View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_21 (Length: 304)
Name: NF14258_high_21
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 38336441 - 38336710
Alignment:
| Q |
18 |
agttcaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38336441 |
agttcaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatcctttaaaaggggagcatttacacgttaggtgttgtgccc |
38336540 |
T |
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| Q |
118 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgcactcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336541 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgcactcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
38336640 |
T |
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| Q |
218 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaagtctacagtgcagtat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336641 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaagtctacagtgcagtat |
38336710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 29638606 - 29638337
Alignment:
| Q |
18 |
agttcaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgccc |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29638606 |
agtttaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatccgttaaaaggggagcatttacatgttaggtgttgtgccc |
29638507 |
T |
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| Q |
118 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgcactcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638506 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgcactcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
29638407 |
T |
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| Q |
218 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaagtctacagtgcagtat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638406 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaagtctacagtgcagtat |
29638337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 20418612 - 20418343
Alignment:
| Q |
18 |
agttcaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
20418612 |
agttcaaatgatcttgctatctcttacctgaaaaataggatggaggattggaattcacatcctttataaggggagcatttacacgttaggtgttgtgccc |
20418513 |
T |
|
| Q |
118 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgcactcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418512 |
acattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgtattcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagc |
20418413 |
T |
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| Q |
218 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaagtctacagtgcagtat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20418412 |
tagtcgtttggataggtttaagatatgtattaaagaagctaggatacaagacaattctacagtgcagtat |
20418343 |
T |
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