |||||||||||||||||||||||  | |||  |||||||  |||||||||||| || ||||||||    
T  37897974 ttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaaggcttttatt 37898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 38163668 - 38163696
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttct 70  Q
    |||||||||||||||||||||||||||||    
T  38163668 ttagttagggggccaaaatcgcaacttct 38163696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 38973388 - 38973325
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||||||||||||||| ||| ||||  |||||||||||| ||||| ||| ||| |||||||    
T  38973388 ttagttagggggccaaaatc-caatttcttaaaacatagggggccaaaagtgcaattaagccttt 38973325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 41138622 - 41138558
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||| ||||||||||||| || ||| ||||||||  |||| ||| ||| |||||||    
T  41138622 ttagttagggggctaaaatcgcaacttttagaaagatagggggctaaaagtgcaattaagccttt 41138558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 41148251 - 41148164
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  |||||||||||| ||||||||||||| |||||    
T  41148251 catagggggccaaaatcgaattattttagttagggggctaaaatcggaacttcttgaaacatagggggccaaaactgctattaagcct 41148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 53578883 - 53578970
Alignment:
Q  17 catagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||| |||||||| || ||||||||||| ||||| |||||||||||||||  |||||||||||| |||||| |||||| |||||    
T  53578883 cataggggaccaaaatcaaattattttagttaaggggctaaaatcgcaacttcttaaaacatagggggccaaaacggctattaagcct 53578970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 41148533 - 41148615
Alignment:
Q  22 ggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||| || ||||||||||||||| |||||||| ||||||||  ||| |||||||| ||||||||||||| |||||    
T  41148533 ggggccaaaatcaaattattttagttaggggaccaaaatcacaacttcttaaaatatagggggccaaaactgctattaagcct 41148615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 53831214 - 53831152
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||| ||||    
T  53831214 tttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaactgctattaagcc 53831152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 47742596 - 47742653
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  47742596 tttagttagggggctaaaatcgtaacttcttaaaacatagggggtcaaaactgctatt 47742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 30064063 - 30064002
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||| |||||||||||||||||  |||||||||||| ||||||| ||||| ||||    
T  30064063 ttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaacttctattaagcc 30064002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 47742293 - 47742236
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||||||||||||||||||||   ||||||||| || |||||||||||||    
T  47742293 tttagttagggggccaaaatcgcaacttcctgaaacataggtggacaaaactgctatt 47742236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 14816860 - 14816902
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggggg 84  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  14816860 ttagttaggggtccaaaatcgcaacttctagaaacataggggg 14816902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19938578 - 19938644
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||||||||| | || ||| ||||| |||||||| ||| ||| ||||||||    
T  19938578 tttagttagggggccaaaatcgcaacatttaaaaatataggaggtcaaaagtgcaattaagcctttt 19938644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 31760827 - 31760765
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||| ||||||||  ||||||||| |||||||| ||| ||| |||||    
T  31760827 ttagttagggggccaaaatcacaacttcttaaaacataggaggtcaaaagtgcaattaagcct 31760765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 5548005 - 5548062
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||| ||||| |||||||||||||||||||  ||||||||| || |||||||||||||    
T  5548005 tttaattaggaggccaaaatcgcaacttcttaaaacataggaggccaaaactgctatt 5548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 30064352 - 30064421
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatt 110  Q
    ||||||||||| ||||||||||||||||||  |||| ||||| | ||||||| ||||| ||||| |||||    
T  30064352 tttagttagggagccaaaatcgcaacttcttaaaacttagggagccaaaactactattaagcctattatt 30064421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 1139217 - 1139169
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||| |||||||||||||||  || |||||||||||||||    
T  1139217 ttagttagggggcaaaaatcgcaacttcttgaaccatagggggtcaaaa 1139169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 1186719 - 1186655
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||| ||| ||| |||||||    
T  1186719 ttagttagggggccaaaatcgcaacttttaaaaagttagggggccaaaagtgcaattaagccttt 1186655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 37831649 - 37831597
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||||||||||||||||||||  |||| |||||||  ||||||||||||    
T  37831649 ttagggggccaaaatcgcaacttcttaaaacttagggggctaaaactgctatt 37831597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 26858405 - 26858342
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||| ||||||||||||||| || ||| |||||||| ||||| ||| ||| ||||||    
T  26858405 ttagttaggggaccaaaatcgcaacttttaaaaagatagggggccaaaagtgcaattaagcctt 26858342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 55732940 - 55733003
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||||||||| || ||| |||||| | ||||| ||| ||| ||||||    
T  55732940 ttagttagggggccaaaatcgcaacttttaaaaagatagggagccaaaagtgcaattaagcctt 55733003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 1140618 - 1140660
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggggg 84  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  1140618 ttagttaggggtccaaaatcgcaacttcttgaaacataggggg 1140660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 6033904 - 6033966
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattta 112  Q
    |||||||||||||||||||||  ||| |||||||| ||||| ||| ||| ||||||| |||||    
T  6033904 ggggccaaaatcgcaacttcttaaaatatagggggccaaaaatgcgattaagcctttaattta 6033966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 40489272 - 40489230
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggggg 84  Q
    ||||||||||||||||||||||||||| || ||| ||||||||    
T  40489272 ttagttagggggccaaaatcgcaacttttagaaagataggggg 40489230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 3369905 - 3369844
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||||||||||||||||  | || |||||||  ||||||| |||| |||||||    
T  3369905 gttagggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaagccttt 3369844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 5547678 - 5547613
Alignment:
Q  38 tattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||| |||||||||| ||||||||  ||| | || ||| ||||||||||||| ||||    
T  5547678 tattttagttaggaggccaaaatctcaacttcttgaaatacagagggccaaaactgctattaagcc 5547613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 14835585 - 14835626
Alignment:
Q  47 tagggggccaaaatcgcaacttctataaacatagggggtcaa 88  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  14835585 tagggggccaaaatcgcaacttttataaagttagggggtcaa 14835626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 19909226 - 19909169
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||  | |||  |||||||| |||||||||||| ||||||||    
T  19909226 ggggccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagcctttt 19909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 35901805 - 35901846
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    |||||||||| |||||||||||||||| || |||||||||||    
T  35901805 ttagttagggagccaaaatcgcaacttttagaaacatagggg 35901846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 53061801 - 53061866
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||| ||||||||||||||||  ||||||| ||| |||||  ||| ||| ||||||||    
T  53061801 ttagttagggggtcaaaatcgcaacttcttaaaacatatgggatcaaaggtgcaattaagcctttt 53061866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 6033865 - 6033913
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||| ||||||||||||||||||||  ||||||| |||| |||||    
T  6033865 ttagttagagggccaaaatcgcaacttcttgaaacatatggggccaaaa 6033913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 7472437 - 7472485
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||| |||||||||||||| || ||| |||||||| |||||    
T  7472437 ttagttagggggtcaaaatcgcaacttttagaaagatagggggccaaaa 7472485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 8143094 - 8143046
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| |||||||||||||||||  ||||||||| || |||||    
T  8143094 ttagttaggggtccaaaatcgcaacttcttaaaacataggaggccaaaa 8143046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 19938363 - 19938315
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||| ||||| || ||| |||| |||||||||    
T  19938363 ttagttagggggccaaaatcgtaacttttaaaaagatagagggtcaaaa 19938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 31761855 - 31761903
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||| |||||||  ||| |||||||| |||||    
T  31761855 ttagttagggggccaaaatcgtaacttcttgaaatatagggggccaaaa 31761903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 8030210 - 8030124
Alignment:
Q  19 tagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    |||||||||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||    
T  8030210 tagggggccataatcgaattattttagttaggggaccaaaattgcaacttctgtaaacatagggggccaaaactgctattaagcctt 8030124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 4856792 - 4856709
Alignment:
Q  19 tagggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||  ||||||| |||| ||||||||||||| ||||    
T  4856792 tagggggccaaaatcgaattattttagttaggggtc-aaaatcgcaacttcttgaaacataaggggccaaaactgctattaagcc 4856709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 14816049 - 14816112
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||    
T  14816049 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 14816112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 17850486 - 17850554
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttat 109  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||| ||| ||||||    
T  17850486 tttagttaggaggccaaaatcgcaacttcttaaaacatagggggccaaaactactattaagctttttat 17850554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 12802456 - 12802524
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttat 109  Q
    |||||||||  | |||||||||||||||||  |||||||||| | ||||||||||||| ||||||||||    
T  12802456 tttagttagaagaccaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagccttttat 12802524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 28719378 - 28719330
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||    
T  28719378 ttagttagggggccaaaatcgcaacttcttaaaacatagggggccaaaa 28719330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 36286406 - 36286473
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttat 109  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||||||||    
T  36286406 ttagttagggggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagccttttat 36286473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 52292 - 52354
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||||||| ||||  |||||||||||| ||||| ||| ||| |||||    
T  52292 ttagttagggggccaaaatcgcaaattcttaaaacatagggggccaaaagtgcaattaagcct 52354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 14815760 - 14815698
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||| ||| |||||| ||||||||||  |||||||||||| ||||||||||||| ||||    
T  14815760 tttagttaagggaccaaaaccgcaacttcttgaaacatagggggccaaaactgctattaagcc 14815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 23280883 - 23280945
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||| || ||| |||||||| ||||| ||| ||| |||||    
T  23280883 ttagttagggggccaaaatcgcaacttttagaaagatagggggacaaaagtgcaattaagcct 23280945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 11188367 - 11188298
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    ||||||||||||||||||||||||||| |  ||| |||||||||||||| ||| ||| || || ||||||    
T  11188367 ttagttagggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaaggctattattt 11188298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 11363943 - 11363882
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||| ||||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  11363943 ttagttagggagccaaaatcgcaacttcttgaaacatagggggccaaaaatgcaattaagcc 11363882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 21631879 - 21631831
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||||    
T  21631879 ttagttagggggccaaaatcgcaacttcatgaaacatagggggccaaaa 21631831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 2755202 - 2755265
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||||    
T  2755202 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctt 2755265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 8740216 - 8740153
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||| ||| ||||||||||||||||  ||| ||||||||| |||||||| ||| |||||    
T  8740216 tttagttagagggtcaaaatcgcaacttcttaaaatatagggggttaaaactgcaattaagcct 8740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 14983953 - 14984016
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||| |||||||||||||||||  ||||||| |||| ||||| ||| ||| ||||||    
T  14983953 ttagttaggggaccaaaatcgcaacttcttaaaacatacggggccaaaagtgcaattaagcctt 14984016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 20662571 - 20662520
Alignment:
Q  47 tagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||| ||||||||||||||||| ||||| |||||||| |||||| |||||    
T  20662571 taggggaccaaaatcgcaacttctttaaacttagggggttaaaactactatt 20662520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 35500347 - 35500406
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||  ||||||||||   ||||||| ||||| |||||    
T  35500347 gttagggggccaaaatcgcaacttcttgaaacatagggccccaaaactactattaagcct 35500406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 3368733 - 3368671
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||| || |||||||||||||||| |||||| |||||||| ||||| ||| ||| |||||    
T  3368733 ttagttaaggagccaaaatcgcaacttttataaagatagggggccaaaagtgcaattaagcct 3368671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 23048351 - 23048289
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||||||||||||  ||| ||| |||| ||||| ||| ||| |||||    
T  23048351 ttagttagggggccaaaatcgcaacttcttaaaatataaggggccaaaaatgcaatttagcct 23048289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 10857400 - 10857339
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||    
T  10857400 ttagttagggggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagcc 10857339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 16143728 - 16143687
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    |||||||||||||||||||||||||||||  ||| |||||||    
T  16143728 ttagttagggggccaaaatcgcaacttcttgaaatatagggg 16143687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 20480138 - 20480077
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||| ||||||| || ||| |||||||| ||||| ||| ||| ||||    
T  20480138 ttagttagggggccaaaattgcaacttttaaaaatatagggggccaaaagtgcaattaagcc 20480077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 22333336 - 22333401
Alignment:
Q  51 gggccaaaatcgcaacttctataaa-catagggggtcaaaactgctattgagccttttatttatta 115  Q
    ||||||||||||||||||  | ||| ||||||||| ||||||||||||| ||||| ||| ||||||    
T  22333336 gggccaaaatcgcaactttgaaaaaacatagggggccaaaactgctattcagcctattacttatta 22333401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 32661687 - 32661748
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||    
T  32661687 ttagttagggggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagcc 32661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 16144923 - 16144963
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggg 82  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  16144923 ttagttagagggccaaaatcgcaacttcttaaaacataggg 16144963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 28217125 - 28217165
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggg 82  Q
    ||||||||||||||||||||||||||| || ||| ||||||    
T  28217125 ttagttagggggccaaaatcgcaacttttagaaagataggg 28217165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 36286184 - 36286120
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    ||||||||||||||||||||||||||| |  ||| |||| ||| ||||| ||| ||| |||||||    
T  36286184 ttagttagggggccaaaatcgcaacttttgaaaatatagagggccaaaagtgcaattaagccttt 36286120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 39374382 - 39374446
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||||||| |||||| ||||||| |  ||| |||||||||||||| ||| ||| |||||||    
T  39374382 ttagttagggggtcaaaattgcaacttttgaaaatatagggggtcaaaagtgcaattaagccttt 39374446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 44078542 - 44078590
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||  |||||||||||||||||  |||||||||||| |||||    
T  44078542 ttagttagggaaccaaaatcgcaacttcttaaaacatagggggccaaaa 44078590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 27911 - 27983
Alignment:
Q  21 gggggccaaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactg 93  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  27911 gggggccataatcgaattattttagttaggggtccaaaatcgcaacttctgtaaacatatggggtcaaaactg 27983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 53255276 - 53255339
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||| |||||    
T  53255276 tttagttagggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaagcct 53255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 53255025 - 53254963
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    ||||||||| ||||||||||||||||||||  |||||||||||| |||||||| |||| ||||    
T  53255025 tttagttagagggccaaaatcgcaacttcttgaaacatagggggccaaaactgttattaagcc 53254963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 51453603 - 51453547
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||    
T  51453603 tttagttagggggtcaaaatcgcaacttcttaaaacata-ggggtcaaaactgctatt 51453547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 32831480 - 32831546
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||| ||||||| ||||||| | ||||||||||||| |||||||  |||| ||||||||    
T  32831480 tttagttaggggaccaaaattgcaacttttttaaacatagggggccaaaactattattaagcctttt 32831546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 6128492 - 6128560
Alignment:
Q  29 aaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    |||||||| ||||||||||||||| | |||||||||||||||  ||| |||| ||| |||||||||||||    
T  6128492 aaatcgaattattttagttaggggtc-aaaatcgcaacttcttaaaatatagtgggccaaaactgctatt 6128560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 37755189 - 37755242
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgc 94  Q
    |||||||||||||| ||||||||||||||   |||||||||||| |||||||||    
T  37755189 tttagttagggggctaaaatcgcaacttcatgaaacatagggggccaaaactgc 37755242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 43001877 - 43001942
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||||||||||| || || ||| |||||||| ||||| ||| ||| ||||||||    
T  43001877 ttagttagggggccaaaatcgcaatttttaaaaagatagggggccaaaagtgcaattaagcctttt 43001942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 47284544 - 47284592
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| ||||||||||||||| || ||| ||||||||||||||    
T  47284544 ttagttaggggaccaaaatcgcaacttttaaaaagatagggggtcaaaa 47284592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 51224987 - 51224939
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||||    
T  51224987 ttagttagggggccaaaatcgcaacttcttgaaacataggaggccaaaa 51224939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 17258186 - 17258245
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||| |||||||||||||||||  |||||||||||| ||||| ||| ||| |||||    
T  17258186 gttaggggtccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcct 17258245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 40988659 - 40988596
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||| |||||||||||||||||  |||||||||| | ||||| ||| ||| ||||||    
T  40988659 ttagttaggggaccaaaatcgcaacttcttgaaacatagggagccaaaagtgcaattaagcctt 40988596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 2181373 - 2181315
Alignment:
Q  45 gttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||| |||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  2181373 gttaggggtccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcc 2181315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 3193038 - 3193096
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||| ||||||||||||||||  |||  |||||||| |||||||||||| |||||    
T  3193038 ttagggggtcaaaatcgcaacttcttgaaagttagggggtgaaaactgctattaagcct 3193096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 50380212 - 50380154
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||||||||||||||||  |||||||| ||| ||||| ||| ||| |||||    
T  50380212 ttagggggccaaaatcgcaacttcttaaaacatagagggccaaaagtgcaattaagcct 50380154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 50381559 - 50381621
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    ||||||| ||| |||||||||||||||||  |||||||||| | ||||| ||| |||||||||    
T  50381559 ttagttaagggtccaaaatcgcaacttcttgaaacatagggagccaaaagtgcaattgagcct 50381621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 54476104 - 54476042
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcct 104  Q
    |||||||||||| ||||||||||||||||  ||| |||||||| ||||| ||| ||| |||||    
T  54476104 ttagttagggggtcaaaatcgcaacttcttaaaatatagggggccaaaagtgcaattaagcct 54476042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 51226503 - 51226544
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    ||||||||||| |||||||||||||||||  |||||||||||    
T  51226503 ttagttaggggtccaaaatcgcaacttcttaaaacatagggg 51226544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 54716759 - 54716832
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttatttatta 115  Q
    ||||||||||| ||||||||||||||| || ||| ||||| |  ||||| ||| ||| |||||||| |||||||    
T  54716759 ttagttaggggaccaaaatcgcaacttttaaaaagataggtgaccaaaagtgcaattaagccttttttttatta 54716832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 1807437 - 1807489
Alignment:
Q  54 ccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttt 106  Q
    |||||||||||| ||||  ||| |||||||| ||||||||||||| |||||||    
T  1807437 ccaaaatcgcaaattcttaaaatatagggggccaaaactgctattaagccttt 1807489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 5636660 - 5636708
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||| || |||||||||||||||||  ||||||||| ||||||||    
T  5636660 ttagttagaggtccaaaatcgcaacttcttgaaacataggaggtcaaaa 5636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 17256629 - 17256581
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| |||||    
T  17256629 ttagttagggggccaaaattgcaacttcttgaaatatagggggccaaaa 17256581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 32772033 - 32772081
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| |||||||| ||||||||  |||||||||||| |||||    
T  32772033 ttagttaggggaccaaaatcacaacttcttgaaacatagggggccaaaa 32772081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 55228059 - 55228107
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||| |||||||||||||||||  ||| |||||||| |||||    
T  55228059 ttagttaggggtccaaaatcgcaacttcttaaaatatagggggccaaaa 55228107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 2078242 - 2078186
Alignment:
Q  27 caaaatcgaactattttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    |||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||    
T  2078242 caaaatcgaattattttagttagggggtcaaaatcgcaacttcttgaaacatagggg 2078186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 28574559 - 28574620
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  28574559 ttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcc 28574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6499836 - 6499786
Alignment:
Q  18 atagggggccaaaatcgaactattttagttagggggccaaaatcgcaactt 68  Q
    |||||||  |||||||||| ||||||||||||||| |||||||||||||||    
T  6499836 ataggggatcaaaatcgaattattttagttaggggaccaaaatcgcaactt 6499786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 11623220 - 11623159
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||||||||||||||  |||||||| ||| ||||| ||| ||| ||||    
T  11623220 ttagttagggggccaaaatcgcaacttcttgaaacatagagggccaaaagtgcaattaagcc 11623159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 2078488 - 2078548
Alignment:
Q  38 tattttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    ||||||| ||| | ||||||| ||||||||||||||||||||||||  ||||||| |||||    
T  2078488 tattttaattatgaggccaaagtcgcaacttctataaacataggggaccaaaactactatt 2078548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 12203953 - 12203905
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||| ||||||||||||||||  |||||||||||| |||||    
T  12203953 ttagttagggggtcaaaatcgcaacttcttgaaacatagggggccaaaa 12203905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 31175597 - 31175549
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  31175597 ttagttagggggccaaaatcgcaactttaaaaaaaatagggggtcaaaa 31175549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 4037099 - 4037036
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||||    
T  4037099 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctt 4037036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 9070136 - 9070187
Alignment:
Q  56 aaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    |||||||||||||||  |||||||||||| ||||| ||||||| ||||||||    
T  9070136 aaaatcgcaacttcttgaaacatagggggccaaaaatgctattaagcctttt 9070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 12766471 - 12766530
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    ||||||||||||||||||||||||   |||  |||||||| |||||||||||| ||||||    
T  12766471 ttagggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcctt 12766530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 10582150 - 10582192
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    ||||||||||||||||||||||||||||||  ||| |||||||    
T  10582150 tttagttagggggccaaaatcgcaacttcttgaaatatagggg 10582192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 2017233 - 2017164
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    ||||||||||| |||||||| ||||||||  |||| ||||||  ||||| ||| ||| ||||||||||||    
T  2017233 ttagttaggggtccaaaatcacaacttcttgaaacttaggggaccaaaaatgcaattaagccttttattt 2017164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 12798774 - 12798725
Alignment:
Q  56 aaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctt 105  Q
    |||||||||||||||  ||| |||||||| ||||||||||||| ||||||    
T  12798774 aaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcctt 12798725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 22516034 - 22515993
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggg 83  Q
    ||||||||||| |||||||||||||||||  |||||||||||    
T  22516034 ttagttaggggtccaaaatcgcaacttcttgaaacatagggg 22515993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 30369837 - 30369784
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||| ||||||||||||||||  ||||||| |||| ||||||||||||| ||||    
T  30369837 ggggacaaaatcgcaacttcttaaaacataaggggccaaaactgctattaagcc 30369784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 929459 - 929506
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||| ||||||||||||| || ||| ||||||||||||||    
T  929459 ttagttagggggc-aaaatcgcaacttttaaaaatatagggggtcaaaa 929506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 2018574 - 2018618
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||  ||||||| |||| |||||    
T  2018574 ttagggggccaaaatcgcaacttcttgaaacataaggggccaaaa 2018618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 7504883 - 7504931
Alignment:
Q  50 ggggccaaaatcgcaacttctataaacatagggggtcaaaactgctatt 98  Q
    ||||||||||| |||||||||  ||| |||||||| |||||||||||||    
T  7504883 ggggccaaaattgcaacttcttgaaatatagggggccaaaactgctatt 7504931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10413 - 10351
Alignment:
Q  41 tttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcc 103  Q
    |||||||||||||||||||| |||| ||||  ||||||||| || ||||||||||||| ||||    
T  10413 tttagttagggggccaaaattgcaatttcttaaaacataggaggccaaaactgctattaagcc 10351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 22851 - 22809
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacataggggg 84  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  22851 ttagttaggggtccaaaatcgcaacttctagaaacataggggg 22809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 4114 - 4073
Alignment:
Q  47 tagggggccaaaatcgcaacttctataaacatagggggtcaa 88  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  4114 tagggggccaaaatcgcaacttttataaagttagggggtcaa 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 550 - 489
Alignment:
Q  46 ttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||| ||| ||| ||||||||    
T  550 ttagggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcctttt 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 3380 - 3428
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||||    
T  3380 ttagttagggggccaaaatcgcaacttcttaaaacataggaggccaaaa 3428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 32419 - 32460
Alignment:
Q  47 tagggggccaaaatcgcaacttctataaacatagggggtcaa 88  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  32419 tagggggccaaaatcgcaacttttataaagttagggggtcaa 32460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 63316 - 63384
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagccttttattt 111  Q
    ||||||||||| ||||||||||||||| |  ||| ||| |||||||||| ||| ||| ||||||||||||    
T  63316 ttagttaggggaccaaaatcgcaacttttgaaaaaata-ggggtcaaaagtgcaattaagccttttattt 63384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 122582 - 122647
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaactgctattgagcctttt 107  Q
    ||||||||| ||||||||||||||||| |  ||| |||||||| ||||| ||| ||| ||||||||    
T  122582 ttagttaggaggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagcctttt 122647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 32262 - 32310
Alignment:
Q  42 ttagttagggggccaaaatcgcaacttctataaacatagggggtcaaaa 90  Q
    ||||||||||||||||||||||||||| |  ||| |||||||| |||||    
T  32262 ttagttagggggccaaaatcgcaacttttggaaagatagggggccaaaa 32310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University