View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_high_34 (Length: 232)
Name: NF14258_high_34
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 6139991 - 6139783
Alignment:
| Q |
10 |
agtgagatgaattttctgtagtaaagaatattctcttcgttgtcaaccagtaaagactataaatcaatgaaagagacatatgtgtgtttaaaatgtgtgt |
109 |
Q |
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| T |
6139991 |
agtgatatgaattttctgtagtaaagaatattctcttccttgccaaccagtaaagactataaatcaatgaaagagacatatgtgtgtttaaaatatgtgt |
6139892 |
T |
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| Q |
110 |
aataatatcagaaaaagtattaaagtgatt-atgtaagaaaatgtatataatttgagtgaaaatttaattacctctgtacgcgcagagccactgttgcga |
208 |
Q |
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| T |
6139891 |
aataatatcagaaaaagtattaaagtgattaatgtaagaaaatgtatataatttgagtgaaaatttaattacctctatacgcgcagagccaccgttgcga |
6139792 |
T |
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| Q |
209 |
agatgatgt |
217 |
Q |
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| T |
6139791 |
agatgatgt |
6139783 |
T |
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