View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_24 (Length: 276)
Name: NF14258_high_24
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 48254813 - 48255070
Alignment:
| Q |
18 |
ataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggttggaagtg |
117 |
Q |
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| T |
48254813 |
ataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggttggaagtg |
48254912 |
T |
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| Q |
118 |
aaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaagaaaatagtatgt |
217 |
Q |
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| T |
48254913 |
aaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaagaaattagtatgt |
48255012 |
T |
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| Q |
218 |
taatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaatt |
276 |
Q |
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| T |
48255013 |
taatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaatt |
48255070 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 39282340 - 39282245
Alignment:
| Q |
28 |
cttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggttggaagtgaaatca |
123 |
Q |
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| T |
39282340 |
cttaccttaatggtggcagcaatctgtgaaataactagaagcagatactcgtgcactctacctatgccgatgactgctacgttggaagtgaaatca |
39282245 |
T |
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