View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_high_2 (Length: 648)

Name: NF14258_high_2
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_high_2
NF14258_high_2
[»] chr1 (1 HSPs)
chr1 (20-644)||(35915613-35916237)


Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 644
Target Start/End: Original strand, 35915613 - 35916237
Alignment:
Q  20 gctgcctcagccatcatcattttcatcaaattaaaattaacactttcaatctgttgttaaagatatacaataattatttgtagctatgaacaaagaagag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915613 gctgcctcagccatcatcattttcatcaaattaaaattaacactttcaatctgttgttaaagatatacaataattatttgtagctatgaacaaagaagag 35915712  T
Q  120 caaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcagaggaggagttgcagcacatgccattggcgccggtggcgtgga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35915713 caaaagtgtgacaaaatgtcattatcttcatcttcttctccgctaccaagcgaatcggaggaggagttgcagcacatgccattggcgccggtggcgtgga 35915812  T
Q  220 acaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915813 acaataggaggaggctatcgaagcagctatcgatgtgcgagaagccgagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgt 35915912  T
Q  320 tcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagaga 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915913 tcaagattgtgtttgtgatgatataactgatgatgatttgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagaga 35916012  T
Q  420 ttgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916013 ttgtgtaatacattgcctgcccttgatctttattttgctgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttg 35916112  T
Q  520 gggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatcann 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35916113 gggctcgttcttcttcctttggaagccctagaagtgatgctgactcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatcatt 35916212  T
Q  620 nnnnngccttaatcctttgcttctc 644  Q
         |||||||||||||| |||||    
T  35916213 tttttgccttaatcctttggttctc 35916237  T

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