View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_27 (Length: 261)
Name: NF14258_high_27
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30573372 - 30573129
Alignment:
| Q |
1 |
aaaagttcctttaaatcaagatcagcaggggcaatagggactttgcctttgtcaatttactcgaacttcttcagctattccgtcacaccgataagattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573372 |
aaaagttcctttaaatcaagatcagcaggggcaatagggactttgcctttgtcaatttactcgaacttcttcagctattccgtcacaccgataagattat |
30573273 |
T |
|
| Q |
101 |
ataggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttctaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573272 |
ataggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttctaaatcaa |
30573173 |
T |
|
| Q |
201 |
gatcagcaggggagataggtaatttacctttgtcaacttcatcc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573172 |
gatcagcaggggagataggtaatttacctttgtcaacttcatcc |
30573129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 30569711 - 30569566
Alignment:
| Q |
95 |
gattatataggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttcta |
194 |
Q |
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||||||||||||||||| | ||||| || |||||||| |||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30569711 |
gattatataggtttcttcgaaaggaaaagcaaatatgttgctgcttctatgtcactctggagtactttcaatgaagccttcacttttagaagttcttcta |
30569612 |
T |
|
| Q |
195 |
aatcaagatcagcaggggagataggtaatttacctttgtcaacttc |
240 |
Q |
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| T |
30569611 |
aatcaagatcagcaagggaaatagagactttacctttgtcaacttc |
30569566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 30570007 - 30569890
Alignment:
| Q |
95 |
gattatataggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttcta |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||| |
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| T |
30570007 |
gattatataggtttctttgcaaggcgaaacaaagatgatgcgacctcaatgtcaccatctagctctttcaataaagccttcac-tttagaagttcctcta |
30569909 |
T |
|
| Q |
195 |
aatcaagatcagcagggga |
213 |
Q |
| |
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||||||||||||||||||| |
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| T |
30569908 |
aatcaagatcagcagggga |
30569890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 30569883 - 30569798
Alignment:
| Q |
60 |
ctcgaacttcttcagctattccgtcacaccgataagattatataggtttctttgcaaggagaatcaaatatgatgctgcctcaatg |
145 |
Q |
| |
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||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30569883 |
ctcgaccttcttcagctattcggtcacaagcataagattatataggtttctttgcaaggagaagcaaatatgatgctgcctcaatg |
30569798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 30573449 - 30573318
Alignment:
| Q |
104 |
ggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttctaaatcaagat |
203 |
Q |
| |
|
||||||||||||||||||| |||| ||||| | |||||| |||||||| ||||||||||||||||||||||| |||| |||||| | ||||||||||| |
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| T |
30573449 |
ggtttctttgcaaggagaaacaaagatgattcgacctcaacgtcaccatctagctctttcaatgaagccttcac-tttaaaagttcctttaaatcaagat |
30573351 |
T |
|
| Q |
204 |
cagcaggggagataggtaatttacctttgtcaa |
236 |
Q |
| |
|
||||||||| ||||| | ||| |||||||||| |
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|
| T |
30573350 |
cagcaggggcaatagggactttgcctttgtcaa |
30573318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 30573189 - 30573107
Alignment:
| Q |
3 |
aagttcctttaaatcaagatcagcaggggcaatagggactttgcctttgtcaatttactcgaacttcttcagctattccgtca |
85 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||| | ||| |||||||||| || || | ||||||||||| |||||||| |
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| T |
30573189 |
aagttcttctaaatcaagatcagcaggggagataggtaatttacctttgtcaacttcatccaccttcttcagctcttccgtca |
30573107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30569622 - 30569570
Alignment:
| Q |
3 |
aagttcctttaaatcaagatcagcaggggcaatagggactttgcctttgtcaa |
55 |
Q |
| |
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|||||| | |||||||||||||||| ||| ||||| |||||| |||||||||| |
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|
| T |
30569622 |
aagttcttctaaatcaagatcagcaagggaaatagagactttacctttgtcaa |
30569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 38419720 - 38419621
Alignment:
| Q |
107 |
ttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttctaaatcaagatcag |
206 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||| ||| | |||||||||||||||||||||||| |||||||||| |
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| T |
38419720 |
ttctttgcaaggagaagcaaagatgatgctgcctcaatgttaccatggagatctttcagtgatgtcttcacttttagaagttcttctaagtcaagatcag |
38419621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 38436210 - 38436104
Alignment:
| Q |
100 |
tataggtttctttgcaaggagaatcaaatatgatgctgcctcaatgtcaccatggagctctttcaatgaagccttcacttttagaagttcttctaaatca |
199 |
Q |
| |
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|||||| ||||||| ||| |||| |||| | |||| ||| || ||||||||||| |||||||||| |||| |||||||||||||||||||| ||| | | |
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| T |
38436210 |
tataggcttctttgaaagaagaagcaaagaagatgatgcatcgatgtcaccatgaagctctttcagcgaagacttcacttttagaagttcttttaagtta |
38436111 |
T |
|
| Q |
200 |
agatcag |
206 |
Q |
| |
|
||||||| |
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|
| T |
38436110 |
agatcag |
38436104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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