View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_11 (Length: 512)
Name: NF14258_low_11
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 13969101 - 13969591
Alignment:
| Q |
1 |
ttgttgtaacaggaagaagaacctaatgatcgaaagatcagcaagttatgcgagtatgcatcgaaaaatcctcttcgtgttactaaggtatgtaatgaat |
100 |
Q |
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| T |
13969101 |
ttgttgtaacaggaagaagaacctaatgatcgtaagatcagcaaattatgcgagtatgcatcgaaaaatcctcttcgtgttcctaaggtatgcaatgaat |
13969200 |
T |
|
| Q |
101 |
tgtattgattgtcatatgtaattggaattggaactattatttcttannnnnnnnatgagtaagacccaattcaatccctcataattttcttgcgcaacaa |
200 |
Q |
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| T |
13969201 |
tgtattgattgtcaaatggaattggaattggaactattatttcttatttttt--atgagtaagacccaattcaatccctcataattttcttgcgcagcaa |
13969298 |
T |
|
| Q |
201 |
ttcaatcttgacgnnnnnnnntaccgaaattactcaccaatatttacatacttaggacaaattagtccctctaatataatgatatagagactaatttgtc |
300 |
Q |
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| T |
13969299 |
ttcaatcttgacgaaaaaaa-tacccaaattactcacaaacattttcatacttaggacaaattagtccctctaatataatgatatagagactaatttgtt |
13969397 |
T |
|
| Q |
301 |
ctcacagggactaatttgagattaatttttgtcaggcactgaattgtgccattagaaaaatgtgaggaatcgagttgggttttcactccttgttgaatag |
400 |
Q |
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| T |
13969398 |
ctcacagggactaatttgagattaatttttgtcaggcactgaattgtgccattagaaaaatgtgaggaatcgagttgggttttcactccttgtcgaatag |
13969497 |
T |
|
| Q |
401 |
ccccgggggcaannnnnnnatatgactgatatttg-aaaatgactgtgttggccatggttgtttttacagataacaagctatcttgagcaaagat |
494 |
Q |
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| T |
13969498 |
acccgggggcaattttttt-tatgactgatatttgtaaaatgactgtgttggccatggttgtttttacagataacaagctatcttgagcaaagat |
13969591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 55165318 - 55165347
Alignment:
| Q |
161 |
aagacccaattcaatccctcataattttct |
190 |
Q |
| |
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|
| T |
55165318 |
aagacccaattcaatccctcataattttct |
55165347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 14690824 - 14690865
Alignment:
| Q |
255 |
ggacaaattagtccctctaatataatgatatagagactaatt |
296 |
Q |
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| T |
14690824 |
ggacaaattagtccctctaatataatgagttagggactaatt |
14690865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 35546423 - 35546378
Alignment:
| Q |
255 |
ggacaaattagtccctctaatataatgatatagagactaatttgtc |
300 |
Q |
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|||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
35546423 |
ggacaaattagtccctttaatacaatgagttagagactaatttgtc |
35546378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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