View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_12 (Length: 486)
Name: NF14258_low_12
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 89 - 476
Target Start/End: Complemental strand, 6356525 - 6356138
Alignment:
| Q |
89 |
ggagagattttgaaattaaaataagaaagaaatgaattttaagggtagagattttcccactttaaaaaatatgagaaaactcgagaaaaccaatgcatac |
188 |
Q |
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| T |
6356525 |
ggagagattttgaaattaaaataagaaagaaatgaattttaagggtagagattttcccactttaaaaaatatgagaaaactcgagaaaaccaatgcagac |
6356426 |
T |
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| Q |
189 |
acgtaagatagtagtaataattaacaatagagcaaacagagtcattattattgaacataatgccaaggctggcacatataacaactacccaaataatttt |
288 |
Q |
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| T |
6356425 |
acgtaagatagtagtaataattaacaatagagcaaacagagtcattattattgaacataatgccaaggctggcacatataacaactaccaaaataatttt |
6356326 |
T |
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| Q |
289 |
gcaatcggatatattattattttatataccacgagaaaatcactcataataaaaaattagcataagacgtgaccaattgcattccaccatgttgtaattg |
388 |
Q |
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| T |
6356325 |
gcaatcggatatattattattttatataccacgagataatcactcataataaaaaattagcataagacgtgaccaattgcattccaccatgttgtaaatg |
6356226 |
T |
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| Q |
389 |
agtagttgaataaaaatatcacctcatttgaactataacattgtgatcctaatctcatcaactactataaatactaaccacccctatg |
476 |
Q |
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| T |
6356225 |
agtagttgaataaaaatatcacctcatttgaactataacattgtgatcctaatctcatcaactactataaatactaaccacccctatg |
6356138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 6356615 - 6356563
Alignment:
| Q |
18 |
agcaagtgtatctcaagtccaatcctaatcttgatttgatagtaagagagaaa |
70 |
Q |
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| T |
6356615 |
agcaaatgtatctcaagtccaatcctaatcttgatttgatagtatgagagaaa |
6356563 |
T |
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