View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_17 (Length: 417)
Name: NF14258_low_17
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 115 - 417
Target Start/End: Complemental strand, 35878853 - 35878554
Alignment:
| Q |
115 |
aggacggaccatcaaacaagacactcttttttgtcattggccacctgcatgatttgattgacttcatagaaaaatgaatccttttattcagtcttcatca |
214 |
Q |
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| T |
35878853 |
aggacggaccatcaaacaagacactcttt---gtcattggccacctgcatgatttgactgacttcatagaaaaatgaatccttttattcagtcttcatca |
35878757 |
T |
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| Q |
215 |
caaactggttgctgcaacataaagtgtcatcaattatttcatcttacaaaacacacataaaacaaggtactcatgcacatgccccagtgtgacaaaagat |
314 |
Q |
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| T |
35878756 |
caaactggttgctgcaacataaagtgtcataaattatttcatcttacaaaacacacataaaacaaggtactcatgcacatgccccagtgtgacaaaaaag |
35878657 |
T |
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| Q |
315 |
aactaatacatgtgaatttaataaacgaatttataatattagcaatgataagttgataacaaaatgcacactatgttgcttaatctacacagttatctaa |
414 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35878656 |
aactaatacatgtgaatttaataaacaaacttataatattagcaatgataagttgataacaaaatgcacactatgttgcttaatctacacagttatctaa |
35878557 |
T |
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