View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_high_4 (Length: 594)

Name: NF14258_high_4
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_high_4
NF14258_high_4
[»] chr4 (32 HSPs)
chr4 (8-423)||(1194070-1194488)
chr4 (429-587)||(10352884-10353038)
chr4 (429-587)||(30077631-30077785)
chr4 (429-587)||(36382346-36382499)
chr4 (429-587)||(30216742-30216896)
chr4 (451-587)||(1817752-1817884)
chr4 (429-585)||(50205079-50205231)
chr4 (444-587)||(29995983-29996122)
chr4 (436-587)||(44156671-44156818)
chr4 (429-571)||(3292912-3293050)
chr4 (436-569)||(42333794-42333923)
chr4 (429-569)||(43143602-43143738)
chr4 (444-587)||(48989356-48989495)
chr4 (429-571)||(13012201-13012339)
chr4 (429-571)||(6690251-6690389)
chr4 (429-587)||(25930721-25930875)
chr4 (429-571)||(20129323-20129461)
chr4 (429-571)||(28877266-28877404)
chr4 (429-571)||(47500786-47500924)
chr4 (444-587)||(26448081-26448219)
chr4 (444-584)||(40529043-40529179)
chr4 (444-568)||(17511252-17511373)
chr4 (475-587)||(6235579-6235687)
chr4 (438-584)||(29319708-29319850)
chr4 (500-571)||(13392897-13392968)
chr4 (500-571)||(13396036-13396107)
chr4 (429-571)||(26439295-26439433)
chr4 (429-571)||(34407300-34407438)
chr4 (430-571)||(43355918-43356055)
chr4 (500-571)||(35546033-35546104)
chr4 (429-546)||(30109969-30110084)
chr4 (436-516)||(48129986-48130062)
[»] chr6 (9 HSPs)
chr6 (436-587)||(29743303-29743450)
chr6 (429-587)||(28996743-28996897)
chr6 (436-587)||(33229336-33229483)
chr6 (429-571)||(398630-398768)
chr6 (429-587)||(18339119-18339273)
chr6 (431-584)||(13837836-13837985)
chr6 (429-584)||(34948761-34948912)
chr6 (444-498)||(31028449-31028503)
chr6 (431-498)||(24697902-24697969)
[»] chr3 (16 HSPs)
chr3 (429-587)||(19565501-19565655)
chr3 (429-587)||(45335888-45336041)
chr3 (429-571)||(6930910-6931048)
chr3 (429-587)||(33040966-33041120)
chr3 (429-571)||(34084138-34084276)
chr3 (429-587)||(45182994-45183148)
chr3 (430-587)||(27935192-27935345)
chr3 (429-587)||(11018212-11018366)
chr3 (444-571)||(6269442-6269565)
chr3 (444-571)||(19390174-19390297)
chr3 (436-587)||(35514286-35514429)
chr3 (436-571)||(22968460-22968591)
chr3 (428-587)||(40081741-40081894)
chr3 (429-571)||(39771803-39771941)
chr3 (429-569)||(6503587-6503723)
chr3 (438-546)||(5135291-5135397)
[»] chr5 (20 HSPs)
chr5 (436-587)||(43068897-43069044)
chr5 (429-587)||(37254654-37254808)
chr5 (430-587)||(33430335-33430488)
chr5 (431-587)||(17332551-17332703)
chr5 (429-584)||(39657509-39657660)
chr5 (429-571)||(13817990-13818128)
chr5 (446-584)||(16333879-16334013)
chr5 (429-571)||(26283334-26283472)
chr5 (429-587)||(31680380-31680534)
chr5 (431-584)||(10033942-10034091)
chr5 (448-587)||(36291403-36291538)
chr5 (429-571)||(1776392-1776530)
chr5 (429-571)||(3155647-3155785)
chr5 (429-571)||(12278876-12279014)
chr5 (436-587)||(16155017-16155164)
chr5 (436-571)||(31501732-31501863)
chr5 (444-571)||(36293637-36293760)
chr5 (429-571)||(39434709-39434847)
chr5 (439-571)||(19985962-19986090)
chr5 (429-546)||(28801300-28801415)
[»] chr8 (13 HSPs)
chr8 (429-587)||(36408564-36408718)
chr8 (429-569)||(34136843-34136979)
chr8 (429-587)||(29728386-29728540)
chr8 (436-584)||(15838306-15838449)
chr8 (429-587)||(16788025-16788179)
chr8 (430-587)||(3648794-3648947)
chr8 (438-587)||(9877242-9877387)
chr8 (429-569)||(4404021-4404157)
chr8 (429-571)||(23402121-23402259)
chr8 (448-587)||(42230971-42231104)
chr8 (429-571)||(39914528-39914665)
chr8 (436-587)||(2729196-2729343)
chr8 (444-546)||(3435297-3435397)
[»] scaffold0041 (1 HSPs)
scaffold0041 (436-587)||(52945-53092)
[»] chr7 (17 HSPs)
chr7 (429-568)||(34389075-34389210)
chr7 (447-586)||(38638237-38638372)
chr7 (436-587)||(40920003-40920150)
chr7 (429-587)||(35090181-35090335)
chr7 (429-587)||(36630829-36630983)
chr7 (429-571)||(14777123-14777261)
chr7 (445-587)||(26624775-26624913)
chr7 (429-587)||(37002144-37002298)
chr7 (429-584)||(3114099-3114250)
chr7 (429-571)||(8394138-8394276)
chr7 (429-585)||(8867733-8867885)
chr7 (429-584)||(5555500-5555651)
chr7 (429-587)||(43184468-43184622)
chr7 (430-571)||(33685578-33685715)
chr7 (444-587)||(36658209-36658348)
chr7 (500-587)||(7002805-7002892)
chr7 (500-587)||(7048676-7048763)
[»] chr2 (19 HSPs)
chr2 (429-587)||(45418596-45418750)
chr2 (429-586)||(771012-771165)
chr2 (430-587)||(44084603-44084756)
chr2 (429-584)||(16405613-16405764)
chr2 (429-571)||(6403820-6403958)
chr2 (429-584)||(42439999-42440150)
chr2 (429-571)||(41251650-41251788)
chr2 (436-584)||(35962735-35962879)
chr2 (444-587)||(12756837-12756976)
chr2 (429-586)||(8147364-8147518)
chr2 (444-571)||(2285890-2286013)
chr2 (438-569)||(8059351-8059478)
chr2 (429-584)||(32127144-32127295)
chr2 (436-570)||(18981636-18981766)
chr2 (429-587)||(31581622-31581776)
chr2 (429-571)||(17445057-17445193)
chr2 (436-587)||(26162702-26162846)
chr2 (436-557)||(2958131-2958247)
chr2 (444-546)||(4555250-4555350)
[»] chr1 (10 HSPs)
chr1 (429-587)||(3828997-3829150)
chr1 (429-586)||(17445326-17445479)
chr1 (429-587)||(32982056-32982210)
chr1 (436-587)||(321377-321524)
chr1 (429-571)||(26144268-26144406)
chr1 (431-587)||(42310941-42311093)
chr1 (429-568)||(35907565-35907700)
chr1 (429-584)||(7433458-7433609)
chr1 (438-546)||(41972314-41972420)
chr1 (458-526)||(23313281-23313345)
[»] scaffold2142 (1 HSPs)
scaffold2142 (429-571)||(535-673)
[»] scaffold0502 (1 HSPs)
scaffold0502 (429-587)||(5243-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (429-571)||(31493-31631)
[»] scaffold0002 (1 HSPs)
scaffold0002 (429-571)||(480473-480611)
[»] scaffold0069 (1 HSPs)
scaffold0069 (436-571)||(17862-17993)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 1194070 - 1194488
Alignment:
Q  8 tttgtaaatatttt-ctggtgatgttcttattttgcgcgccttgtgtaggatgcatcatcgtggttattatgatatctcattttgatttatttnnnnnnn 106  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||            
T  1194070 tttgtaaatatttttctggtggtgttttcattttgcgcgccttgtgcaggatgcatcatcatggttattatgatatctcattttgatttattcaaaaaaa 1194169  T
Q  107 nn---cttgagattttacaaaagagactcaggataagggacaattggtannnnnnnaatatgggaccaaaatcacaacattttaaaagatagagaaaaaa 203  Q
         |||||| |||| |||||||||||||  ||| |||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||    
T  1194170 aaaaacttgaggttttgcaaaagagactcaacataggggacaattggtatttttttaatatgggaccaaaattacaacattttaaaagatagagaaaaaa 1194269  T
Q  204 gtgcatttaaatcnnnnnnnntcagagtaaattatatcgactcccctaaattttatcaaaatgacattcacttcccctctattatttgtaaaagcactaa 303  Q
    || |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194270 gtacatttaaat-aaataaaatcagagtaaattatatcgactcccctaaattttatcaaaatgacattcacttcccctctattatttgtaaaagcactaa 1194368  T
Q  304 tcttccttgaacttaacactctgaaacgccattagaaaaaggggttgccctgcttgacaaatttgttgttccttcttcaaataatcagtttgtttcttaa 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1194369 tcttccttgaacttaacactctgaaacgccattagaaaaaggggttgccctgcttgacaaatttgttgttgcttcttcaaataatcagtttgtttcttaa 1194468  T
Q  404 acttcttctcccttcattgt 423  Q
    ||||||||||||||||||||    
T  1194469 acttcttctcccttcattgt 1194488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 10353038 - 10352884
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||    || ||||||||||| |||||||||||    
T  10353038 ggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaa----aaggaaaaatttgggcaatctgaaaa 10352943  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10352942 ttcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctc 10352884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 30077785 - 30077631
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  30077785 ggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaa----aaagaaaaatttggacaatctgaaaa 30077690  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || |||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  30077689 tttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctc 30077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 36382499 - 36382346
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  |||||||||||| |||||||||||||||||     |||||||||||||||||||||||||    
T  36382499 ggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-----aagaaaaatttggacaatctgaaaa 36382405  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  36382404 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 30216896 - 30216742
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||||||    |||||||||||||| |||||||||||    
T  30216896 ggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 30216801  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||| |||||||| ||||||||||||||||||||||||| || ||| ||||||||    
T  30216800 ttctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 451 - 587
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  451 atttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctc 550  Q
    |||||| |||||||||||||| | |||||| |||||| |||||||     |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacattta----taaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctc 1817847  T
Q  551 ggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  1817848 ggaattttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 429 - 585
Target Start/End: Complemental strand, 50205231 - 50205079
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| || |||| ||||||||||||| |||||||||||||||| |||||   ||||||||| ||||||    ||||||||| ||||||||||||||||    
T  50205231 ggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaa----aaagaaaaaattggacaatctgaaaa 50205136  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatc 585  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||    
T  50205135 ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 444 - 587
Target Start/End: Complemental strand, 29996122 - 29995983
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    |||||||||||||  ||||||||  |||||||||||| ||||||||||||||| |    |||||||||||||| |||||||||||||||| |||||||||    
T  29996122 atcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacga----aaagaaaaatttgggcaatctgaaaattcttgcacgcaaat 29996027  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || ||||||||||||||| ||||||||| || ||||||||||||    
T  29996026 agttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 44156671 - 44156818
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||||| ||||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    |||||||| |||||||||||||||||||||  |    
T  44156671 cgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaattttggacaatctgaaaattctctc 44156766  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  44156767 acgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 3293050 - 3292912
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  3293050 ggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 3292955  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  3292954 ttctcacacgcaaataggtctcggaattttatttagcacacta 3292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 436 - 569
Target Start/End: Complemental strand, 42333923 - 42333794
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||||||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| ||||||||||||||| ||    
T  42333923 cgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcac 42333828  T
Q  536 acgcaaataggtctcggaattttatttagcacac 569  Q
    ||||||||||||||||||||||||||||||||||    
T  42333827 acgcaaataggtctcggaattttatttagcacac 42333794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 429 - 569
Target Start/End: Complemental strand, 43143738 - 43143602
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  43143738 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 43143643  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacac 569  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  43143642 ttctcacacgcaaataggtctcggaattttatttagcacac 43143602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 444 - 587
Target Start/End: Original strand, 48989356 - 48989495
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| ||||||| | |||||  |||||| |||||||||| ||||||    |||||||||||||| ||||||||||||||| | ||||||||    
T  48989356 atcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcatacgcaaat 48989451  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||||||||||||||||| || ||| ||||||||    
T  48989452 aggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 13012201 - 13012339
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  13012201 ggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 13012296  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  13012297 ttgtcacacgtaaataggtcttggaattttatttggcacacta 13012339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 6690389 - 6690251
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| ||| |||||||    
T  6690389 ggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaaactgaaaa 6690294  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  6690293 ttctcacacgcaaataggtctcgaaattttatttagcacacta 6690251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 25930721 - 25930875
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  ||||| |||||  |||||||||||||||||    |||||||||||||| |||| ||||||    
T  25930721 ggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaa 25930816  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  25930817 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 20129323 - 20129461
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  20129323 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 20129418  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| ||||||||||  ||||||||||| ||||||||    
T  20129419 ttgtcacacgtaaataggtcttagaattttatttggcacacta 20129461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 28877404 - 28877266
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    ||||||| |||||  ||||||||||||| |||||||||| ||||| ||||| | ||||||||  ||| ||    ||||||||||||||  ||||| ||||    
T  28877404 ggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataa----aaagaaaaatttgggaaatctaaaaa 28877309  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  28877308 ttctcacacgcaaataggtctcggaattttatttagcacacta 28877266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 47500786 - 47500924
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||      ||||||||||||||| |||| ||||||    
T  47500786 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----tgaaaagaaaaatttgggcaatttgaaaa 47500881  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  47500882 ttgtcacacgtaaataggtcttggaattttatttggcacacta 47500924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 587
Target Start/End: Original strand, 26448081 - 26448219
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| ||||||| ||| |||| |||||| |||||||||| ||||||     || |||||||||| ||||||||||||||| | || |||||    
T  26448081 atcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaa-----aaaaaaaatttgggcaatctgaaaattctcatacacaaat 26448175  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||||||||||||||||||||||| || |||||| |||||    
T  26448176 aggtttcggaattttatttagcacactattggcggatttatctc 26448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 584
Target Start/End: Original strand, 40529043 - 40529179
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| ||||||| |  ||||| ||||  ||||||||||||||||||    ||||||||||||||||||| |||||||| | ||| ||||||    
T  40529043 atcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaa----aaagaaaaatttggacaatttgaaaattgtcacatgcaaat 40529138  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    |||||| ||||||||||||||||||||| || ||| |||||    
T  40529139 aggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 444 - 568
Target Start/End: Complemental strand, 17511373 - 17511252
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||| |||||||| ||||||||||||    
T  17511373 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaattgttacacgcaaat 17511278  T
Q  544 aggtctcgg-aattttatttagcaca 568  Q
    |||||| || ||||||||||||||||    
T  17511277 aggtcttggaaattttatttagcaca 17511252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 6235579 - 6235687
Alignment:
Q  475 aaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtg 574  Q
    |||||| |||||||||||||||||    |||||||||||||| |||| |||||||| | |||||||||||||||| ||||||||||||||||||||| ||    
T  6235579 aaaagtccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattg 6235674  T
Q  575 tcggattcatctc 587  Q
     ||| ||||||||    
T  6235675 acgggttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 438 - 584
Target Start/End: Complemental strand, 29319850 - 29319708
Alignment:
Q  438 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 537  Q
    ||||| ||||||||||||| |||||||||  ||||| ||||   |||||||||||||||||    |||||||||||||  ||||||||||||| | ||||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaa----aaagaaaaatttgagcaatctgaaaattgtcacac 29319755  T
Q  538 gcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
     |||||| |||| ||||||||||||||||||||| || ||| |||||    
T  29319754 acaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 500 - 571
Target Start/End: Complemental strand, 13392968 - 13392897
Alignment:
Q  500 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  13392968 caaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacacta 13392897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 500 - 571
Target Start/End: Complemental strand, 13396107 - 13396036
Alignment:
Q  500 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  13396107 caaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacacta 13396036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 26439433 - 26439295
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  26439433 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 26439338  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  26439337 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 26439295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 34407438 - 34407300
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  34407438 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 34407343  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  34407342 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 34407300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 430 - 571
Target Start/End: Original strand, 43355918 - 43356055
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| ||||||||||||    
T  43355918 gtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaat 43356013  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    | | ||||| |||||||||| | ||||||||||  |||||||    
T  43356014 tgtcacacgtaaataggtcttgaaattttatttgacacacta 43356055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 571
Target Start/End: Original strand, 35546033 - 35546104
Alignment:
Q  500 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  35546033 caaaaagaaaattttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacacta 35546104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 546
Target Start/End: Original strand, 30109969 - 30110084
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggac--aatctgaa 526  Q
    |||||| ||| ||| ||||||||||||| ||||||||| |||| |  ||||  |||||||||| |||    |||||||||||||||||||  ||| ||||    
T  30109969 ggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacactta----caaaaagaaaaatttggacaaaatatgaa 30110064  T
Q  527 aattcttacacgcaaatagg 546  Q
    || ||| |||||||||||||    
T  30110065 aaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 48129986 - 48130062
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg 516  Q
    ||||||| ||||||||||||| || |||||| |||||| ||||| ||||||||||| |||    |||||||||||||||||    
T  48129986 cgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacactta----caaaaagaaaaatttgg 48130062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 29743303 - 29743450
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    
T  29743303 cgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacag----aaagaaaaatttgggcaatctgaaaattcttac 29743398  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29743399 acgcaaataggtctcggaattttatttagcacactagtgccggattcatctc 29743450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 28996743 - 28996897
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| || |||| ||||||||||||| | ||||||| |||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  28996743 ggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 28996838  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  28996839 ttctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 587
Target Start/End: Complemental strand, 33229483 - 33229336
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| |||||| ||||||  |||||||| |||||| |||||| |||||||||||||     ||||||||||||||||| ||||||||||||||||||    
T  33229483 cgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacattt----ccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| ||||| ||||||| |||||||||||||||||| || ||||||||||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 398630 - 398768
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  398630 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 398725  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  398726 ttgtcacacgtaaataggtcttggaattttatttggcacacta 398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 18339119 - 18339273
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||| | |||||   ||||||||| ||||||    |||||||| ||||| |||||||||||    
T  18339119 ggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaa----aaagaaaattttgggcaatctgaaaa 18339214  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  18339215 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 431 - 584
Target Start/End: Original strand, 13837836 - 13837985
Alignment:
Q  431 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 530  Q
    ||||||||| || |||||||||||||  ||||||||  ||||| |||||  ||| |||||||||||||    |||||||||||||| |||||||||||||    
T  13837836 tcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 13837931  T
Q  531 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
     | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  13837932 gtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 34948912 - 34948761
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| | ||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  34948912 ggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 34948817  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||| ||||||| ||| | ||||||||||||||||||| || ||| |||||    
T  34948816 ttgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 31028503 - 31028449
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaa 498  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  31028503 atcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaa 31028449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 24697969 - 24697902
Alignment:
Q  431 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaa 498  Q
    |||| ||||||||||||||||||||| ||||||||  |||||| |||||  |||||||||| ||||||    
T  24697969 tcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaa 24697902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 19565655 - 19565501
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| |||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||    ||||||||||||||||||||||||||    
T  19565655 ggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaa----aaagaaaaatttggacaatctgaaaa 19565560  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  19565559 ttcttacacgcaaataggtctcggaattttatttagcacactagtaccggattcatctc 19565501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 45335888 - 45336041
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    |||||||||| ||| |||||||||||    
T  45335888 ggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagt-cattaacacatttacaa----aaagaaaaatctgggcaatctgaaaa 45335982  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45335983 ttcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctc 45336041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 6931048 - 6930910
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | |||||||||||||| |||||   ||||||||||||||||    |||||||||||| | |||||||||||    
T  6931048 ggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaa----aaagaaaaatttaggcaatctgaaaa 6930953  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  6930952 ttctcacacgcaaataggtctcggaattttatttagcacacta 6930910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 33040966 - 33041120
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||||||||||| || |||||||||| || |||||| |||||| ||||| | ||||||||| ||||||    ||||||||||||| ||||| ||||||    
T  33040966 ggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgaacaatttgaaaa 33041061  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  33041062 ttttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 34084276 - 34084138
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||| ||| ||||||||||||| ||||||| || |||||||||||| |||||||||||||||||    |||||||||||||| |||| ||||||    
T  34084276 ggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatatgaaaa 34084181  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | |||||||||||||||| |||||||||||||||||||||    
T  34084180 ttatcacacgcaaataggtcttggaattttatttagcacacta 34084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 45182994 - 45183148
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  45182994 ggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 45183089  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| |||| ||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  45183090 ttctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 430 - 587
Target Start/End: Original strand, 27935192 - 27935345
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||| ||||||| ||||||||||||| ||||||| | |||||| ||||| ||||||||||| ||||||    |||||||||||||| ||||||||||||    
T  27935192 gtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 27935287  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| | ||| ||||||||||||||||||||||||||| |||| || ||| ||||||||    
T  27935288 tctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 11018366 - 11018212
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| | ||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  11018366 ggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 11018271  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||||||||||||||||| |||||||||||||||||| | || ||| ||||||||    
T  11018270 ttctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 571
Target Start/End: Complemental strand, 6269565 - 6269442
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  6269565 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 6269470  T
Q  544 aggtctcggaattttatttagcacacta 571  Q
    |||||| |||||||||||||||||||||    
T  6269469 aggtcttggaattttatttagcacacta 6269442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 571
Target Start/End: Original strand, 19390174 - 19390297
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| |||||||||  ||||| ||||||  ||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  19390174 atcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 19390269  T
Q  544 aggtctcggaattttatttagcacacta 571  Q
    |||||| |||||||||||||||||||||    
T  19390270 aggtcttggaattttatttagcacacta 19390297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 35514286 - 35514429
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||  || | ||||||||||| |||||| ||||||||||        |||||||||||||||||||||| |||||||||| ||    
T  35514286 cgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca--------caaaaagaaaaatttggacaatatgaaaattctcac 35514377  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
     ||||||||||||| |||||||||||| |||||||| || ||| ||||||||    
T  35514378 tcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 436 - 571
Target Start/End: Complemental strand, 22968591 - 22968460
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| |||||||||   |||| |||||  |||||||||||||||||    |||||||||||||| |||||| |||||| | ||    
T  22968591 cgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctaaaaattgtcac 22968496  T
Q  536 acgcaaataggtctcggaattttatttagcacacta 571  Q
    ||| |||||||||| | |||||||||||||||||||    
T  22968495 acgtaaataggtcttgaaattttatttagcacacta 22968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 587
Target Start/End: Complemental strand, 40081894 - 40081741
Alignment:
Q  428 aggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaa 527  Q
    ||||||| ||||||| |||||||||||||  ||||||||  ||||||||| | ||||||||||||||||||    |||||||||||||| |||| |||||    
T  40081894 aggtcgcccgggctcgatcgataatttttgaacattagactcaaccaaaa-gctcattaacacatttacaa----aaagaaaaatttgggcaatttgaaa 40081800  T
Q  528 attcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| | |||||||||||| ||| || ||||| |||||||||||| || ||| ||||||||    
T  40081799 attgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 39771803 - 39771941
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  39771803 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 39771898  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  39771899 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 39771941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 569
Target Start/End: Complemental strand, 6503723 - 6503587
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| |||||| |||||| || ||||||  ||||| |||||   |||| |||| ||||||    ||||||||||||   |||||||||||    
T  6503723 ggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaa----aaagaaaaatttaagcaatctgaaaa 6503628  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacac 569  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  6503627 ttctcacaggcaaataggtctcggatttttatttagcacac 6503587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 546
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  438 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggac--aatctgaaaattcttac 535  Q
    ||||| |||||| ||||||  |||||||| |||||| ||||| ||||||||||| |||    |||||||||||||||||||  |||| ||||||||| ||    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacactta----caaaaagaaaaatttggacaaaatccgaaaattctcac 5135386  T
Q  536 acgcaaatagg 546  Q
    || ||||||||    
T  5135387 acacaaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 43068897 - 43069044
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||| ||||||||| ||||||||| |||||| |||||| |||||||||||||||||    |||||||||||||| ||||||||||||||||||    
T  43068897 cgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattcttac 43068992  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | | ||||| |||||||||||||||||||||||||| || ||||||||||||    
T  43068993 atgtaaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 37254654 - 37254808
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| | ||||| ||||||||||||| ||||||||| |||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  37254654 ggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 37254749  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||| ||||||||    
T  37254750 ttctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 430 - 587
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| ||||||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 33430430  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  33430431 tctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 431 - 587
Target Start/End: Complemental strand, 17332703 - 17332551
Alignment:
Q  431 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 530  Q
    |||| ||||||| ||||||||||||| || |||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||||    
T  17332703 tcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaatt 17332608  T
Q  531 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
     | |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  17332607 ttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 39657660 - 39657509
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    ||||| |||||||| || |||||||||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  39657660 ggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 39657565  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  39657564 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 13817990 - 13818128
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||||||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  13817990 ggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 13818085  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | |||||||||||||||| |||| ||||||||||||||||    
T  13818086 ttgtcacacgcaaataggtcttggaaatttatttagcacacta 13818128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 446 - 584
Target Start/End: Complemental strand, 16334013 - 16333879
Alignment:
Q  446 cgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaatag 545  Q
    ||||||||||| |||||||||| ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgcaaatag 16333918  T
Q  546 gtctcggaattttatttagcacactagtgtcggattcat 584  Q
    |||| ||||||||||||||||||||| || |||||||||    
T  16333917 gtcttggaattttatttagcacactattgacggattcat 16333879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 26283472 - 26283334
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||     |||||||||||||||| |||||||||||    
T  26283472 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 26283377  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  26283376 ttgtcacacgtaaataggtcttggaattttatttggcacacta 26283334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 31680380 - 31680534
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  31680380 ggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 31680475  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  31680476 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 431 - 584
Target Start/End: Original strand, 10033942 - 10034091
Alignment:
Q  431 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 530  Q
    |||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||||    
T  10033942 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 10034037  T
Q  531 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
     | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  10034038 gtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 448 - 587
Target Start/End: Original strand, 36291403 - 36291538
Alignment:
Q  448 ataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggt 547  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||    |||||||||||||| |||||| |||||| |||||| |||||||||    
T  36291403 ataatttttgcacattagatctaacctaaaagttcattaacacatttacaa----aaagaaaaatttgggcaatctcaaaattattacacacaaataggt 36291498  T
Q  548 ctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| |||||||||||| ||||||| || ||| ||||||||    
T  36291499 ctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 1776530 - 1776392
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| |||||||||||||  |||||| |  |||||||||||| |||||||||||||||||    |||||||||||||| |||| ||||||    
T  1776530 ggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaa 1776435  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | |||||||||||||||| |||||||||||||||||||||    
T  1776434 ttgtcacacgcaaataggtcttggaattttatttagcacacta 1776392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 3155785 - 3155647
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||||||||||| ||| ||||||||| |||||| ||  ||||| |||||| ||||||||||||||     ||||||||||||||||||||||||||||    
T  3155785 ggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta----taaaaagaaaaatttggacaatctgaaaa 3155690  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | |||||||||||| ||| |||||||||||||||||||||    
T  3155689 ttgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 12279014 - 12278876
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||| ||| ||||||||||||| ||||||||| |||||| ||| |   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  12279014 ggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 12278919  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  12278918 ttctcacacgcaaataggtctcggaattttatttagcacacta 12278876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 16155017 - 16155164
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||| | ||||||||||||| | ||    
T  16155017 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttaggcaatctgaaaattgtcac 16155112  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||| ||||||||||||||||||||| || | ||||||||||    
T  16155113 acgcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 436 - 571
Target Start/End: Complemental strand, 31501863 - 31501732
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||||||  |    
T  31501863 cgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcgc 31501768  T
Q  536 acgcaaataggtctcggaattttatttagcacacta 571  Q
    |||||||||||||||| |||||||||||||||||||    
T  31501767 acgcaaataggtctcgaaattttatttagcacacta 31501732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 444 - 571
Target Start/End: Complemental strand, 36293760 - 36293637
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    |||||||||||||  ||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  36293760 atcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 36293665  T
Q  544 aggtctcggaattttatttagcacacta 571  Q
    |||||| |||||||||||||||||||||    
T  36293664 aggtcttggaattttatttagcacacta 36293637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 39434709 - 39434847
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    || ||||||||||| |||||||||||    
T  39434709 ggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaa----aatgaaaaatttgggcaatctgaaaa 39434804  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||| | ||||||||||  ||||||||||||||||||||    
T  39434805 ttgtcacatgtaaataggtctttgaattttatttagcacacta 39434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 439 - 571
Target Start/End: Original strand, 19985962 - 19986090
Alignment:
Q  439 gctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacg 538  Q
    |||| ||||||||||||| |||||||||| ||||| |||||| ||||| |||||||||||    ||||||||||||||  ||||| |||||| | |||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaa----aaagaaaaatttgggtaatctaaaaattatcacacg 19986057  T
Q  539 caaataggtctcggaattttatttagcacacta 571  Q
    ||||||||||| | ||||||||||| |||||||    
T  19986058 caaataggtcttgaaattttatttaacacacta 19986090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 546
Target Start/End: Original strand, 28801300 - 28801415
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaa 526  Q
    |||||| | ||||| ||||||||||||| |||||||||||||| | |||||  |||||||||| |||    |||||||||||||||||  | ||| ||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacactta----caaaaagaaaaatttgggaaaaatatgaa 28801395  T
Q  527 aattcttacacgcaaatagg 546  Q
    |||||| |||||||||||||    
T  28801396 aattctcacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 36408564 - 36408718
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||    |||||||| ||| | |||| ||||||    
T  36408564 ggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaa----aaagaaaatttttggcaatttgaaaa 36408659  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||| |||||||||| |||||||||||| ||||||| || ||||||||||||    
T  36408660 ttcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 429 - 569
Target Start/End: Complemental strand, 34136979 - 34136843
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  34136979 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 34136884  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacac 569  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  34136883 ttctcacacgcaaataggtctcgaaattttatttagcacac 34136843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 29728540 - 29728386
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| || |||| |||||||| |||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  29728540 ggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 29728445  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | ||||||||||||||||  |||||||||||||||||||| || ||| ||||||||    
T  29728444 ttgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 15838306 - 15838449
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| || |||||||||| ||||||| |  |||||||||||| |||||||||||||||||     ||||||||||||| ||||||||||||| | ||    
T  15838306 cgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-----aagaaaaatttgggcaatctgaaaattttcac 15838400  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    |||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  15838401 acgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 16788179 - 16788025
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||| ||||    
T  16788179 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatcttaaaa 16788084  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
     ||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  16788083 ctctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 430 - 587
Target Start/End: Complemental strand, 3648947 - 3648794
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||| ||||| ||||||||||||    
T  3648947 gtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaattttgggcaatctgaaaat 3648852  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | | |||||||| ||||| | ||||||||||||||||||||| || ||| ||||||||    
T  3648851 tgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 438 - 587
Target Start/End: Original strand, 9877242 - 9877387
Alignment:
Q  438 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 537  Q
    ||||| || |||||||||| ||||||||| | |||| ||||||  ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||     
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacat 9877337  T
Q  538 gcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  9877338 gcaaataggtctcgaaattttatttagcacactattgtcaaattcatctc 9877387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 429 - 569
Target Start/End: Original strand, 4404021 - 4404157
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||| | |||    ||||||||||||||||| |||||| ||||    
T  4404021 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatactta----caaaaagaaaaatttgggcaatctaaaaa 4404116  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacac 569  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4404117 ttctcacacgcaaataggtctcggaattttatttagcacac 4404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 23402121 - 23402259
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||| ||| || |||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  23402121 ggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 23402216  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  23402217 ttctcacacgcaaataggtctcgaaattttatttaacacacta 23402259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 448 - 587
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  448 ataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggt 547  Q
    ||||||||| ||||||| |||||||  |||||| |||||||||  ||||||    |||||||||||||| |||| |||||||||| | | ||||||||||    
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaa----aaagaaaaatttgggcaatttgaaaattctcatatgcaaataggt 42231064  T
Q  548 ctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| |||||||||||||||||||| || ||||||||||||    
T  42231065 ctcagaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 39914528 - 39914665
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||      |||| |||||||||| |||| ||||||    
T  39914528 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta-----taaaaaaaaaatttgggcaatttgaaaa 39914622  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||| | |||||||||| |||||||||||| ||||||||    
T  39914623 ttgtcacaagtaaataggtcttggaattttatttggcacacta 39914665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 436 - 587
Target Start/End: Complemental strand, 2729343 - 2729196
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||||||||||| |||||| | |||||  |||||||||| |||     |||||||||  ||| | |||| |||||| ||| |     
T  2729343 cgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacactta----taaaaagaaattttttggcaatttgaaaactctcat 2729248  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||||  ||||||||||||||||||| ||  |||||||||||    
T  2729247 acgcaaataggtctcaaaattttatttagcacactattgatggattcatctc 2729196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 546
Target Start/End: Original strand, 3435297 - 3435397
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttacacgcaa 541  Q
    ||||||||||||| ||||||||| |||||| ||||   |||||||||| |||    |||||||||||||||||  | |||||||||||||| | ||||||    
T  3435297 atcgataatttttgcacattagacccaacccaaaaacccattaacacactta----caaaaagaaaaatttgggcaaaatctgaaaattctcaaacgcaa 3435392  T
Q  542 atagg 546  Q
    |||||    
T  3435393 atagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 52945 - 53092
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| ||||||||||  |||| |||||   ||||||||||||||||    |||||||||||||||||||||||||||||| ||    
T  52945 cgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaa----aaagaaaaatttggacaatctgaaaattctcac 53040  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  53041 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 429 - 568
Target Start/End: Complemental strand, 34389210 - 34389075
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||||||    |||||||||||||| |||||||||||    
T  34389210 ggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 34389115  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcaca 568  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  34389114 ttctcacacgcaaataggtctcggaattttatttagcaca 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 447 - 586
Target Start/End: Complemental strand, 38638372 - 38638237
Alignment:
Q  447 gataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaatagg 546  Q
    |||||||||| |||||||||||||||| ||||||  ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||||||||||||    
T  38638372 gataatttttgcacattagatccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacacgcaaatagg 38638277  T
Q  547 tctcggaattttatttagcacactagtgtcggattcatct 586  Q
    ||||||||||||||||||||||||| || ||| |||||||    
T  38638276 tctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 587
Target Start/End: Complemental strand, 40920150 - 40920003
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| ||||||||||  |||| |||||   ||||||||||||||||    |||||||||||||||||||||||||||||| ||    
T  40920150 cgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaa----aaagaaaaatttggacaatctgaaaattctcac 40920055  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  40920054 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 35090181 - 35090335
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    ||||||||||||||  ||||||||||    
T  35090181 ggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggtaatctgaaaa 35090276  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 36630829 - 36630983
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| ||||||| |  |||||||||||| |||||||||||||||||    |||||||||||||| |||||||||||    
T  36630829 ggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 36630924  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||||||||||||||| ||||||||| ||||||||||| || ||| ||||||||    
T  36630925 ttgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 14777261 - 14777123
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  14777261 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 14777166  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  14777165 ttgtcacacgtaaataggtcttggaattttatttagcacacta 14777123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 445 - 587
Target Start/End: Original strand, 26624775 - 26624913
Alignment:
Q  445 tcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaata 544  Q
    |||||||||||| || |||||| |||| | ||||||| ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||||||||||    
T  26624775 tcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacacgcaaata 26624870  T
Q  545 ggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||||||||||||||||||||||||||| || ||| ||||||||    
T  26624871 ggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 37002298 - 37002144
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    ||||| |||| ||| ||||||||||||| ||||||||| |||| | ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  37002298 ggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 37002203  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  37002202 ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 3114250 - 3114099
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  3114250 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 3114155  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||| ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  3114154 ttgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 8394138 - 8394276
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| ||||||| |  |||||||||||| |||||||||||||||||    || ||||||||||| |||||||||||    
T  8394138 ggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa----aaggaaaaatttgggcaatctgaaaa 8394233  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  8394234 ttgtcacacgtaaataggtcttggaattttatttagcacacta 8394276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 585
Target Start/End: Complemental strand, 8867885 - 8867733
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| || |||||| |||| | |||||   ||||| ||||||||||    |||||||||||||| ||||| |||||    
T  8867885 ggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaa----aaagaaaaatttgggcaatcggaaaa 8867790  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatc 585  Q
    || | |||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  8867789 ttttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 5555500 - 5555651
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  ||||||| |||||||||    |||||||||||||| |||||||||||    
T  5555500 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaa----aaagaaaaatttgggcaatctgaaaa 5555595  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||| ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  5555596 ttgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 43184622 - 43184468
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||||||||||| ||||||||||||||| ||| |||   |||| |||||   ||||||| | ||||||    |||||||||||||| |||||||||||    
T  43184622 ggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaa----aaagaaaaatttgggcaatctgaaaa 43184527  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  43184526 ttctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 430 - 571
Target Start/End: Original strand, 33685578 - 33685715
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||||||||||| ||||||||||||| ||||||| | |||||| |||||  |||||||||| ||||||    |||||||||||||| ||||||||||||    
T  33685578 gtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 33685673  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    ||| | ||||||||| |||||  |||||||||||||||||||    
T  33685674 tctcatacgcaaatatgtctcataattttatttagcacacta 33685715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 587
Target Start/End: Original strand, 36658209 - 36658348
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| |||||| || |||||| |||||   |||||||    ||| | |||||| |||||||||| ||||||||||||||| ||||||||||    
T  36658209 atcgataatttttgcacattggacccaaccgaaaagccaattaaca----tactaacaaaaataaaaatttgggcaatctgaaaattctcacacgcaaat 36658304  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||||||||||||||||||||||||| || ||| ||||||||    
T  36658305 aggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 500 - 587
Target Start/End: Original strand, 7002805 - 7002892
Alignment:
Q  500 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||    
T  7002805 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 500 - 587
Target Start/End: Original strand, 7048676 - 7048763
Alignment:
Q  500 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||    
T  7048676 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 45418596 - 45418750
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| | |||||||||||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  45418596 ggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 45418691  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  45418692 ttctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 429 - 586
Target Start/End: Original strand, 771012 - 771165
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| |||||||| |||| ||||||||| ||||||||||||  |||||||||| ||||||    |||||||||||||| |||||||||||    
T  771012 ggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 771107  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 586  Q
    |||| ||||||||||||||||||||| ||||||||||||| || || ||| |||||||    
T  771108 ttctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 430 - 587
Target Start/End: Complemental strand, 44084756 - 44084603
Alignment:
Q  430 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 529  Q
    ||||| ||||||| ||||||||||||| ||||||| | |||| | ||||||||||||||||| ||||||    |||||||||||||| ||||||||||||    
T  44084756 gtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 44084661  T
Q  530 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    ||| | ||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  44084660 tctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 16405613 - 16405764
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||||||||||||||||| ||| |||||  ||||| ||||| |||||||||||||||     ||||||||||||||||||||||||||||    
T  16405613 ggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattta----taaaaagaaaaatttggacaatctgaaaa 16405708  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | ||||||||||| |||| ||||||||||||||||||||| || ||| |||||    
T  16405709 ttgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 6403958 - 6403820
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||     |||||||||||||||| |||||||||||    
T  6403958 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 6403863  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  6403862 ttgtcacacgtaaataggtcttggaattttatttggcacacta 6403820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 42439999 - 42440150
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||   |||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  42439999 ggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 42440094  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||||||||||||||| | ||||||||||||||||||| || |||||||||    
T  42440095 ttgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcat 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 41251788 - 41251650
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  41251788 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 41251693  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  41251692 ttgtcacacgtaaataggtcttggaattttatttagcacacta 41251650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 35962735 - 35962879
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| |||||||||  ||||| ||||| | ||||||||||||||||    |||||||| ||||| ||||||||||||| | ||    
T  35962735 cgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaa----aaagaaaattttgggcaatctgaaaattgtcac 35962830  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  35962831 acacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 587
Target Start/End: Complemental strand, 12756976 - 12756837
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||  ||||||||||||||| ||||||||||    
T  12756976 atcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgagcaatctgaaaattctcacacgcaaat 12756881  T
Q  544 aggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | |||||||||||||||||||||||||| || ||| ||||||||    
T  12756880 aagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 586
Target Start/End: Original strand, 8147364 - 8147518
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||| ||| ||||||||| |||||  ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  8147364 ggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 8147459  T
Q  529 -ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 586  Q
     |||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||||||    
T  8147460 attctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 444 - 571
Target Start/End: Original strand, 2285890 - 2286013
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 543  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||||||||||| |    || ||||||||||  ||||||||||||| | ||||||||||    
T  2285890 atcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacga----aaggaaaaatttgagcaatctgaaaattgtcacacgcaaat 2285985  T
Q  544 aggtctcggaattttatttagcacacta 571  Q
    |||| | |||||||||||||||||||||    
T  2285986 aggttttggaattttatttagcacacta 2286013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 438 - 569
Target Start/End: Complemental strand, 8059478 - 8059351
Alignment:
Q  438 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 537  Q
    ||||||||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||| |||||||||| ||||    
T  8059478 ggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaa----aaagaaaaatttggccaatttgaaaattctcacac 8059383  T
Q  538 gcaaataggtctcggaattttatttagcacac 569  Q
     ||||| |||||||||||||||||||||||||    
T  8059382 acaaatcggtctcggaattttatttagcacac 8059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 32127295 - 32127144
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  | ||| ||||| ||||||||||||||||||    |||||||||||| | |||||||||||    
T  32127295 ggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaa----aaagaaaaatttaggcaatctgaaaa 32127200  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||||||||||| ||| ||||||||||||||||||||| || ||| |||||    
T  32127199 ttgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 436 - 570
Target Start/End: Original strand, 18981636 - 18981766
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| || |||||||||| |||||||||  ||||| |||||| |||||| ||||||||||    |||||||||||||| |||| | |||||| | ||    
T  18981636 cgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaa----aaagaaaaatttgggcaatttaaaaattgtcac 18981731  T
Q  536 acgcaaataggtctcggaattttatttagcacact 570  Q
    |||||||||||||| ||||||||||||||||||||    
T  18981732 acgcaaataggtcttggaattttatttagcacact 18981766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 31581776 - 31581622
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| | ||||| | ||||| ||||| || ||||||  || || |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  31581776 ggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 31581681  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  31581680 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 17445193 - 17445057
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| || |||| ||||||||||||| |||  ||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  17445193 ggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 17445100  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  17445099 ttgtcacacgtaaataggtcttggaattttatttagcacacta 17445057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 587
Target Start/End: Complemental strand, 26162846 - 26162702
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    |||||||  |||||||||||||||||||| || ||||| ||||   |||||||||| ||||||    |||||||||||||| |||||| |||||||| |     
T  26162846 cgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaa----aaagaaaaatttgggcaatctaaaaattctcaa 26162751  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || |||||||||||||||   |||||||||||| || || ||| ||||||||    
T  26162750 acacaaataggtctcgga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 557
Target Start/End: Complemental strand, 2958247 - 2958131
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||  |||||||||  ||||| |||||  |||||||||||||||||    | ||||||||||||  |||||||||||| | ||    
T  2958247 cgggctcgatcgataattttg-cacattagactcaacccaaaagcccattaacacatttacaa----agagaaaaatttgggtaatctgaaaattgtcac 2958153  T
Q  536 acgcaaataggtctcggaattt 557  Q
    |||||||||||||| |||||||    
T  2958152 acgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 4555350 - 4555250
Alignment:
Q  444 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttacacgcaa 541  Q
    ||||||||||||| ||||| | | |||||| ||||| || |||||||| |||    ||||||||||| |||||  | |||||||||||||| ||||| ||    
T  4555350 atcgataatttttgcacatcaaacccaacccaaaagctcgttaacacactta----caaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  542 atagg 546  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 3828997 - 3829150
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    ||||||||||| || ||||||||||||| ||||||| | |||||| ||||||||||||||||| |||    ||||||||||||||||| |||||||||||    
T  3828997 ggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacactta----caaaaagaaaaatttgggcaatctgaaaa 3829092  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | | |||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  3829093 ttttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 429 - 586
Target Start/End: Original strand, 17445326 - 17445479
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||  ||| |||||||||  ||||||||||||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  17445326 ggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 17445421  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 586  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||    
T  17445422 ttctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 32982210 - 32982056
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||| | ||||||||||||| ||||||||| |||||| |||||  |||||||| ||||||||    ||||||||||||||||||||||||||    
T  32982210 ggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaa----aaagaaaaatttggacaatctgaaaa 32982115  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    || | |||| ||||||||||| ||||||||||||||||| ||| || | ||||||||||    
T  32982114 ttgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 436 - 587
Target Start/End: Complemental strand, 321524 - 321377
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| |||||||||||||   |||||||||||||| |||||| |||||||||| ||||||    |||||||||||||| ||||||||||||||| |     
T  321524 cgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaa----aaagaaaaatttgggcaatctgaaaattctcat 321429  T
Q  536 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    | |||||||||||||||||||||||||| |||| || || ||| ||||||||    
T  321428 atgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 26144268 - 26144406
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  26144268 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 26144363  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  26144364 ttgtcacacgtaaataggtcttggaattttatttggcacacta 26144406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 431 - 587
Target Start/End: Complemental strand, 42311093 - 42310941
Alignment:
Q  431 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 530  Q
    |||| ||||||| ||||||||||||| |||||||||  ||||| |||||  | |||||||||||||||    |||||||||||||| |||||||||||||    
T  42311093 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 42310998  T
Q  531 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
     | ||||||||||| |||| | |||||||||||| || ||| || ||| ||||||||    
T  42310997 gtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 568
Target Start/End: Original strand, 35907565 - 35907700
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||  ||||||||||||| ||||||||| |||||| |||||   ||||  ||| ||||||    |||||||| |||||  ||||||||||    
T  35907565 ggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaa----aaagaaaattttgggtaatctgaaaa 35907660  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcaca 568  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35907661 ttctcacacgcaaataggtctcggaattttatttagcaca 35907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 7433458 - 7433609
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| || |||| ||| ||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||| ||||| |||||| ||||    
T  7433458 ggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaattttgggcaatctaaaaa 7433553  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 584  Q
    || | |||| ||||||||||| | ||||||||||||||||||| || ||| |||||    
T  7433554 ttgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 41972420 - 41972314
Alignment:
Q  438 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttac 535  Q
    ||||| ||||||||||||| |||||||||||||||| |||||   ||||||||| |||    |||||||||||||||||  | |||||||||||||| ||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacactta----caaaaagaaaaatttggaaaaaatctgaaaattctcac 41972325  T
Q  536 acgcaaatagg 546  Q
    |||||||||||    
T  41972324 acgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 526
Target Start/End: Original strand, 23313281 - 23313345
Alignment:
Q  458 cacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaa 526  Q
    |||||||||  ||||  |||||||||||||||||||||    ||||||||||||||||| |||||||||    
T  23313281 cacattagactcaacataaaagttcattaacacattta----caaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 535 - 673
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  535 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 630  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  631 ttgtcacacgtaaataggtcttggaattttatttggcacacta 673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 5243 - 5397
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||| | |||||   ||||||||| ||||||    |||||||| ||||| |||||||||||    
T  5243 ggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaa----aaagaaaattttgggcaatctgaaaa 5338  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 587  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  5339 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 31493 - 31631
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||| |||| |||||| |||||  |||||||||| ||||||    ||||||||||||||||||||||||||    
T  31493 ggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaa----aaagaaaaatttggacaatctgaaaa 31588  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    |||| || ||||||||||||| | |||||||||| ||||||||    
T  31589 ttctcactcgcaaataggtctagtaattttattttgcacacta 31631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 571
Target Start/End: Complemental strand, 480611 - 480473
Alignment:
Q  429 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 528  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  480611 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 480516  T
Q  529 ttcttacacgcaaataggtctcggaattttatttagcacacta 571  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  480515 ttgtcacacgtaaataggtcttggaattttatttggcacacta 480473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 571
Target Start/End: Original strand, 17862 - 17993
Alignment:
Q  436 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 535  Q
    ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||    
T  17862 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcac 17957  T
Q  536 acgcaaataggtctcggaattttatttagcacacta 571  Q
    | | |||||||||| | |||||||||||||||||||    
T  17958 atgtaaataggtcttgaaattttatttagcacacta 17993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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