View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_26 (Length: 265)
Name: NF14258_high_26
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 30434207 - 30434446
Alignment:
| Q |
9 |
gaagaatatgacctgaattagaatattagaacatatcttttgggggatgcgttcaaaagaactcaaaagaaaagcctgcaaatcatcctataatgagaat |
108 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30434207 |
gaagaaaattacctgaattagaatattagaacatatcttttgggggataccttcaaaagaactcaacagaaaagcctgcaaatcatcctataatgagaat |
30434306 |
T |
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| Q |
109 |
atataacgatttttgaataaaattcgagtaaattaatcacttaaaagccaaacaaaagaagggtgtattttagggggaaatagagatcctaccagtaaaa |
208 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30434307 |
atataacgatttttgaataaaattcgagtcaattaatcacttaaaatccaaacaaaagaagggtgtattttagggggaaatagagatcctaccagtaaaa |
30434406 |
T |
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| Q |
209 |
ttgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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| T |
30434407 |
tagatttttgcgatggtgattgaggcagataagggtaaac |
30434446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 30244094 - 30243853
Alignment:
| Q |
9 |
gaagaatatgacctgaattagaatattagaacatat--cttttgggggatgcgttcaaaagaactcaaaagaaaagcctgcaaatcatcctataatgaga |
106 |
Q |
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| T |
30244094 |
gaagaaaattacctgaattagaatattagaacatatatcttttgggggatgcgttcaaaagaactcaacagaaaagcctgcaaatcatcctataatgaga |
30243995 |
T |
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| Q |
107 |
atatataacgatttttgaataaaattcgagtaaattaatcacttaaaagccaaacaaaagaagggtgtattttagggggaaatagagatcctaccagtaa |
206 |
Q |
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| T |
30243994 |
atatataacgattttttaataaaattcgagtaaattaatcacttaaaatccaaacataagaagggtgtattttagggggaaatagagatcctaccagtaa |
30243895 |
T |
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| Q |
207 |
aattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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| T |
30243894 |
aattgatttttgcgatggtgattgaggcagataagggtaaac |
30243853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 30340084 - 30340018
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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| T |
30340084 |
ggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
30340018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 30748201 - 30748267
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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| T |
30748201 |
ggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagataagggtaaac |
30748267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 30058855 - 30058921
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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| T |
30058855 |
ggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagataagggtaaac |
30058921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 29870744 - 29870810
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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|||||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
29870744 |
ggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagataagggtaaac |
29870810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 30481890 - 30481956
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
30481890 |
ggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagataagggtaaac |
30481956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 30714627 - 30714565
Alignment:
| Q |
186 |
aaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| |
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| T |
30714627 |
aaatagagatcctaccagtaaaattgatttttgtgatggctaatgaggcagataagggtaaac |
30714565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 30678788 - 30678721
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagat-aagggtaaac |
248 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||| |
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| T |
30678788 |
ggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcagataaagggtaaac |
30678721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 29851863 - 29851925
Alignment:
| Q |
186 |
aaatagagatcctaccagtaaaattgaattttgcgatggtgattgagg-cagataagggtaaa |
247 |
Q |
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||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||| |
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|
| T |
29851863 |
aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagataagggtaaa |
29851925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 30058596 - 30058667
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaa----attgaattttgcgatggtgattgagg-cagataagggtaaac |
248 |
Q |
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||||||||||||||| ||||||| || ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
30058596 |
ggggaaatagagatcttaccagttaagtgaattgaattttgcgatggtgatcgaggccagataagggtaaac |
30058667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 40661590 - 40661667
Alignment:
| Q |
98 |
ataatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaagccaaacaaaagaagggtgta |
175 |
Q |
| |
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|||||||||||||| ||| |||||||||||||| || ||| |||| | ||||| ||| ||||||| || ||||||||| |
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| T |
40661590 |
ataatgagaatatacaacaatttttgaataaaaatccagtcaattgagcacttgaaatccaaacacaaaaagggtgta |
40661667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 26705819 - 26705885
Alignment:
| Q |
182 |
ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac |
248 |
Q |
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||||||| ||||||| ||||| |||||| || ||||| ||||||||||||||||||||||||||||| |
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| T |
26705819 |
ggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagataagggtaaac |
26705885 |
T |
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